Wall clock time and date at job start Tue Mar 31 2020 18:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35898 * 116.99651 * 2 1 4 4 C 1.38737 * 120.04888 * 179.97438 * 3 2 1 5 5 C 1.38146 * 119.93876 * 179.97438 * 4 3 2 6 6 C 1.38267 * 120.05992 * 0.02562 * 5 4 3 7 7 C 1.50691 * 119.94607 * 180.02562 * 6 5 4 8 8 H 1.09004 * 109.47605 * 19.99176 * 7 6 5 9 9 C 1.53009 * 109.47012 * 260.00058 * 7 6 5 10 10 C 1.50693 * 109.47013 * 174.40168 * 9 7 6 11 11 O 1.20830 * 120.00621 * 354.45655 * 10 9 7 12 12 O 1.34234 * 119.99687 * 174.45569 * 10 9 7 13 13 N 1.46494 * 109.47392 * 139.99792 * 7 6 5 14 14 C 1.34777 * 120.00333 * 278.70788 * 13 7 6 15 15 O 1.21288 * 119.99587 * 355.08984 * 14 13 7 16 16 C 1.50700 * 120.00438 * 175.09131 * 14 13 7 17 17 C 1.52995 * 109.47351 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.47378 * 180.02562 * 17 16 14 19 19 C 1.50700 * 109.47143 * 179.97438 * 18 17 16 20 20 H 1.07994 * 120.00133 * 0.02562 * 19 18 17 21 21 C 1.37874 * 119.99534 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00299 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99729 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46908 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46873 * 120.00374 * 23 21 19 26 26 H 1.48495 * 109.47326 * 240.00403 * 23 21 19 27 27 C 1.38266 * 120.11031 * 0.27114 * 6 5 4 28 28 C 1.38154 * 120.05269 * 359.45593 * 27 6 5 29 29 H 1.09000 * 109.47290 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46887 * 300.00152 * 1 2 3 31 31 H 1.08992 * 109.47172 * 59.99980 * 1 2 3 32 32 H 1.07997 * 120.03264 * 359.95687 * 4 3 2 33 33 H 1.08002 * 119.96979 * 180.02562 * 5 4 3 34 34 H 1.08991 * 109.46950 * 54.39804 * 9 7 6 35 35 H 1.09007 * 109.46599 * 294.40041 * 9 7 6 36 36 H 0.96702 * 116.99947 * 180.02562 * 12 10 9 37 37 H 0.97003 * 120.00229 * 98.71010 * 13 7 6 38 38 H 1.08993 * 109.46987 * 300.00159 * 16 14 13 39 39 H 1.09006 * 109.46666 * 59.99907 * 16 14 13 40 40 H 1.09007 * 109.47030 * 300.00013 * 17 16 14 41 41 H 1.08996 * 109.46959 * 59.99614 * 17 16 14 42 42 H 1.09000 * 109.46644 * 299.99864 * 18 17 16 43 43 H 1.08997 * 109.46718 * 59.99681 * 18 17 16 44 44 H 0.97004 * 119.99639 * 179.97438 * 22 21 19 45 45 H 1.07998 * 119.97534 * 179.70318 * 27 6 5 46 46 H 1.08001 * 120.02439 * 180.27174 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3019 3.6758 -0.0005 7 6 3.9861 5.0185 -0.0017 8 1 5.0114 4.9036 -0.3533 9 6 3.9949 5.5876 1.4186 10 6 4.7974 6.8628 1.4437 11 8 5.3925 7.2219 0.4553 12 8 4.8512 7.5999 2.5643 13 7 3.2648 5.9333 -0.8899 14 6 3.4776 5.8889 -2.2200 15 8 4.3299 5.1547 -2.6736 16 6 2.6568 6.7515 -3.1437 17 6 3.0961 6.5123 -4.5896 18 6 2.2631 7.3885 -5.5274 19 6 2.6963 7.1533 -6.9515 20 1 3.4864 6.4490 -7.1663 21 6 2.0833 7.8365 -7.9802 22 7 1.1208 8.6938 -7.7187 23 14 2.6207 7.5455 -9.7455 24 1 3.7140 6.5410 -9.7708 25 1 1.4690 7.0432 -10.5371 26 1 3.1058 8.8206 -10.3318 27 6 1.9211 3.6048 0.0051 28 6 1.2915 2.3751 0.0000 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 4.0209 0.3799 0.0017 33 1 5.1345 2.5750 0.0000 34 1 4.4434 4.8626 2.0977 35 1 2.9721 5.7956 1.7329 36 1 5.3784 8.4100 2.5320 37 1 2.6340 6.5711 -0.5207 38 1 1.6024 6.4969 -3.0371 39 1 2.8049 7.8008 -2.8882 40 1 4.1506 6.7672 -4.6959 41 1 2.9484 5.4631 -4.8453 42 1 1.2086 7.1339 -5.4212 43 1 2.4113 8.4376 -5.2714 44 1 0.6898 9.1747 -8.4425 45 1 1.3342 4.5114 0.0095 46 1 0.2129 2.3202 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599509456.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:38 Heat of formation + Delta-G solvation = -157.967791 kcal Electronic energy + Delta-G solvation = -28361.831864 eV Core-core repulsion = 24216.235381 eV Total energy + Delta-G solvation = -4145.596483 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.92121 -40.25474 -39.37606 -37.86377 -36.48411 -35.21315 -34.08542 -32.17112 -31.49518 -31.27602 -29.90951 -27.91617 -27.51622 -25.02686 -23.66357 -22.86552 -21.94236 -20.98982 -20.35783 -19.68830 -18.50707 -18.31854 -17.27383 -16.81465 -16.61088 -16.20545 -15.98944 -15.92952 -15.70383 -15.37531 -14.97121 -14.43929 -14.38510 -14.00708 -13.73705 -13.60400 -13.31167 -13.16933 -12.96527 -12.79231 -12.27908 -12.22697 -12.10700 -11.83503 -11.76195 -11.72655 -11.29372 -11.22348 -11.01351 -10.82970 -10.78117 -10.53931 -10.47835 -9.62226 -9.60150 -9.22664 -9.19884 -9.06424 -8.94571 -8.32276 -8.28517 -5.94140 -3.95021 1.13592 1.16772 1.92307 2.66994 3.01142 3.05251 3.23767 3.36301 3.43373 3.49796 3.55853 4.32718 4.52700 4.53728 4.56621 4.66310 4.71116 4.81833 4.86897 4.98043 5.12514 5.15635 5.16860 5.24089 5.29345 5.41667 5.42068 5.61240 5.78066 5.79835 5.83584 6.01400 6.13441 6.20840 6.28384 6.36910 6.52529 6.56442 6.80133 7.00300 7.14018 7.22882 7.59099 7.63950 7.76212 7.89106 8.07229 8.51570 8.56530 9.12411 9.68768 11.17456 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.008430 B = 0.002887 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3320.706508 B = 9697.681712 C =12227.578841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.128 3.872 4 C -0.151 4.151 5 C -0.060 4.060 6 C -0.133 4.133 7 C 0.203 3.797 8 H 0.105 0.895 9 C -0.117 4.117 10 C 0.471 3.529 11 O -0.495 6.495 12 O -0.521 6.521 13 N -0.732 5.732 14 C 0.521 3.479 15 O -0.529 6.529 16 C -0.137 4.137 17 C -0.094 4.094 18 C 0.020 3.980 19 C -0.515 4.515 20 H 0.056 0.944 21 C 0.055 3.945 22 N -0.898 5.898 23 Si 0.891 3.109 24 H -0.272 1.272 25 H -0.285 1.285 26 H -0.284 1.284 27 C -0.060 4.060 28 C -0.208 4.208 29 H 0.099 0.901 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.122 0.878 35 H 0.111 0.889 36 H 0.411 0.589 37 H 0.396 0.604 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.015 0.985 43 H 0.015 0.985 44 H 0.259 0.741 45 H 0.124 0.876 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.014 -10.975 27.532 29.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.083 3.917 4 C -0.170 4.170 5 C -0.079 4.079 6 C -0.135 4.135 7 C 0.097 3.903 8 H 0.123 0.877 9 C -0.155 4.155 10 C 0.312 3.688 11 O -0.381 6.381 12 O -0.334 6.334 13 N -0.385 5.385 14 C 0.309 3.691 15 O -0.404 6.404 16 C -0.177 4.177 17 C -0.132 4.132 18 C -0.017 4.017 19 C -0.554 4.554 20 H 0.075 0.925 21 C -0.146 4.146 22 N -0.538 5.538 23 Si 0.719 3.281 24 H -0.197 1.197 25 H -0.211 1.211 26 H -0.211 1.211 27 C -0.078 4.078 28 C -0.227 4.227 29 H 0.117 0.883 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.140 0.860 35 H 0.129 0.871 36 H 0.270 0.730 37 H 0.229 0.771 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.033 0.967 43 H 0.034 0.966 44 H 0.068 0.932 45 H 0.142 0.858 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.536 -11.854 26.815 29.323 hybrid contribution -0.131 0.948 -0.824 1.263 sum 0.404 -10.906 25.991 28.189 Atomic orbital electron populations 1.23065 0.78307 1.03947 1.01495 1.86065 1.21475 1.27033 1.88663 1.19071 0.92414 0.84146 0.96075 1.20393 0.91355 0.98605 1.06621 1.20815 0.99967 0.90785 0.96321 1.19964 0.93870 0.94628 1.05024 1.19394 0.97907 0.85807 0.87172 0.87689 1.21697 1.01881 0.92742 0.99205 1.23376 0.79614 0.85575 0.80235 1.90845 1.42134 1.70202 1.34873 1.84513 1.69630 1.39193 1.40047 1.46067 1.46171 1.39217 1.07057 1.21141 0.83370 0.82721 0.81879 1.90670 1.33203 1.40556 1.75938 1.21829 0.99604 0.99377 0.96929 1.21430 1.00603 1.01065 0.90111 1.19133 0.94761 0.94477 0.93293 1.21323 1.18962 1.23406 0.91678 0.92525 1.25021 0.95120 0.95266 0.99160 1.69977 1.24803 1.27072 1.31980 0.86545 0.78563 0.78023 0.84967 1.19663 1.21073 1.21057 1.20715 0.93799 0.97052 0.96267 1.21209 1.00061 0.92282 1.09103 0.88264 0.92668 0.92424 0.85109 0.85123 0.85971 0.87057 0.72957 0.77065 0.89534 0.89523 0.92696 0.92773 0.96681 0.96643 0.93182 0.85803 0.85417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.31 10.50 -19.42 -0.20 -3.51 16 3 C 0.13 1.40 6.69 -39.22 -0.26 1.13 16 4 C -0.15 -1.61 9.99 -39.43 -0.39 -2.00 16 5 C -0.06 -0.63 9.66 -39.60 -0.38 -1.01 16 6 C -0.13 -1.39 4.86 -104.61 -0.51 -1.90 16 7 C 0.20 2.10 1.72 -69.09 -0.12 1.98 16 8 H 0.11 1.37 7.20 -51.93 -0.37 1.00 16 9 C -0.12 -0.78 5.31 -27.88 -0.15 -0.93 16 10 C 0.47 4.12 8.15 36.00 0.29 4.41 16 11 O -0.49 -6.53 16.22 -18.75 -0.30 -6.83 16 12 O -0.52 -3.32 13.42 -39.27 -0.53 -3.84 16 13 N -0.73 -8.66 3.68 -54.93 -0.20 -8.86 16 14 C 0.52 8.70 7.73 -10.99 -0.08 8.62 16 15 O -0.53 -11.00 15.68 5.55 0.09 -10.91 16 16 C -0.14 -2.38 5.70 -27.89 -0.16 -2.54 16 17 C -0.09 -2.12 4.44 -26.73 -0.12 -2.24 16 18 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 19 C -0.52 -15.27 9.11 -34.44 -0.31 -15.58 16 20 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 21 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 22 N -0.90 -27.52 13.29 55.43 0.74 -26.78 16 23 Si 0.89 22.42 29.54 -169.99 -5.02 17.40 16 24 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 27 C -0.06 -0.59 9.32 -39.60 -0.37 -0.96 16 28 C -0.21 -2.06 9.04 -39.43 -0.36 -2.42 16 29 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 31 H 0.06 0.37 7.66 -51.93 -0.40 -0.02 16 32 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 33 H 0.13 1.16 8.03 -52.49 -0.42 0.74 16 34 H 0.12 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.11 0.51 8.14 -51.92 -0.42 0.08 16 36 H 0.41 1.23 9.10 45.56 0.41 1.65 16 37 H 0.40 3.54 8.57 -40.82 -0.35 3.19 16 38 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.05 1.30 8.10 -51.93 -0.42 0.88 16 41 H 0.05 1.27 8.10 -51.93 -0.42 0.85 16 42 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 45 H 0.12 1.01 7.72 -52.49 -0.41 0.60 16 46 H 0.13 1.01 6.30 -52.49 -0.33 0.68 16 LS Contribution 395.16 15.07 5.96 5.96 Total: -1.00 -38.93 395.16 -7.67 -46.61 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -6.03 Total: 1.12 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -2.17 Total: -10.34 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.53 Total: -35.65 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.95 Total: -25.09 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -38.93 -7.67 -46.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599509456.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.363 kcal (2) G-P(sol) polarization free energy of solvation -38.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds