Wall clock time and date at job start Tue Mar 31 2020 18:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35634 * 117.00055 * 2 1 4 4 C 1.38709 * 120.15412 * 0.02682 * 3 2 1 5 5 C 1.38050 * 120.08960 * 179.71987 * 4 3 2 6 6 C 1.38567 * 120.40346 * 0.51749 * 5 4 3 7 7 C 1.50700 * 119.84577 * 179.76451 * 6 5 4 8 8 N 1.46498 * 109.46769 * 269.71760 * 7 6 5 9 9 C 1.34777 * 119.99828 * 179.72341 * 8 7 6 10 10 O 1.21283 * 120.00222 * 0.28168 * 9 8 7 11 11 C 1.50703 * 120.00290 * 180.27728 * 9 8 7 12 12 C 1.52990 * 109.47398 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47353 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47600 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.47646 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99463 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00445 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99998 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00395 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47009 * 59.99434 * 19 17 15 21 21 H 1.48498 * 109.47590 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46858 * 299.99875 * 19 17 15 23 23 C 1.37758 * 120.30488 * 359.47860 * 6 5 4 24 24 C 1.39770 * 119.90598 * 0.26362 * 23 6 5 25 25 C 1.47396 * 120.20138 * 180.02562 * 24 23 6 26 26 O 1.21503 * 120.00250 * 179.97438 * 25 24 23 27 27 O 1.34758 * 119.99978 * 359.97438 * 25 24 23 28 28 H 1.09005 * 109.46705 * 299.99116 * 1 2 3 29 29 H 1.08998 * 109.47488 * 59.99169 * 1 2 3 30 30 H 1.08998 * 109.47092 * 180.02562 * 1 2 3 31 31 H 1.07995 * 119.95738 * 359.97438 * 4 3 2 32 32 H 1.08007 * 119.80141 * 180.25556 * 5 4 3 33 33 H 1.09004 * 109.47210 * 149.72118 * 7 6 5 34 34 H 1.08994 * 109.47121 * 29.72088 * 7 6 5 35 35 H 0.97001 * 120.00384 * 0.02562 * 8 7 6 36 36 H 1.08998 * 109.46954 * 300.00581 * 11 9 8 37 37 H 1.09002 * 109.46946 * 59.99717 * 11 9 8 38 38 H 1.08998 * 109.47508 * 300.00200 * 12 11 9 39 39 H 1.09011 * 109.47182 * 60.00188 * 12 11 9 40 40 H 1.08999 * 109.47616 * 300.00389 * 13 12 11 41 41 H 1.09003 * 109.47280 * 60.00024 * 13 12 11 42 42 H 1.08998 * 109.47382 * 300.00476 * 14 13 12 43 43 H 1.09005 * 109.46800 * 60.00677 * 14 13 12 44 44 H 0.96996 * 120.00393 * 180.02562 * 18 17 15 45 45 H 1.08000 * 120.04766 * 180.23888 * 23 6 5 46 46 H 0.96694 * 116.99992 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2085 0.0000 4 6 1.2925 2.3738 0.0006 5 6 1.9206 3.6032 0.0064 6 6 3.3039 3.6839 0.0009 7 6 3.9765 5.0325 0.0020 8 7 4.1948 5.4703 -1.3788 9 6 4.7812 6.6588 -1.6242 10 8 5.1328 7.3635 -0.7018 11 6 5.0002 7.1121 -3.0446 12 6 5.6785 8.4834 -3.0436 13 6 5.9013 8.9433 -4.4856 14 6 6.5803 10.3144 -4.4846 15 6 6.7993 10.7677 -5.9051 16 1 6.4859 10.1403 -6.7264 17 6 7.4005 11.9827 -6.1561 18 7 7.7826 12.7464 -5.1559 19 14 7.6713 12.5449 -7.9168 20 1 6.3628 12.6416 -8.6122 21 1 8.3315 13.8751 -7.9158 22 1 8.5354 11.5645 -8.6221 23 6 4.0672 2.5371 0.0004 24 6 3.4446 1.2857 -0.0001 25 6 4.2550 0.0544 -0.0001 26 8 3.7100 -1.0315 -0.0001 27 8 5.6002 0.1332 0.0000 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 0.2139 2.3194 0.0006 32 1 1.3303 4.5076 0.0110 33 1 4.9350 4.9601 0.5161 34 1 3.3421 5.7544 0.5162 35 1 3.9134 4.9069 -2.1166 36 1 5.6357 6.3931 -3.5616 37 1 4.0400 7.1817 -3.5559 38 1 5.0433 9.2026 -2.5265 39 1 6.6388 8.4134 -2.5324 40 1 6.5367 8.2241 -5.0024 41 1 4.9414 9.0133 -4.9972 42 1 5.9453 11.0339 -3.9678 43 1 7.5404 10.2440 -3.9733 44 1 8.2053 13.6014 -5.3325 45 1 5.1450 2.6049 0.0001 46 1 6.0888 -0.7012 -0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599565411.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:55 Heat of formation + Delta-G solvation = -162.649039 kcal Electronic energy + Delta-G solvation = -26991.934569 eV Core-core repulsion = 22846.135093 eV Total energy + Delta-G solvation = -4145.799477 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.28019 -39.90645 -39.65138 -38.25705 -36.35246 -35.12836 -34.65313 -32.62576 -32.18391 -31.36950 -29.68161 -28.21451 -26.41946 -25.23180 -24.97350 -22.68849 -22.25217 -21.09222 -20.28807 -19.94301 -18.84613 -18.39687 -17.39225 -16.81830 -16.65087 -16.51739 -16.24049 -15.93376 -15.73716 -15.71327 -15.08370 -14.66043 -14.53770 -14.40935 -14.07186 -13.67630 -13.61242 -13.17968 -12.92109 -12.67221 -12.58454 -12.16185 -12.03644 -11.88494 -11.81049 -11.68783 -11.64914 -11.56128 -10.95328 -10.85080 -10.52525 -10.50507 -10.38743 -9.88295 -9.75163 -9.59052 -9.22297 -9.20894 -8.99249 -8.80971 -8.28562 -5.93451 -3.96015 0.14938 0.66272 2.08383 2.57986 2.60335 2.72804 2.97485 3.36387 3.40394 3.40961 3.43193 4.07094 4.11120 4.26674 4.47359 4.50321 4.59627 4.63149 4.69748 4.89446 4.94342 4.98860 5.07576 5.31068 5.32410 5.39603 5.40674 5.42116 5.48331 5.58031 5.88660 5.91773 6.00846 6.10717 6.16209 6.25994 6.33104 6.57023 6.68234 6.86330 7.04339 7.22161 7.42065 7.54939 7.75736 7.92225 8.07986 8.25542 8.49753 9.11492 9.67463 11.17772 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.021183 B = 0.001549 C = 0.001530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.475332 B =18069.085054 C =18294.588960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.285 6.285 3 C 0.197 3.803 4 C -0.224 4.224 5 C -0.020 4.020 6 C -0.159 4.159 7 C 0.165 3.835 8 N -0.737 5.737 9 C 0.512 3.488 10 O -0.534 6.534 11 C -0.139 4.139 12 C -0.103 4.103 13 C -0.111 4.111 14 C 0.020 3.980 15 C -0.521 4.521 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.002 4.002 24 C -0.168 4.168 25 C 0.527 3.473 26 O -0.498 6.498 27 O -0.515 6.515 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.141 0.859 32 H 0.137 0.863 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.401 0.599 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.260 0.740 45 H 0.148 0.852 46 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.299 -28.867 13.380 35.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.195 6.195 3 C 0.149 3.851 4 C -0.243 4.243 5 C -0.038 4.038 6 C -0.159 4.159 7 C 0.042 3.958 8 N -0.391 5.391 9 C 0.300 3.700 10 O -0.410 6.410 11 C -0.178 4.178 12 C -0.141 4.141 13 C -0.148 4.148 14 C -0.017 4.017 15 C -0.559 4.559 16 H 0.072 0.928 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.021 4.021 24 C -0.170 4.170 25 C 0.371 3.629 26 O -0.387 6.387 27 O -0.327 6.327 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.123 0.877 31 H 0.159 0.841 32 H 0.155 0.845 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.235 0.765 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.070 0.930 45 H 0.166 0.834 46 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -15.243 -28.305 14.110 35.109 hybrid contribution 0.024 -0.390 -1.287 1.345 sum -15.219 -28.696 12.823 34.921 Atomic orbital electron populations 1.23241 0.77925 1.04721 1.01658 1.86335 1.21528 1.25419 1.86247 1.19070 0.90541 0.85243 0.90254 1.21236 1.00685 0.91537 1.10817 1.21211 0.93915 0.97583 0.91129 1.19798 0.93630 0.95042 1.07456 1.20070 1.00412 0.90895 0.84430 1.46210 1.63611 1.21277 1.07980 1.21129 0.76217 0.80119 0.92550 1.90716 1.49657 1.53989 1.46649 1.21796 1.03190 1.00666 0.92190 1.21450 1.00541 0.92999 0.99146 1.21650 1.00049 1.00039 0.93080 1.19096 0.95605 0.90290 0.96756 1.21252 1.38894 1.03157 0.92644 0.92818 1.25037 0.95787 0.96814 0.96910 1.69962 1.41198 1.11670 1.30609 0.86672 0.78329 0.77789 0.85259 1.20314 1.21326 1.20308 1.21309 1.00917 0.89481 0.90386 1.18337 0.89475 0.92055 1.17155 1.20496 0.80625 0.88926 0.72892 1.90943 1.72791 1.29602 1.45349 1.84555 1.19867 1.42151 1.86152 0.92193 0.92129 0.87671 0.84097 0.84516 0.90432 0.90491 0.76538 0.89110 0.89159 0.91814 0.91786 0.93482 0.93505 0.96591 0.96574 0.93007 0.83396 0.72622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.81 101.05 0.99 1.07 16 2 O -0.28 -2.48 8.57 -40.48 -0.35 -2.83 16 3 C 0.20 1.59 6.70 -38.67 -0.26 1.33 16 4 C -0.22 -1.29 9.03 -39.48 -0.36 -1.64 16 5 C -0.02 -0.11 9.68 -39.53 -0.38 -0.49 16 6 C -0.16 -1.05 5.24 -104.68 -0.55 -1.60 16 7 C 0.17 1.34 5.79 -5.19 -0.03 1.31 16 8 N -0.74 -6.66 5.55 -61.47 -0.34 -7.00 16 9 C 0.51 6.71 7.83 -10.98 -0.09 6.63 16 10 O -0.53 -9.34 15.98 5.55 0.09 -9.25 16 11 C -0.14 -1.77 5.70 -27.89 -0.16 -1.93 16 12 C -0.10 -1.83 4.50 -26.74 -0.12 -1.95 16 13 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 14 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 15 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 16 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.52 13.29 55.43 0.74 -26.78 16 19 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 C 0.00 -0.02 9.25 -39.18 -0.36 -0.38 16 24 C -0.17 -1.44 5.88 -104.86 -0.62 -2.06 16 25 C 0.53 4.96 8.26 34.46 0.28 5.25 16 26 O -0.50 -6.14 15.95 -26.59 -0.42 -6.56 16 27 O -0.51 -3.38 12.68 -40.65 -0.52 -3.90 16 28 H 0.06 0.16 7.66 -51.93 -0.40 -0.23 16 29 H 0.06 0.17 7.66 -51.93 -0.40 -0.23 16 30 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.14 0.48 6.30 -52.49 -0.33 0.15 16 32 H 0.14 0.55 8.06 -52.48 -0.42 0.12 16 33 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 34 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 35 H 0.40 2.68 8.46 -40.82 -0.35 2.33 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 39 H 0.06 1.21 8.10 -51.92 -0.42 0.79 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.15 0.94 7.61 -52.49 -0.40 0.55 16 46 H 0.41 0.97 9.11 45.56 0.42 1.39 16 LS Contribution 395.52 15.07 5.96 5.96 Total: -1.00 -38.13 395.52 -8.26 -46.39 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -6.06 Total: -2.63 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -2.33 Total: -10.31 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: 0.40 Total: -33.78 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -1.20 Total: -22.54 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -38.13 -8.26 -46.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599565411.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.258 kcal (2) G-P(sol) polarization free energy of solvation -38.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds