Wall clock time and date at job start Tue Mar 31 2020 18:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35996 * 117.00382 * 2 1 4 4 C 1.38565 * 120.06666 * 359.97438 * 3 2 1 5 5 C 1.38247 * 119.99352 * 179.97438 * 4 3 2 6 6 C 1.38249 * 120.14870 * 359.97438 * 5 4 3 7 7 C 1.50695 * 119.92633 * 180.02562 * 6 5 4 8 8 N 1.46510 * 109.47306 * 87.93395 * 7 6 5 9 9 C 1.36930 * 119.99713 * 95.82932 * 8 7 6 10 10 H 1.08000 * 119.99803 * 218.98702 * 9 8 7 11 11 C 1.38815 * 120.00271 * 39.27186 * 9 8 7 12 12 N 1.31618 * 120.00129 * 19.43962 * 11 9 8 13 13 Si 1.86800 * 119.99898 * 199.44403 * 11 9 8 14 14 H 1.48502 * 109.47344 * 89.99935 * 13 11 9 15 15 H 1.48504 * 109.46819 * 209.99773 * 13 11 9 16 16 H 1.48500 * 109.47409 * 329.99819 * 13 11 9 17 17 C 1.46493 * 119.99670 * 275.83207 * 8 7 6 18 18 C 1.53001 * 109.47166 * 269.99636 * 17 8 7 19 19 C 1.50706 * 109.47110 * 180.02562 * 18 17 8 20 20 O 1.20830 * 119.99625 * 0.02562 * 19 18 17 21 21 O 1.34229 * 120.00059 * 179.97438 * 19 18 17 22 22 C 1.38240 * 120.14548 * 0.27036 * 6 5 4 23 23 C 1.38564 * 119.99751 * 359.45958 * 22 6 5 24 24 O 1.36001 * 120.07186 * 180.29548 * 23 22 6 25 25 C 1.42902 * 117.00194 * 5.40395 * 24 23 22 26 26 C 1.52996 * 117.50096 * 221.08582 * 25 24 23 27 27 C 1.52993 * 60.00085 * 252.51074 * 26 25 24 28 28 H 1.09008 * 109.46994 * 60.00708 * 1 2 3 29 29 H 1.09004 * 109.47424 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47531 * 300.00566 * 1 2 3 31 31 H 1.07998 * 120.00379 * 359.95635 * 4 3 2 32 32 H 1.08006 * 119.92360 * 179.97438 * 5 4 3 33 33 H 1.08997 * 109.47383 * 327.93621 * 7 6 5 34 34 H 1.08996 * 109.47324 * 207.93335 * 7 6 5 35 35 H 0.96991 * 120.00458 * 180.02562 * 12 11 9 36 36 H 1.08996 * 109.47655 * 29.99937 * 17 8 7 37 37 H 1.09007 * 109.46731 * 149.99814 * 17 8 7 38 38 H 1.08999 * 109.46884 * 299.99911 * 18 17 8 39 39 H 1.08994 * 109.47264 * 60.00610 * 18 17 8 40 40 H 0.96693 * 116.99593 * 180.02562 * 21 19 18 41 41 H 1.08005 * 120.00225 * 179.70287 * 22 6 5 42 42 H 1.09004 * 115.54988 * 6.79352 * 25 24 23 43 43 H 1.09000 * 117.49679 * 0.02562 * 26 25 24 44 44 H 1.09001 * 117.50138 * 145.01426 * 26 25 24 45 45 H 1.09001 * 117.49776 * 252.51217 * 27 26 25 46 46 H 1.08994 * 117.50183 * 107.49177 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3747 -0.0005 5 6 1.9225 3.6057 0.0000 6 6 3.3030 3.6797 0.0016 7 6 3.9837 5.0242 0.0028 8 7 4.1583 5.4820 1.3835 9 6 5.3443 5.2640 2.0322 10 1 5.3460 4.9910 3.0771 11 6 6.5447 5.3998 1.3484 12 7 6.5895 6.0888 0.2279 13 14 8.0964 4.6045 2.0185 14 1 8.2253 3.2307 1.4695 15 1 9.2780 5.4102 1.6184 16 1 8.0197 4.5403 3.5001 17 6 3.0640 6.1729 2.0699 18 6 3.1795 7.6790 1.8265 19 6 2.0541 8.3899 2.5332 20 8 1.2432 7.7567 3.1669 21 8 1.9532 9.7263 2.4595 22 6 4.0603 2.5233 -0.0030 23 6 3.4359 1.2863 0.0022 24 8 4.1795 0.1476 0.0038 25 6 5.5958 0.2977 0.1199 26 6 6.4753 -0.6007 -0.7519 27 6 6.3787 -0.8538 0.7538 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.2146 2.3196 -0.0017 32 1 1.3342 4.5115 -0.0008 33 1 3.3715 5.7419 -0.5433 34 1 4.9584 4.9384 -0.4775 35 1 7.4281 6.1834 -0.2501 36 1 2.1095 5.8147 1.6844 37 1 3.1221 5.9722 3.1398 38 1 4.1340 8.0372 2.2122 39 1 3.1214 7.8797 0.7568 40 1 1.2149 10.1373 2.9296 41 1 5.1386 2.5838 -0.0065 42 1 5.9468 1.3114 0.3131 43 1 5.9736 -1.3061 -1.4144 44 1 7.4052 -0.1781 -1.1327 45 1 7.2450 -0.5977 1.3638 46 1 5.8135 -1.7259 1.0824 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599559131.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:21 Heat of formation + Delta-G solvation = -85.970611 kcal Electronic energy + Delta-G solvation = -29424.323419 eV Core-core repulsion = 25281.848969 eV Total energy + Delta-G solvation = -4142.474451 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.18061 -39.80062 -38.48004 -37.29871 -35.96589 -35.51781 -34.80028 -32.09537 -30.93058 -29.64249 -29.11634 -27.31585 -25.25902 -24.75092 -23.40833 -22.36302 -21.95725 -20.88764 -20.60145 -19.79390 -18.27468 -17.74750 -17.10739 -16.64806 -16.18849 -15.97835 -15.59357 -15.57910 -14.91043 -14.80669 -14.46939 -14.26387 -14.01380 -13.75980 -13.64574 -13.58401 -13.13014 -12.76014 -12.52224 -12.23620 -11.94525 -11.81372 -11.53575 -11.49323 -11.35794 -11.18636 -11.05049 -10.89577 -10.69991 -10.65656 -10.47192 -10.32424 -10.21318 -10.10530 -10.06179 -9.92878 -9.75921 -8.64828 -8.12190 -7.28100 -6.76977 -5.97927 -3.55001 1.80619 1.95647 2.63368 3.23279 3.32518 3.33971 3.35724 3.50880 3.56084 3.87553 4.24406 4.38105 4.85576 5.01331 5.11267 5.15118 5.17162 5.25675 5.29646 5.37571 5.48280 5.52691 5.58052 5.66129 5.69135 5.80038 5.82549 5.88805 5.99752 6.04989 6.09721 6.14874 6.19279 6.36189 6.53558 6.65848 6.69551 6.76686 6.86144 6.97586 7.19088 7.25626 7.42289 7.53402 7.69822 7.98793 8.26556 8.38043 9.01428 9.60997 10.21179 11.04094 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.008715 B = 0.004597 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3212.219177 B = 6089.028311 C = 8769.496378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.314 6.314 3 C 0.075 3.925 4 C -0.173 4.173 5 C -0.118 4.118 6 C -0.067 4.067 7 C 0.181 3.819 8 N -0.569 5.569 9 C -0.262 4.262 10 H 0.062 0.938 11 C 0.018 3.982 12 N -0.883 5.883 13 Si 0.893 3.107 14 H -0.285 1.285 15 H -0.289 1.289 16 H -0.275 1.275 17 C 0.161 3.839 18 C -0.130 4.130 19 C 0.478 3.522 20 O -0.528 6.528 21 O -0.525 6.525 22 C -0.150 4.150 23 C 0.096 3.904 24 O -0.279 6.279 25 C 0.006 3.994 26 C -0.184 4.184 27 C -0.176 4.176 28 H 0.050 0.950 29 H 0.092 0.908 30 H 0.051 0.949 31 H 0.125 0.875 32 H 0.118 0.882 33 H 0.037 0.963 34 H 0.102 0.898 35 H 0.258 0.742 36 H 0.046 0.954 37 H 0.053 0.947 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.398 0.602 41 H 0.136 0.864 42 H 0.130 0.870 43 H 0.100 0.900 44 H 0.102 0.898 45 H 0.104 0.896 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.077 -5.478 -2.223 9.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.228 6.228 3 C 0.030 3.970 4 C -0.192 4.192 5 C -0.137 4.137 6 C -0.070 4.070 7 C 0.055 3.945 8 N -0.288 5.288 9 C -0.392 4.392 10 H 0.080 0.920 11 C -0.183 4.183 12 N -0.524 5.524 13 Si 0.722 3.278 14 H -0.211 1.211 15 H -0.215 1.215 16 H -0.200 1.200 17 C 0.034 3.966 18 C -0.171 4.171 19 C 0.321 3.679 20 O -0.417 6.417 21 O -0.336 6.336 22 C -0.169 4.169 23 C 0.051 3.949 24 O -0.192 6.192 25 C -0.051 4.051 26 C -0.221 4.221 27 C -0.213 4.213 28 H 0.068 0.932 29 H 0.111 0.889 30 H 0.069 0.931 31 H 0.143 0.857 32 H 0.136 0.864 33 H 0.055 0.945 34 H 0.120 0.880 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.126 0.874 39 H 0.114 0.886 40 H 0.255 0.745 41 H 0.154 0.846 42 H 0.147 0.853 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.777 -6.167 -2.378 9.466 hybrid contribution 0.213 0.261 0.677 0.756 sum -6.564 -5.906 -1.701 8.992 Atomic orbital electron populations 1.22940 0.79511 1.03121 1.00945 1.86110 1.20250 1.26587 1.89900 1.18052 0.88846 0.84773 1.05346 1.20922 0.99089 0.91770 1.07444 1.20785 0.94453 0.96303 1.02131 1.20961 0.93014 0.97976 0.95042 1.19953 1.00420 0.86996 0.87116 1.43751 1.11615 1.61577 1.11812 1.19095 0.82645 1.41620 0.95837 0.91988 1.25230 0.97771 0.97476 0.97839 1.69979 1.26187 1.38299 1.17954 0.86445 0.82926 0.79205 0.79214 1.21136 1.21538 1.20045 1.20789 0.91592 0.86701 0.97524 1.22382 0.94888 0.98795 1.01008 1.24419 0.86040 0.79568 0.77826 1.90659 1.42923 1.67225 1.40893 1.84660 1.53417 1.24140 1.71342 1.21023 1.00637 0.90212 1.05013 1.18204 0.87763 0.85961 1.02929 1.86026 1.16610 1.28695 1.87901 1.23069 0.79232 0.97616 1.05197 1.23397 1.01332 1.03401 0.94015 1.23323 1.01905 1.00286 0.95819 0.93151 0.88915 0.93058 0.85709 0.86364 0.94499 0.88046 0.93232 0.93563 0.92816 0.87414 0.88556 0.74516 0.84643 0.85270 0.88124 0.87929 0.87812 0.88086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 16 2 O -0.31 -5.19 10.28 -34.23 -0.35 -5.54 16 3 C 0.07 1.33 6.70 -39.12 -0.26 1.07 16 4 C -0.17 -2.82 9.04 -39.46 -0.36 -3.18 16 5 C -0.12 -2.06 9.29 -39.57 -0.37 -2.43 16 6 C -0.07 -1.31 5.45 -104.62 -0.57 -1.88 16 7 C 0.18 3.86 5.34 -5.19 -0.03 3.83 16 8 N -0.57 -12.83 2.40 -174.61 -0.42 -13.25 16 9 C -0.26 -6.53 9.45 -15.06 -0.14 -6.67 16 10 H 0.06 1.59 7.90 -52.49 -0.41 1.18 16 11 C 0.02 0.45 4.93 -17.43 -0.09 0.37 16 12 N -0.88 -22.82 11.56 55.49 0.64 -22.18 16 13 Si 0.89 19.93 29.60 -169.99 -5.03 14.90 16 14 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 15 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 17 C 0.16 3.24 4.98 -4.05 -0.02 3.22 16 18 C -0.13 -2.36 6.14 -27.88 -0.17 -2.53 16 19 C 0.48 7.93 8.33 36.01 0.30 8.23 16 20 O -0.53 -9.96 16.74 -18.75 -0.31 -10.27 16 21 O -0.52 -7.08 13.42 -39.25 -0.53 -7.61 16 22 C -0.15 -2.95 8.78 -39.46 -0.35 -3.29 16 23 C 0.10 1.84 6.69 -39.12 -0.26 1.58 16 24 O -0.28 -5.16 10.18 -34.24 -0.35 -5.51 16 25 C 0.01 0.09 6.18 -26.74 -0.17 -0.07 16 26 C -0.18 -2.41 10.48 -26.74 -0.28 -2.69 16 27 C -0.18 -2.34 10.48 -26.74 -0.28 -2.62 16 28 H 0.05 0.50 7.66 -51.92 -0.40 0.11 16 29 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.54 7.67 -51.93 -0.40 0.14 16 31 H 0.13 1.65 6.30 -52.49 -0.33 1.32 16 32 H 0.12 1.89 7.64 -52.48 -0.40 1.49 16 33 H 0.04 0.74 8.07 -51.93 -0.42 0.33 16 34 H 0.10 2.42 5.59 -51.93 -0.29 2.13 16 35 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 36 H 0.05 0.89 7.18 -51.93 -0.37 0.52 16 37 H 0.05 1.14 8.00 -51.92 -0.42 0.72 16 38 H 0.11 2.10 8.14 -51.93 -0.42 1.67 16 39 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 40 H 0.40 3.44 9.10 45.56 0.41 3.85 16 41 H 0.14 2.72 5.60 -52.48 -0.29 2.43 16 42 H 0.13 2.21 5.41 -51.93 -0.28 1.93 16 43 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 44 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 45 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 388.97 15.07 5.86 5.86 Total: -1.00 -29.92 388.97 -8.23 -38.15 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -5.69 Total: 11.19 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -2.05 Total: -5.73 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: 0.22 Total: -35.43 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -1.54 Total: -28.94 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.03 Total: 14.90 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.92 -8.23 -38.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599559131.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.823 kcal (2) G-P(sol) polarization free energy of solvation -29.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds