Wall clock time and date at job start Tue Mar 31 2020 18:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35996 * 117.00382 * 2 1 4 4 C 1.38565 * 120.06666 * 359.97438 * 3 2 1 5 5 C 1.38247 * 119.99352 * 179.97438 * 4 3 2 6 6 C 1.38249 * 120.14870 * 359.97438 * 5 4 3 7 7 C 1.50695 * 119.92633 * 180.02562 * 6 5 4 8 8 N 1.46510 * 109.47306 * 87.93395 * 7 6 5 9 9 C 1.36930 * 119.99713 * 95.82932 * 8 7 6 10 10 H 1.08000 * 119.99803 * 218.98702 * 9 8 7 11 11 C 1.38815 * 120.00271 * 39.27186 * 9 8 7 12 12 N 1.31618 * 120.00129 * 19.43962 * 11 9 8 13 13 Si 1.86800 * 119.99898 * 199.44403 * 11 9 8 14 14 H 1.48502 * 109.47344 * 89.99935 * 13 11 9 15 15 H 1.48504 * 109.46819 * 209.99773 * 13 11 9 16 16 H 1.48500 * 109.47409 * 329.99819 * 13 11 9 17 17 C 1.46493 * 119.99670 * 275.83207 * 8 7 6 18 18 C 1.53001 * 109.47166 * 269.99636 * 17 8 7 19 19 C 1.50706 * 109.47110 * 180.02562 * 18 17 8 20 20 O 1.20830 * 119.99625 * 0.02562 * 19 18 17 21 21 O 1.34229 * 120.00059 * 179.97438 * 19 18 17 22 22 C 1.38240 * 120.14548 * 0.27036 * 6 5 4 23 23 C 1.38564 * 119.99751 * 359.45958 * 22 6 5 24 24 O 1.36001 * 120.07186 * 180.29548 * 23 22 6 25 25 C 1.42902 * 117.00194 * 5.40395 * 24 23 22 26 26 C 1.52996 * 117.50096 * 221.08582 * 25 24 23 27 27 C 1.52993 * 60.00085 * 252.51074 * 26 25 24 28 28 H 1.09008 * 109.46994 * 60.00708 * 1 2 3 29 29 H 1.09004 * 109.47424 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47531 * 300.00566 * 1 2 3 31 31 H 1.07998 * 120.00379 * 359.95635 * 4 3 2 32 32 H 1.08006 * 119.92360 * 179.97438 * 5 4 3 33 33 H 1.08997 * 109.47383 * 327.93621 * 7 6 5 34 34 H 1.08996 * 109.47324 * 207.93335 * 7 6 5 35 35 H 0.96991 * 120.00458 * 180.02562 * 12 11 9 36 36 H 1.08996 * 109.47655 * 29.99937 * 17 8 7 37 37 H 1.09007 * 109.46731 * 149.99814 * 17 8 7 38 38 H 1.08999 * 109.46884 * 299.99911 * 18 17 8 39 39 H 1.08994 * 109.47264 * 60.00610 * 18 17 8 40 40 H 0.96693 * 116.99593 * 180.02562 * 21 19 18 41 41 H 1.08005 * 120.00225 * 179.70287 * 22 6 5 42 42 H 1.09004 * 115.54988 * 6.79352 * 25 24 23 43 43 H 1.09000 * 117.49679 * 0.02562 * 26 25 24 44 44 H 1.09001 * 117.50138 * 145.01426 * 26 25 24 45 45 H 1.09001 * 117.49776 * 252.51217 * 27 26 25 46 46 H 1.08994 * 117.50183 * 107.49177 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3747 -0.0005 5 6 1.9225 3.6057 0.0000 6 6 3.3030 3.6797 0.0016 7 6 3.9837 5.0242 0.0028 8 7 4.1583 5.4820 1.3835 9 6 5.3443 5.2640 2.0322 10 1 5.3460 4.9910 3.0771 11 6 6.5447 5.3998 1.3484 12 7 6.5895 6.0888 0.2279 13 14 8.0964 4.6045 2.0185 14 1 8.2253 3.2307 1.4695 15 1 9.2780 5.4102 1.6184 16 1 8.0197 4.5403 3.5001 17 6 3.0640 6.1729 2.0699 18 6 3.1795 7.6790 1.8265 19 6 2.0541 8.3899 2.5332 20 8 1.2432 7.7567 3.1669 21 8 1.9532 9.7263 2.4595 22 6 4.0603 2.5233 -0.0030 23 6 3.4359 1.2863 0.0022 24 8 4.1795 0.1476 0.0038 25 6 5.5958 0.2977 0.1199 26 6 6.4753 -0.6007 -0.7519 27 6 6.3787 -0.8538 0.7538 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.2146 2.3196 -0.0017 32 1 1.3342 4.5115 -0.0008 33 1 3.3715 5.7419 -0.5433 34 1 4.9584 4.9384 -0.4775 35 1 7.4281 6.1834 -0.2501 36 1 2.1095 5.8147 1.6844 37 1 3.1221 5.9722 3.1398 38 1 4.1340 8.0372 2.2122 39 1 3.1214 7.8797 0.7568 40 1 1.2149 10.1373 2.9296 41 1 5.1386 2.5838 -0.0065 42 1 5.9468 1.3114 0.3131 43 1 5.9736 -1.3061 -1.4144 44 1 7.4052 -0.1781 -1.1327 45 1 7.2450 -0.5977 1.3638 46 1 5.8135 -1.7259 1.0824 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599559131.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:21 Heat of formation + Delta-G solvation = -102.389955 kcal Electronic energy + Delta-G solvation = -29425.035416 eV Core-core repulsion = 25281.848969 eV Total energy + Delta-G solvation = -4143.186447 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.51155 -41.12856 -39.70742 -38.74287 -37.32051 -36.90088 -36.10296 -33.88603 -32.44589 -31.03672 -30.62965 -28.48554 -26.86757 -26.31323 -24.71459 -23.48908 -23.40810 -22.31846 -21.88204 -21.31284 -19.63493 -19.07615 -18.61507 -18.11700 -17.53904 -17.35447 -16.97534 -16.76474 -16.63853 -16.02054 -15.78744 -15.56369 -15.46241 -15.30920 -15.22377 -14.90893 -14.36253 -14.21808 -13.98895 -13.61497 -13.30842 -13.20044 -12.98968 -12.84035 -12.73702 -12.50078 -12.47281 -12.40832 -12.24355 -12.08529 -11.97613 -11.82224 -11.75066 -11.57574 -11.51253 -11.45687 -10.97918 -10.54480 -9.52157 -8.64917 -8.60311 -7.87435 -5.47848 0.41221 0.53669 1.29344 1.43485 1.48539 1.55206 2.07258 2.24275 2.42232 2.51188 2.70615 2.89881 3.25679 3.64254 3.87137 3.93544 3.96214 3.98157 4.05287 4.12963 4.23808 4.27804 4.36807 4.44875 4.50686 4.62125 4.63621 4.66989 4.68918 4.75903 4.76532 4.84448 4.88879 4.97085 5.08696 5.12671 5.27056 5.29760 5.43881 5.57079 5.68229 5.71120 5.81956 5.94013 6.18088 6.47758 6.67874 7.09445 7.15379 7.78718 8.34794 9.11104 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.008715 B = 0.004597 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3212.219177 B = 6089.028311 C = 8769.496378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.333 6.333 3 C 0.073 3.927 4 C -0.163 4.163 5 C -0.116 4.116 6 C -0.085 4.085 7 C 0.190 3.810 8 N -0.580 5.580 9 C -0.269 4.269 10 H 0.048 0.952 11 C -0.015 4.015 12 N -0.904 5.904 13 Si 0.940 3.060 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.276 1.276 17 C 0.165 3.835 18 C -0.121 4.121 19 C 0.494 3.506 20 O -0.551 6.551 21 O -0.515 6.515 22 C -0.162 4.162 23 C 0.080 3.920 24 O -0.290 6.290 25 C -0.032 4.032 26 C -0.166 4.166 27 C -0.162 4.162 28 H 0.066 0.934 29 H 0.118 0.882 30 H 0.061 0.939 31 H 0.162 0.838 32 H 0.136 0.864 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.255 0.745 36 H 0.056 0.944 37 H 0.038 0.962 38 H 0.092 0.908 39 H 0.101 0.899 40 H 0.423 0.577 41 H 0.120 0.880 42 H 0.111 0.889 43 H 0.108 0.892 44 H 0.117 0.883 45 H 0.117 0.883 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.687 -6.097 -2.271 10.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.248 6.248 3 C 0.028 3.972 4 C -0.182 4.182 5 C -0.135 4.135 6 C -0.088 4.088 7 C 0.064 3.936 8 N -0.299 5.299 9 C -0.399 4.399 10 H 0.065 0.935 11 C -0.214 4.214 12 N -0.546 5.546 13 Si 0.768 3.232 14 H -0.206 1.206 15 H -0.218 1.218 16 H -0.201 1.201 17 C 0.038 3.962 18 C -0.162 4.162 19 C 0.338 3.662 20 O -0.442 6.442 21 O -0.328 6.328 22 C -0.181 4.181 23 C 0.035 3.965 24 O -0.204 6.204 25 C -0.089 4.089 26 C -0.203 4.203 27 C -0.199 4.199 28 H 0.084 0.916 29 H 0.136 0.864 30 H 0.080 0.920 31 H 0.179 0.821 32 H 0.154 0.846 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.110 0.890 39 H 0.119 0.881 40 H 0.285 0.715 41 H 0.137 0.863 42 H 0.128 0.872 43 H 0.127 0.873 44 H 0.135 0.865 45 H 0.135 0.865 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.414 -6.771 -2.420 11.068 hybrid contribution 0.596 0.430 0.699 1.015 sum -7.818 -6.341 -1.721 10.212 Atomic orbital electron populations 1.23322 0.76694 1.05353 1.02174 1.86091 1.23170 1.25935 1.89620 1.18256 0.88635 0.85938 1.04408 1.21248 1.00782 0.90513 1.05641 1.20955 0.93505 0.97699 1.01376 1.20810 0.94155 0.96831 0.96977 1.19742 0.99227 0.88262 0.86336 1.43831 1.11435 1.62601 1.12079 1.19105 0.83925 1.41408 0.95459 0.93483 1.25675 0.99620 0.97959 0.98176 1.70066 1.26370 1.39386 1.18801 0.85715 0.80314 0.78634 0.78541 1.20597 1.21760 1.20100 1.20702 0.91183 0.87965 0.96339 1.22039 0.94986 0.97675 1.01479 1.23782 0.85008 0.80412 0.77043 1.90662 1.43660 1.68037 1.41840 1.84569 1.54658 1.22229 1.71351 1.20928 1.00024 0.90973 1.06204 1.18406 0.88797 0.85829 1.03490 1.85981 1.17705 1.28573 1.88165 1.23231 0.78666 0.97911 1.09051 1.23492 1.00812 1.01889 0.94109 1.23439 1.01373 0.98846 0.96281 0.91558 0.86416 0.92006 0.82075 0.84609 0.93709 0.90966 0.93587 0.92541 0.94363 0.88976 0.88076 0.71527 0.86276 0.87190 0.87321 0.86460 0.86511 0.87343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.81 113.37 1.11 1.48 16 2 O -0.33 -10.45 10.28 -79.63 -0.82 -11.26 16 3 C 0.07 2.53 6.70 22.57 0.15 2.68 16 4 C -0.16 -4.97 9.04 22.35 0.20 -4.77 16 5 C -0.12 -3.94 9.29 22.27 0.21 -3.73 16 6 C -0.08 -3.39 5.45 -19.86 -0.11 -3.50 16 7 C 0.19 8.33 5.34 85.63 0.46 8.79 16 8 N -0.58 -26.81 2.40 -706.35 -1.70 -28.50 16 9 C -0.27 -13.83 9.45 84.04 0.79 -13.03 16 10 H 0.05 2.52 7.90 -2.91 -0.02 2.50 16 11 C -0.02 -0.78 4.93 84.86 0.42 -0.36 16 12 N -0.90 -48.10 11.56 21.65 0.25 -47.85 16 13 Si 0.94 41.88 29.60 68.60 2.03 43.91 16 14 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 15 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 16 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 17 C 0.16 6.67 4.98 86.38 0.43 7.10 16 18 C -0.12 -4.36 6.14 29.85 0.18 -4.17 16 19 C 0.49 15.64 8.33 71.24 0.59 16.24 16 20 O -0.55 -19.99 16.74 21.95 0.37 -19.62 16 21 O -0.51 -12.62 13.42 -51.41 -0.69 -13.31 16 22 C -0.16 -6.64 8.78 22.35 0.20 -6.45 16 23 C 0.08 3.10 6.69 22.57 0.15 3.25 16 24 O -0.29 -10.94 10.18 -79.69 -0.81 -11.76 16 25 C -0.03 -1.06 6.18 30.59 0.19 -0.87 16 26 C -0.17 -4.19 10.48 30.59 0.32 -3.87 16 27 C -0.16 -4.17 10.48 30.59 0.32 -3.85 16 28 H 0.07 1.09 7.66 -2.38 -0.02 1.07 16 29 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.06 1.08 7.67 -2.39 -0.02 1.06 16 31 H 0.16 3.64 6.30 -2.91 -0.02 3.62 16 32 H 0.14 4.06 7.64 -2.91 -0.02 4.03 16 33 H 0.04 1.83 8.07 -2.39 -0.02 1.81 16 34 H 0.07 3.62 5.59 -2.39 -0.01 3.60 16 35 H 0.25 13.21 8.31 -92.72 -0.77 12.44 16 36 H 0.06 2.15 7.18 -2.39 -0.02 2.13 16 37 H 0.04 1.65 8.00 -2.38 -0.02 1.63 16 38 H 0.09 3.62 8.14 -2.39 -0.02 3.61 16 39 H 0.10 3.53 8.14 -2.39 -0.02 3.51 16 40 H 0.42 6.00 9.10 -74.06 -0.67 5.32 16 41 H 0.12 5.17 5.60 -2.91 -0.02 5.15 16 42 H 0.11 4.01 5.41 -2.39 -0.01 4.00 16 43 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 44 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 45 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 46 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -65.76 388.97 4.59 -61.17 By element: Atomic # 1 Polarization: 31.94 SS G_CDS: 0.34 Total: 32.28 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: 5.62 Total: -5.06 kcal Atomic # 7 Polarization: -74.90 SS G_CDS: -1.44 Total: -76.35 kcal Atomic # 8 Polarization: -54.00 SS G_CDS: -1.95 Total: -55.96 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -65.76 4.59 -61.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599559131.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.220 kcal (2) G-P(sol) polarization free energy of solvation -65.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds