Wall clock time and date at job start Tue Mar 31 2020 18:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35902 * 117.00623 * 2 1 4 4 C 1.38727 * 120.05717 * 179.97438 * 3 2 1 5 5 C 1.38146 * 119.94055 * 179.97438 * 4 3 2 6 6 C 1.38267 * 120.05729 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.94373 * 180.02562 * 6 5 4 8 8 H 1.09005 * 109.47128 * 340.00385 * 7 6 5 9 9 C 1.52998 * 109.47140 * 100.00595 * 7 6 5 10 10 C 1.50706 * 109.47086 * 293.40912 * 9 7 6 11 11 O 1.20830 * 119.99668 * 353.26557 * 10 9 7 12 12 O 1.34226 * 120.00108 * 173.27379 * 10 9 7 13 13 N 1.46502 * 109.47131 * 220.00549 * 7 6 5 14 14 C 1.34780 * 119.99600 * 154.10426 * 13 7 6 15 15 O 1.21277 * 120.00290 * 355.00032 * 14 13 7 16 16 C 1.50703 * 119.99745 * 175.00427 * 14 13 7 17 17 C 1.52989 * 109.47313 * 179.97438 * 16 14 13 18 18 C 1.53004 * 109.47524 * 179.97438 * 17 16 14 19 19 C 1.50698 * 109.47553 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99620 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00165 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99842 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00151 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46720 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47135 * 120.00060 * 23 21 19 26 26 H 1.48501 * 109.47173 * 240.00222 * 23 21 19 27 27 C 1.38266 * 120.11336 * 0.02562 * 6 5 4 28 28 C 1.38142 * 120.05407 * 359.97438 * 27 6 5 29 29 H 1.08993 * 109.47772 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47569 * 300.01198 * 1 2 3 31 31 H 1.09003 * 109.46511 * 60.00439 * 1 2 3 32 32 H 1.07997 * 120.03472 * 359.95036 * 4 3 2 33 33 H 1.08002 * 119.96923 * 179.72591 * 5 4 3 34 34 H 1.08997 * 109.47130 * 53.40585 * 9 7 6 35 35 H 1.08998 * 109.47632 * 173.40781 * 9 7 6 36 36 H 0.96704 * 117.00008 * 179.97438 * 12 10 9 37 37 H 0.96996 * 120.00155 * 334.09621 * 13 7 6 38 38 H 1.09003 * 109.46969 * 299.99891 * 16 14 13 39 39 H 1.09004 * 109.46959 * 59.99405 * 16 14 13 40 40 H 1.09003 * 109.47253 * 300.00010 * 17 16 14 41 41 H 1.09004 * 109.47355 * 59.99940 * 17 16 14 42 42 H 1.09003 * 109.46922 * 300.00284 * 18 17 16 43 43 H 1.09004 * 109.46795 * 59.99669 * 18 17 16 44 44 H 0.97000 * 120.00261 * 179.97438 * 22 21 19 45 45 H 1.07997 * 119.97141 * 180.02562 * 27 6 5 46 46 H 1.07999 * 120.03193 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 3.4314 1.2847 0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6757 -0.0016 7 6 3.9863 5.0184 -0.0028 8 1 5.0115 4.9040 0.3492 9 6 3.9951 5.5850 -1.4239 10 6 4.8716 4.7282 -2.3009 11 8 5.5269 3.8375 -1.8139 12 8 4.9243 4.9546 -3.6228 13 7 3.2649 5.9348 0.8838 14 6 3.9135 6.9680 1.4569 15 8 5.1116 7.0873 1.3121 16 6 3.1497 7.9751 2.2776 17 6 4.1147 9.0359 2.8105 18 6 3.3393 10.0587 3.6433 19 6 4.2899 11.1033 4.1687 20 1 5.3420 11.0438 3.9320 21 6 3.8165 12.1354 4.9508 22 7 2.5353 12.2080 5.2386 23 14 4.9948 13.4306 5.6015 24 1 6.3720 13.1244 5.1380 25 1 4.5889 14.7671 5.0972 26 1 4.9601 13.4302 7.0861 27 6 1.9212 3.6048 -0.0021 28 6 1.2916 2.3752 -0.0016 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8898 31 1 -0.3632 0.5138 -0.8901 32 1 4.0209 0.3798 0.0018 33 1 5.1346 2.5748 0.0049 34 1 2.9795 5.5899 -1.8195 35 1 4.3832 6.6034 -1.4067 36 1 5.5009 4.3794 -4.1442 37 1 2.3206 5.7981 1.0584 38 1 2.3926 8.4520 1.6551 39 1 2.6667 7.4705 3.1145 40 1 4.8715 8.5587 3.4332 41 1 4.5980 9.5406 1.9739 42 1 2.5827 10.5359 3.0203 43 1 2.8556 9.5543 4.4799 44 1 2.2022 12.9339 5.7891 45 1 1.3344 4.5114 -0.0038 46 1 0.2130 2.3202 -0.0025 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599509457.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:41 Heat of formation + Delta-G solvation = -182.087316 kcal Electronic energy + Delta-G solvation = -28105.645545 eV Core-core repulsion = 23959.003161 eV Total energy + Delta-G solvation = -4146.642384 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.83485 -40.90044 -40.63041 -38.81039 -37.10043 -36.36435 -35.93493 -34.04081 -32.67815 -32.06529 -30.57655 -29.65894 -28.19106 -26.33470 -25.11794 -23.76444 -22.88783 -22.33243 -21.28128 -21.13801 -19.22952 -19.15643 -18.64356 -18.02044 -17.93116 -17.06168 -16.92627 -16.64622 -16.61119 -16.53600 -16.44649 -15.88528 -15.36099 -15.05258 -14.74706 -14.64506 -14.45023 -14.17387 -14.13033 -13.93199 -13.73610 -13.51464 -13.23912 -13.00627 -12.80624 -12.59772 -12.50881 -12.49494 -12.36496 -12.14982 -11.93096 -11.74290 -11.57806 -11.51265 -11.44149 -11.22628 -10.78642 -10.52585 -10.25132 -9.96225 -9.14557 -8.18738 -6.27870 0.32282 0.37416 1.22700 1.39993 1.40748 1.54139 1.60997 1.87226 2.36460 2.41542 2.47520 2.75134 3.14387 3.50683 3.72620 3.79400 3.94799 3.97019 4.16569 4.27269 4.30416 4.32865 4.39161 4.41675 4.42433 4.51681 4.63811 4.66009 4.76017 4.79032 4.89241 5.02494 5.06001 5.15551 5.21850 5.23099 5.30534 5.37312 5.57611 5.62132 5.64978 5.79329 5.79882 5.90477 6.30339 6.42838 6.53885 6.88102 6.99956 7.26379 7.40624 8.92807 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014442 B = 0.002170 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.339234 B =12897.334625 C =14258.545024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.338 6.338 3 C 0.121 3.879 4 C -0.171 4.171 5 C -0.052 4.052 6 C -0.144 4.144 7 C 0.207 3.793 8 H 0.077 0.923 9 C -0.122 4.122 10 C 0.487 3.513 11 O -0.535 6.535 12 O -0.514 6.514 13 N -0.710 5.710 14 C 0.520 3.480 15 O -0.578 6.578 16 C -0.130 4.130 17 C -0.084 4.084 18 C 0.025 3.975 19 C -0.545 4.545 20 H 0.050 0.950 21 C 0.003 3.997 22 N -0.928 5.928 23 Si 0.960 3.040 24 H -0.269 1.269 25 H -0.275 1.275 26 H -0.276 1.276 27 C -0.068 4.068 28 C -0.207 4.207 29 H 0.116 0.884 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.131 0.869 33 H 0.126 0.874 34 H 0.136 0.864 35 H 0.109 0.891 36 H 0.427 0.573 37 H 0.418 0.582 38 H 0.116 0.884 39 H 0.108 0.892 40 H 0.037 0.963 41 H 0.042 0.958 42 H 0.004 0.996 43 H 0.001 0.999 44 H 0.264 0.736 45 H 0.155 0.845 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.576 -24.548 -17.743 31.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.252 6.252 3 C 0.076 3.924 4 C -0.189 4.189 5 C -0.071 4.071 6 C -0.145 4.145 7 C 0.101 3.899 8 H 0.095 0.905 9 C -0.161 4.161 10 C 0.330 3.670 11 O -0.425 6.425 12 O -0.328 6.328 13 N -0.364 5.364 14 C 0.309 3.691 15 O -0.457 6.457 16 C -0.169 4.169 17 C -0.122 4.122 18 C -0.012 4.012 19 C -0.583 4.583 20 H 0.068 0.932 21 C -0.195 4.195 22 N -0.569 5.569 23 Si 0.784 3.216 24 H -0.193 1.193 25 H -0.201 1.201 26 H -0.202 1.202 27 C -0.086 4.086 28 C -0.226 4.226 29 H 0.134 0.866 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.149 0.851 33 H 0.144 0.856 34 H 0.154 0.846 35 H 0.127 0.873 36 H 0.289 0.711 37 H 0.257 0.743 38 H 0.134 0.866 39 H 0.126 0.874 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.022 0.978 43 H 0.019 0.981 44 H 0.073 0.927 45 H 0.173 0.827 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -6.860 -24.540 -17.409 30.860 hybrid contribution 0.587 0.389 0.251 0.748 sum -6.272 -24.150 -17.159 30.282 Atomic orbital electron populations 1.23358 0.76298 1.05574 1.02458 1.86053 1.23616 1.26983 1.88513 1.19261 0.92367 0.85024 0.95746 1.20545 0.92097 0.98654 1.07650 1.20945 1.00260 0.91005 0.94846 1.19654 0.94338 0.93428 1.07052 1.19202 0.96729 0.85771 0.88151 0.90510 1.21771 1.02079 0.99571 0.92643 1.23281 0.79983 0.82092 0.81640 1.90701 1.43498 1.32959 1.75348 1.84490 1.66488 1.61574 1.20222 1.45945 1.14491 1.27955 1.48025 1.21135 0.87518 0.81816 0.78632 1.90691 1.16881 1.75809 1.62330 1.21696 0.99358 0.95334 1.00543 1.21171 0.97225 0.95374 0.98443 1.19028 0.94859 0.93117 0.94162 1.21730 0.94949 1.10263 1.31369 0.93185 1.25882 0.96874 1.00235 0.96535 1.70063 1.14466 1.33376 1.38971 0.85481 0.79151 0.78775 0.78149 1.19332 1.20071 1.20186 1.21008 0.92947 0.98498 0.96118 1.21456 1.01317 0.91452 1.08348 0.86568 0.91579 0.91405 0.85133 0.85620 0.84643 0.87260 0.71107 0.74284 0.86601 0.87369 0.94364 0.93897 0.97787 0.98098 0.92707 0.82735 0.82690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.34 -5.73 10.50 -92.45 -0.97 -6.70 16 3 C 0.12 2.21 6.69 22.51 0.15 2.36 16 4 C -0.17 -3.49 9.99 22.36 0.22 -3.26 16 5 C -0.05 -1.12 8.14 22.25 0.18 -0.94 16 6 C -0.14 -2.69 4.51 -19.85 -0.09 -2.78 16 7 C 0.21 4.32 2.01 44.24 0.09 4.40 16 8 H 0.08 2.16 7.00 -2.38 -0.02 2.14 16 9 C -0.12 -2.13 5.56 29.85 0.17 -1.96 16 10 C 0.49 9.38 8.01 71.24 0.57 9.95 16 11 O -0.54 -13.09 13.62 21.95 0.30 -12.80 16 12 O -0.51 -7.26 13.42 -51.38 -0.69 -7.95 16 13 N -0.71 -14.09 5.02 -446.09 -2.24 -16.33 16 14 C 0.52 15.11 7.80 87.66 0.68 15.80 16 15 O -0.58 -22.27 15.60 -3.02 -0.05 -22.32 16 16 C -0.13 -3.86 5.70 29.85 0.17 -3.69 16 17 C -0.08 -3.57 4.44 30.59 0.14 -3.43 16 18 C 0.03 1.32 4.97 29.85 0.15 1.47 16 19 C -0.55 -31.79 9.11 25.60 0.23 -31.55 16 20 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 21 C 0.00 0.15 5.46 84.66 0.46 0.62 16 22 N -0.93 -55.82 13.29 21.45 0.28 -55.54 16 23 Si 0.96 45.07 29.54 68.60 2.03 47.09 16 24 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 25 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 26 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 27 C -0.07 -0.93 9.04 22.25 0.20 -0.73 16 28 C -0.21 -2.88 9.04 22.37 0.20 -2.67 16 29 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 0.42 7.66 -2.39 -0.02 0.40 16 31 H 0.07 0.38 7.66 -2.39 -0.02 0.37 16 32 H 0.13 2.49 8.06 -2.91 -0.02 2.47 16 33 H 0.13 3.01 6.87 -2.91 -0.02 2.99 16 34 H 0.14 1.55 8.12 -2.39 -0.02 1.53 16 35 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.43 2.57 9.10 -74.05 -0.67 1.90 16 37 H 0.42 5.41 6.87 -92.71 -0.64 4.77 16 38 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 39 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 40 H 0.04 1.72 8.10 -2.39 -0.02 1.70 16 41 H 0.04 1.90 8.10 -2.39 -0.02 1.88 16 42 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 43 H 0.00 0.03 8.14 -2.39 -0.02 0.02 16 44 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 45 H 0.16 1.15 6.90 -2.91 -0.02 1.13 16 46 H 0.16 1.28 6.30 -2.91 -0.02 1.26 16 Total: -1.00 -80.02 388.23 3.01 -77.01 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -0.29 Total: 12.73 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: 4.64 Total: -15.19 kcal Atomic # 7 Polarization: -69.92 SS G_CDS: -1.95 Total: -71.87 kcal Atomic # 8 Polarization: -48.36 SS G_CDS: -1.41 Total: -49.77 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -80.02 3.01 -77.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599509457.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.080 kcal (2) G-P(sol) polarization free energy of solvation -80.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds