Wall clock time and date at job start Tue Mar 31 2020 18:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35898 * 116.99651 * 2 1 4 4 C 1.38737 * 120.04888 * 179.97438 * 3 2 1 5 5 C 1.38146 * 119.93876 * 179.97438 * 4 3 2 6 6 C 1.38267 * 120.05992 * 0.02562 * 5 4 3 7 7 C 1.50691 * 119.94607 * 180.02562 * 6 5 4 8 8 H 1.09004 * 109.47605 * 19.99176 * 7 6 5 9 9 C 1.53009 * 109.47012 * 260.00058 * 7 6 5 10 10 C 1.50693 * 109.47013 * 174.40168 * 9 7 6 11 11 O 1.20830 * 120.00621 * 354.45655 * 10 9 7 12 12 O 1.34234 * 119.99687 * 174.45569 * 10 9 7 13 13 N 1.46494 * 109.47392 * 139.99792 * 7 6 5 14 14 C 1.34777 * 120.00333 * 278.70788 * 13 7 6 15 15 O 1.21288 * 119.99587 * 355.08984 * 14 13 7 16 16 C 1.50700 * 120.00438 * 175.09131 * 14 13 7 17 17 C 1.52995 * 109.47351 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.47378 * 180.02562 * 17 16 14 19 19 C 1.50700 * 109.47143 * 179.97438 * 18 17 16 20 20 H 1.07994 * 120.00133 * 0.02562 * 19 18 17 21 21 C 1.37874 * 119.99534 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00299 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99729 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46908 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46873 * 120.00374 * 23 21 19 26 26 H 1.48495 * 109.47326 * 240.00403 * 23 21 19 27 27 C 1.38266 * 120.11031 * 0.27114 * 6 5 4 28 28 C 1.38154 * 120.05269 * 359.45593 * 27 6 5 29 29 H 1.09000 * 109.47290 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46887 * 300.00152 * 1 2 3 31 31 H 1.08992 * 109.47172 * 59.99980 * 1 2 3 32 32 H 1.07997 * 120.03264 * 359.95687 * 4 3 2 33 33 H 1.08002 * 119.96979 * 180.02562 * 5 4 3 34 34 H 1.08991 * 109.46950 * 54.39804 * 9 7 6 35 35 H 1.09007 * 109.46599 * 294.40041 * 9 7 6 36 36 H 0.96702 * 116.99947 * 180.02562 * 12 10 9 37 37 H 0.97003 * 120.00229 * 98.71010 * 13 7 6 38 38 H 1.08993 * 109.46987 * 300.00159 * 16 14 13 39 39 H 1.09006 * 109.46666 * 59.99907 * 16 14 13 40 40 H 1.09007 * 109.47030 * 300.00013 * 17 16 14 41 41 H 1.08996 * 109.46959 * 59.99614 * 17 16 14 42 42 H 1.09000 * 109.46644 * 299.99864 * 18 17 16 43 43 H 1.08997 * 109.46718 * 59.99681 * 18 17 16 44 44 H 0.97004 * 119.99639 * 179.97438 * 22 21 19 45 45 H 1.07998 * 119.97534 * 179.70318 * 27 6 5 46 46 H 1.08001 * 120.02439 * 180.27174 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3019 3.6758 -0.0005 7 6 3.9861 5.0185 -0.0017 8 1 5.0114 4.9036 -0.3533 9 6 3.9949 5.5876 1.4186 10 6 4.7974 6.8628 1.4437 11 8 5.3925 7.2219 0.4553 12 8 4.8512 7.5999 2.5643 13 7 3.2648 5.9333 -0.8899 14 6 3.4776 5.8889 -2.2200 15 8 4.3299 5.1547 -2.6736 16 6 2.6568 6.7515 -3.1437 17 6 3.0961 6.5123 -4.5896 18 6 2.2631 7.3885 -5.5274 19 6 2.6963 7.1533 -6.9515 20 1 3.4864 6.4490 -7.1663 21 6 2.0833 7.8365 -7.9802 22 7 1.1208 8.6938 -7.7187 23 14 2.6207 7.5455 -9.7455 24 1 3.7140 6.5410 -9.7708 25 1 1.4690 7.0432 -10.5371 26 1 3.1058 8.8206 -10.3318 27 6 1.9211 3.6048 0.0051 28 6 1.2915 2.3751 0.0000 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 4.0209 0.3799 0.0017 33 1 5.1345 2.5750 0.0000 34 1 4.4434 4.8626 2.0977 35 1 2.9721 5.7956 1.7329 36 1 5.3784 8.4100 2.5320 37 1 2.6340 6.5711 -0.5207 38 1 1.6024 6.4969 -3.0371 39 1 2.8049 7.8008 -2.8882 40 1 4.1506 6.7672 -4.6959 41 1 2.9484 5.4631 -4.8453 42 1 1.2086 7.1339 -5.4212 43 1 2.4113 8.4376 -5.2714 44 1 0.6898 9.1747 -8.4425 45 1 1.3342 4.5114 0.0095 46 1 0.2129 2.3202 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599509456.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:37 Heat of formation + Delta-G solvation = -185.086405 kcal Electronic energy + Delta-G solvation = -28363.007815 eV Core-core repulsion = 24216.235381 eV Total energy + Delta-G solvation = -4146.772434 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.73241 -40.96233 -40.48572 -38.72880 -37.15536 -36.30339 -35.93303 -34.05314 -32.65391 -32.03113 -30.59137 -29.65492 -28.19457 -26.27752 -25.18133 -23.68559 -22.66342 -22.41284 -21.34965 -21.19660 -19.20188 -18.98988 -18.63959 -18.00445 -17.72763 -17.38889 -16.87094 -16.66733 -16.61408 -16.51125 -16.46503 -15.91890 -15.33542 -15.01586 -14.66026 -14.63564 -14.42854 -14.25316 -14.04595 -13.83135 -13.65471 -13.38192 -13.14624 -12.88064 -12.79822 -12.66542 -12.54256 -12.51580 -12.46361 -12.37962 -11.92419 -11.71820 -11.57908 -11.56479 -11.46362 -11.25374 -10.73292 -10.55283 -10.16597 -9.94446 -9.09311 -8.21018 -6.30808 0.36247 0.40538 1.26582 1.38406 1.38657 1.52825 1.73649 2.11807 2.19968 2.38495 2.41520 2.78415 3.11726 3.62887 3.80185 3.84462 3.94737 3.97356 4.15374 4.22657 4.27251 4.30808 4.39800 4.42907 4.47265 4.55379 4.63609 4.68868 4.74551 4.78123 4.86792 4.97334 5.08576 5.10783 5.18470 5.25764 5.38224 5.41442 5.53794 5.68076 5.68988 5.74992 5.79734 5.86261 6.27317 6.44258 6.57482 6.84355 7.03617 7.34377 7.37969 8.90721 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.008430 B = 0.002887 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3320.706508 B = 9697.681712 C =12227.578841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.337 6.337 3 C 0.115 3.885 4 C -0.166 4.166 5 C -0.071 4.071 6 C -0.140 4.140 7 C 0.205 3.795 8 H 0.075 0.925 9 C -0.109 4.109 10 C 0.478 3.522 11 O -0.547 6.547 12 O -0.512 6.512 13 N -0.710 5.710 14 C 0.522 3.478 15 O -0.578 6.578 16 C -0.130 4.130 17 C -0.081 4.081 18 C 0.027 3.973 19 C -0.547 4.547 20 H 0.049 0.951 21 C 0.004 3.996 22 N -0.928 5.928 23 Si 0.962 3.038 24 H -0.269 1.269 25 H -0.273 1.273 26 H -0.275 1.275 27 C -0.064 4.064 28 C -0.212 4.212 29 H 0.117 0.883 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.148 0.852 35 H 0.144 0.856 36 H 0.426 0.574 37 H 0.413 0.587 38 H 0.111 0.889 39 H 0.102 0.898 40 H 0.035 0.965 41 H 0.039 0.961 42 H 0.003 0.997 43 H 0.000 1.000 44 H 0.265 0.735 45 H 0.144 0.856 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.154 -10.987 28.937 30.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.251 6.251 3 C 0.070 3.930 4 C -0.185 4.185 5 C -0.089 4.089 6 C -0.142 4.142 7 C 0.100 3.900 8 H 0.093 0.907 9 C -0.146 4.146 10 C 0.322 3.678 11 O -0.437 6.437 12 O -0.326 6.326 13 N -0.363 5.363 14 C 0.310 3.690 15 O -0.457 6.457 16 C -0.170 4.170 17 C -0.119 4.119 18 C -0.010 4.010 19 C -0.585 4.585 20 H 0.067 0.933 21 C -0.194 4.194 22 N -0.569 5.569 23 Si 0.786 3.214 24 H -0.194 1.194 25 H -0.199 1.199 26 H -0.200 1.200 27 C -0.082 4.082 28 C -0.231 4.231 29 H 0.136 0.864 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.154 0.846 33 H 0.155 0.845 34 H 0.166 0.834 35 H 0.162 0.838 36 H 0.288 0.712 37 H 0.250 0.750 38 H 0.129 0.871 39 H 0.120 0.880 40 H 0.054 0.946 41 H 0.058 0.942 42 H 0.021 0.979 43 H 0.018 0.982 44 H 0.074 0.926 45 H 0.162 0.838 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.665 -11.842 28.303 30.688 hybrid contribution 0.199 0.954 -1.178 1.529 sum -0.466 -10.888 27.125 29.233 Atomic orbital electron populations 1.23327 0.76526 1.05504 1.02212 1.86041 1.23418 1.27017 1.88637 1.19288 0.92705 0.84801 0.96253 1.20580 0.91837 0.98983 1.07052 1.20984 1.00532 0.90967 0.96447 1.19975 0.94323 0.94316 1.05563 1.19388 0.96016 0.85905 0.88719 0.90714 1.21723 1.03682 0.92228 0.96955 1.23691 0.78559 0.85797 0.79753 1.90846 1.44504 1.71593 1.36800 1.84480 1.69564 1.39827 1.38695 1.45813 1.45716 1.39153 1.05599 1.20922 0.82652 0.82008 0.83384 1.90658 1.35261 1.42658 1.77102 1.21669 1.00954 1.00616 0.93765 1.21135 0.98732 0.99056 0.92973 1.19008 0.94526 0.94183 0.93244 1.21711 1.19333 1.23861 0.93629 0.93280 1.25899 0.94985 0.94753 1.03799 1.70072 1.25531 1.27588 1.33677 0.85452 0.78430 0.78254 0.79249 1.19375 1.19873 1.20004 1.20963 0.93597 0.97897 0.95722 1.21466 1.01109 0.91949 1.08552 0.86445 0.91154 0.92403 0.84575 0.84516 0.83418 0.83824 0.71204 0.74978 0.87133 0.87970 0.94597 0.94231 0.97888 0.98207 0.92632 0.83789 0.83509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.34 -6.72 10.50 -92.40 -0.97 -7.69 16 3 C 0.11 2.42 6.69 22.51 0.15 2.57 16 4 C -0.17 -3.51 9.99 22.37 0.22 -3.29 16 5 C -0.07 -1.46 9.66 22.25 0.22 -1.25 16 6 C -0.14 -2.76 4.86 -19.85 -0.10 -2.86 16 7 C 0.20 4.01 1.72 44.25 0.08 4.09 16 8 H 0.07 1.99 7.20 -2.38 -0.02 1.97 16 9 C -0.11 -1.15 5.31 29.85 0.16 -1.00 16 10 C 0.48 7.46 8.15 71.23 0.58 8.04 16 11 O -0.55 -14.21 16.22 21.95 0.36 -13.86 16 12 O -0.51 -5.19 13.42 -51.46 -0.69 -5.88 16 13 N -0.71 -15.78 3.68 -446.10 -1.64 -17.42 16 14 C 0.52 17.32 7.73 87.66 0.68 18.00 16 15 O -0.58 -24.68 15.68 -3.06 -0.05 -24.72 16 16 C -0.13 -4.44 5.70 29.85 0.17 -4.27 16 17 C -0.08 -3.73 4.44 30.59 0.14 -3.60 16 18 C 0.03 1.50 4.97 29.85 0.15 1.65 16 19 C -0.55 -33.08 9.11 25.60 0.23 -32.84 16 20 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 21 C 0.00 0.21 5.46 84.65 0.46 0.67 16 22 N -0.93 -57.04 13.29 21.45 0.28 -56.76 16 23 Si 0.96 46.08 29.54 68.60 2.03 48.11 16 24 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 25 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 26 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 27 C -0.06 -1.12 9.32 22.26 0.21 -0.91 16 28 C -0.21 -3.84 9.04 22.37 0.20 -3.64 16 29 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 0.60 7.66 -2.39 -0.02 0.58 16 31 H 0.06 0.67 7.66 -2.39 -0.02 0.65 16 32 H 0.14 2.57 8.06 -2.91 -0.02 2.54 16 33 H 0.14 2.50 8.03 -2.91 -0.02 2.48 16 34 H 0.15 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.14 0.67 8.14 -2.38 -0.02 0.65 16 36 H 0.43 1.66 9.10 -74.06 -0.67 0.99 16 37 H 0.41 6.26 8.57 -92.71 -0.79 5.46 16 38 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 39 H 0.10 3.17 8.14 -2.38 -0.02 3.15 16 40 H 0.04 1.76 8.10 -2.38 -0.02 1.74 16 41 H 0.04 1.91 8.10 -2.39 -0.02 1.89 16 42 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 43 H 0.00 -0.03 8.14 -2.39 -0.02 -0.04 16 44 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 45 H 0.14 1.85 7.72 -2.91 -0.02 1.83 16 46 H 0.15 1.98 6.30 -2.91 -0.02 1.96 16 Total: -1.00 -86.56 395.16 3.52 -83.05 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -0.46 Total: 12.49 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: 4.66 Total: -17.31 kcal Atomic # 7 Polarization: -72.82 SS G_CDS: -1.36 Total: -74.18 kcal Atomic # 8 Polarization: -50.80 SS G_CDS: -1.35 Total: -52.16 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -86.56 3.52 -83.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599509456.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.041 kcal (2) G-P(sol) polarization free energy of solvation -86.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds