Wall clock time and date at job start Tue Mar 31 2020 18:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35902 * 117.00623 * 2 1 4 4 C 1.38727 * 120.05717 * 179.97438 * 3 2 1 5 5 C 1.38146 * 119.94055 * 179.97438 * 4 3 2 6 6 C 1.38267 * 120.05729 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.94373 * 180.02562 * 6 5 4 8 8 H 1.09005 * 109.47128 * 340.00385 * 7 6 5 9 9 C 1.52998 * 109.47140 * 100.00595 * 7 6 5 10 10 C 1.50706 * 109.47086 * 293.40912 * 9 7 6 11 11 O 1.20830 * 119.99668 * 353.26557 * 10 9 7 12 12 O 1.34226 * 120.00108 * 173.27379 * 10 9 7 13 13 N 1.46502 * 109.47131 * 220.00549 * 7 6 5 14 14 C 1.34780 * 119.99600 * 154.10426 * 13 7 6 15 15 O 1.21277 * 120.00290 * 355.00032 * 14 13 7 16 16 C 1.50703 * 119.99745 * 175.00427 * 14 13 7 17 17 C 1.52989 * 109.47313 * 179.97438 * 16 14 13 18 18 C 1.53004 * 109.47524 * 179.97438 * 17 16 14 19 19 C 1.50698 * 109.47553 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99620 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00165 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99842 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00151 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46720 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47135 * 120.00060 * 23 21 19 26 26 H 1.48501 * 109.47173 * 240.00222 * 23 21 19 27 27 C 1.38266 * 120.11336 * 0.02562 * 6 5 4 28 28 C 1.38142 * 120.05407 * 359.97438 * 27 6 5 29 29 H 1.08993 * 109.47772 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47569 * 300.01198 * 1 2 3 31 31 H 1.09003 * 109.46511 * 60.00439 * 1 2 3 32 32 H 1.07997 * 120.03472 * 359.95036 * 4 3 2 33 33 H 1.08002 * 119.96923 * 179.72591 * 5 4 3 34 34 H 1.08997 * 109.47130 * 53.40585 * 9 7 6 35 35 H 1.08998 * 109.47632 * 173.40781 * 9 7 6 36 36 H 0.96704 * 117.00008 * 179.97438 * 12 10 9 37 37 H 0.96996 * 120.00155 * 334.09621 * 13 7 6 38 38 H 1.09003 * 109.46969 * 299.99891 * 16 14 13 39 39 H 1.09004 * 109.46959 * 59.99405 * 16 14 13 40 40 H 1.09003 * 109.47253 * 300.00010 * 17 16 14 41 41 H 1.09004 * 109.47355 * 59.99940 * 17 16 14 42 42 H 1.09003 * 109.46922 * 300.00284 * 18 17 16 43 43 H 1.09004 * 109.46795 * 59.99669 * 18 17 16 44 44 H 0.97000 * 120.00261 * 179.97438 * 22 21 19 45 45 H 1.07997 * 119.97141 * 180.02562 * 27 6 5 46 46 H 1.07999 * 120.03193 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 3.4314 1.2847 0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6757 -0.0016 7 6 3.9863 5.0184 -0.0028 8 1 5.0115 4.9040 0.3492 9 6 3.9951 5.5850 -1.4239 10 6 4.8716 4.7282 -2.3009 11 8 5.5269 3.8375 -1.8139 12 8 4.9243 4.9546 -3.6228 13 7 3.2649 5.9348 0.8838 14 6 3.9135 6.9680 1.4569 15 8 5.1116 7.0873 1.3121 16 6 3.1497 7.9751 2.2776 17 6 4.1147 9.0359 2.8105 18 6 3.3393 10.0587 3.6433 19 6 4.2899 11.1033 4.1687 20 1 5.3420 11.0438 3.9320 21 6 3.8165 12.1354 4.9508 22 7 2.5353 12.2080 5.2386 23 14 4.9948 13.4306 5.6015 24 1 6.3720 13.1244 5.1380 25 1 4.5889 14.7671 5.0972 26 1 4.9601 13.4302 7.0861 27 6 1.9212 3.6048 -0.0021 28 6 1.2916 2.3752 -0.0016 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8898 31 1 -0.3632 0.5138 -0.8901 32 1 4.0209 0.3798 0.0018 33 1 5.1346 2.5748 0.0049 34 1 2.9795 5.5899 -1.8195 35 1 4.3832 6.6034 -1.4067 36 1 5.5009 4.3794 -4.1442 37 1 2.3206 5.7981 1.0584 38 1 2.3926 8.4520 1.6551 39 1 2.6667 7.4705 3.1145 40 1 4.8715 8.5587 3.4332 41 1 4.5980 9.5406 1.9739 42 1 2.5827 10.5359 3.0203 43 1 2.8556 9.5543 4.4799 44 1 2.2022 12.9339 5.7891 45 1 1.3344 4.5114 -0.0038 46 1 0.2130 2.3202 -0.0025 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599509457.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:42 Heat of formation + Delta-G solvation = -157.167893 kcal Electronic energy + Delta-G solvation = -28104.564958 eV Core-core repulsion = 23959.003161 eV Total energy + Delta-G solvation = -4145.561796 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.03196 -40.21941 -39.56096 -38.03643 -36.38376 -35.30338 -34.16564 -32.24907 -31.54232 -31.37304 -29.89135 -28.01344 -27.59925 -25.08463 -23.69473 -22.93341 -22.17506 -20.95388 -20.26910 -19.81170 -18.56044 -18.40525 -17.31642 -17.13596 -16.32638 -16.27037 -16.09449 -15.98591 -15.64484 -15.34352 -15.10663 -14.49419 -14.36410 -14.13932 -13.93199 -13.58495 -13.38625 -13.27017 -13.12683 -12.88570 -12.36616 -12.30269 -12.27363 -11.82811 -11.76183 -11.38618 -11.38316 -11.31832 -11.09085 -10.82364 -10.77848 -10.60626 -10.51447 -9.75850 -9.68584 -9.31587 -9.27413 -9.19423 -9.00968 -8.44594 -8.32195 -5.97704 -3.98876 1.03778 1.07256 1.98510 2.57980 2.87581 2.91250 3.30475 3.33907 3.41283 3.47006 3.51552 4.28250 4.40950 4.49617 4.53566 4.58303 4.69907 4.74656 4.91262 5.04814 5.06153 5.06754 5.15331 5.16974 5.36338 5.38580 5.40663 5.57735 5.69308 5.70093 5.78969 5.92258 6.00250 6.19077 6.23922 6.28140 6.45164 6.48822 6.72166 6.92518 7.03580 7.16032 7.50208 7.64155 7.71312 7.83607 8.03140 8.36854 8.47228 9.08530 9.65183 11.13819 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014442 B = 0.002170 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.339234 B =12897.334625 C =14258.545024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.129 3.871 4 C -0.155 4.155 5 C -0.040 4.040 6 C -0.137 4.137 7 C 0.202 3.798 8 H 0.109 0.891 9 C -0.125 4.125 10 C 0.486 3.514 11 O -0.509 6.509 12 O -0.518 6.518 13 N -0.734 5.734 14 C 0.514 3.486 15 O -0.532 6.532 16 C -0.138 4.138 17 C -0.095 4.095 18 C 0.020 3.980 19 C -0.517 4.517 20 H 0.057 0.943 21 C 0.055 3.945 22 N -0.898 5.898 23 Si 0.891 3.109 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.284 1.284 27 C -0.073 4.073 28 C -0.210 4.210 29 H 0.099 0.901 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.131 0.869 33 H 0.141 0.859 34 H 0.107 0.893 35 H 0.117 0.883 36 H 0.410 0.590 37 H 0.401 0.599 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.259 0.741 45 H 0.126 0.874 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.705 -24.392 -16.981 30.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.084 3.916 4 C -0.174 4.174 5 C -0.059 4.059 6 C -0.138 4.138 7 C 0.096 3.904 8 H 0.127 0.873 9 C -0.164 4.164 10 C 0.328 3.672 11 O -0.396 6.396 12 O -0.330 6.330 13 N -0.388 5.388 14 C 0.303 3.697 15 O -0.407 6.407 16 C -0.178 4.178 17 C -0.134 4.134 18 C -0.017 4.017 19 C -0.555 4.555 20 H 0.075 0.925 21 C -0.146 4.146 22 N -0.537 5.537 23 Si 0.719 3.281 24 H -0.197 1.197 25 H -0.211 1.211 26 H -0.211 1.211 27 C -0.091 4.091 28 C -0.229 4.229 29 H 0.118 0.882 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.149 0.851 33 H 0.159 0.841 34 H 0.125 0.875 35 H 0.135 0.865 36 H 0.268 0.732 37 H 0.236 0.764 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.069 0.931 45 H 0.143 0.857 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.947 -24.349 -16.613 29.889 hybrid contribution 0.055 0.429 0.060 0.436 sum -4.892 -23.921 -16.553 29.498 Atomic orbital electron populations 1.23064 0.78313 1.03981 1.01462 1.86074 1.21464 1.27058 1.88632 1.19109 0.92421 0.84138 0.95928 1.20469 0.91260 0.98793 1.06829 1.21022 1.00761 0.90258 0.93836 1.19740 0.93517 0.94525 1.05973 1.19340 0.98289 0.85199 0.87538 0.87272 1.21815 1.00542 1.00430 0.93573 1.23205 0.80410 0.82561 0.81021 1.90693 1.42452 1.31749 1.74750 1.84536 1.66153 1.61218 1.21105 1.46254 1.13847 1.29523 1.49183 1.21370 0.88319 0.81245 0.78783 1.90695 1.14952 1.74549 1.60495 1.21866 1.00308 0.96320 0.99338 1.21454 0.97043 0.95041 0.99815 1.19138 0.95363 0.92809 0.94408 1.21310 0.94623 1.08882 1.30672 0.92515 1.25024 0.95102 0.98061 0.96397 1.69969 1.12853 1.32464 1.38463 0.86541 0.81404 0.81523 0.78597 1.19679 1.21063 1.21050 1.20724 0.93729 0.97223 0.97422 1.21155 1.00024 0.92149 1.09576 0.88241 0.92493 0.92627 0.85125 0.84090 0.87518 0.86529 0.73158 0.76370 0.89166 0.89265 0.92640 0.92663 0.96602 0.96604 0.93138 0.85655 0.85322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.92 10.50 -19.43 -0.20 -3.13 16 3 C 0.13 1.26 6.69 -39.22 -0.26 0.99 16 4 C -0.15 -1.57 9.99 -39.43 -0.39 -1.96 16 5 C -0.04 -0.43 8.14 -39.60 -0.32 -0.75 16 6 C -0.14 -1.35 4.51 -104.60 -0.47 -1.82 16 7 C 0.20 2.17 2.01 -69.08 -0.14 2.03 16 8 H 0.11 1.47 7.00 -51.93 -0.36 1.10 16 9 C -0.12 -1.17 5.56 -27.88 -0.15 -1.32 16 10 C 0.49 4.82 8.01 36.01 0.29 5.10 16 11 O -0.51 -6.07 13.62 -18.75 -0.26 -6.32 16 12 O -0.52 -4.01 13.42 -39.25 -0.53 -4.54 16 13 N -0.73 -7.95 5.02 -54.93 -0.28 -8.23 16 14 C 0.51 7.70 7.80 -10.98 -0.09 7.61 16 15 O -0.53 -10.07 15.60 5.56 0.09 -9.99 16 16 C -0.14 -2.16 5.70 -27.89 -0.16 -2.32 16 17 C -0.10 -2.01 4.44 -26.73 -0.12 -2.13 16 18 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 19 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 20 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 21 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 22 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 23 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 24 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 27 C -0.07 -0.60 9.04 -39.61 -0.36 -0.96 16 28 C -0.21 -1.76 9.04 -39.43 -0.36 -2.11 16 29 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 31 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 32 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 33 H 0.14 1.55 6.87 -52.49 -0.36 1.19 16 34 H 0.11 0.77 8.12 -51.93 -0.42 0.35 16 35 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.41 1.49 9.10 45.56 0.41 1.90 16 37 H 0.40 3.26 6.87 -40.82 -0.28 2.98 16 38 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.05 1.23 8.10 -51.93 -0.42 0.80 16 41 H 0.05 1.20 8.10 -51.93 -0.42 0.78 16 42 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.13 0.76 6.90 -52.49 -0.36 0.39 16 46 H 0.13 0.79 6.30 -52.49 -0.33 0.46 16 LS Contribution 388.23 15.07 5.85 5.85 Total: -1.00 -36.19 388.23 -7.54 -43.73 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -5.84 Total: 1.71 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: -2.09 Total: -9.81 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.46 Total: -34.45 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.90 Total: -23.98 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.19 -7.54 -43.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599509457.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.438 kcal (2) G-P(sol) polarization free energy of solvation -36.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds