Wall clock time and date at job start Tue Mar 31 2020 18:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35634 * 117.00055 * 2 1 4 4 C 1.38709 * 120.15412 * 0.02682 * 3 2 1 5 5 C 1.38050 * 120.08960 * 179.71987 * 4 3 2 6 6 C 1.38567 * 120.40346 * 0.51749 * 5 4 3 7 7 C 1.50700 * 119.84577 * 179.76451 * 6 5 4 8 8 N 1.46498 * 109.46769 * 269.71760 * 7 6 5 9 9 C 1.34777 * 119.99828 * 179.72341 * 8 7 6 10 10 O 1.21283 * 120.00222 * 0.28168 * 9 8 7 11 11 C 1.50703 * 120.00290 * 180.27728 * 9 8 7 12 12 C 1.52990 * 109.47398 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47353 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47600 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.47646 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99463 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00445 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99998 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00395 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47009 * 59.99434 * 19 17 15 21 21 H 1.48498 * 109.47590 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46858 * 299.99875 * 19 17 15 23 23 C 1.37758 * 120.30488 * 359.47860 * 6 5 4 24 24 C 1.39770 * 119.90598 * 0.26362 * 23 6 5 25 25 C 1.47396 * 120.20138 * 180.02562 * 24 23 6 26 26 O 1.21503 * 120.00250 * 179.97438 * 25 24 23 27 27 O 1.34758 * 119.99978 * 359.97438 * 25 24 23 28 28 H 1.09005 * 109.46705 * 299.99116 * 1 2 3 29 29 H 1.08998 * 109.47488 * 59.99169 * 1 2 3 30 30 H 1.08998 * 109.47092 * 180.02562 * 1 2 3 31 31 H 1.07995 * 119.95738 * 359.97438 * 4 3 2 32 32 H 1.08007 * 119.80141 * 180.25556 * 5 4 3 33 33 H 1.09004 * 109.47210 * 149.72118 * 7 6 5 34 34 H 1.08994 * 109.47121 * 29.72088 * 7 6 5 35 35 H 0.97001 * 120.00384 * 0.02562 * 8 7 6 36 36 H 1.08998 * 109.46954 * 300.00581 * 11 9 8 37 37 H 1.09002 * 109.46946 * 59.99717 * 11 9 8 38 38 H 1.08998 * 109.47508 * 300.00200 * 12 11 9 39 39 H 1.09011 * 109.47182 * 60.00188 * 12 11 9 40 40 H 1.08999 * 109.47616 * 300.00389 * 13 12 11 41 41 H 1.09003 * 109.47280 * 60.00024 * 13 12 11 42 42 H 1.08998 * 109.47382 * 300.00476 * 14 13 12 43 43 H 1.09005 * 109.46800 * 60.00677 * 14 13 12 44 44 H 0.96996 * 120.00393 * 180.02562 * 18 17 15 45 45 H 1.08000 * 120.04766 * 180.23888 * 23 6 5 46 46 H 0.96694 * 116.99992 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2085 0.0000 4 6 1.2925 2.3738 0.0006 5 6 1.9206 3.6032 0.0064 6 6 3.3039 3.6839 0.0009 7 6 3.9765 5.0325 0.0020 8 7 4.1948 5.4703 -1.3788 9 6 4.7812 6.6588 -1.6242 10 8 5.1328 7.3635 -0.7018 11 6 5.0002 7.1121 -3.0446 12 6 5.6785 8.4834 -3.0436 13 6 5.9013 8.9433 -4.4856 14 6 6.5803 10.3144 -4.4846 15 6 6.7993 10.7677 -5.9051 16 1 6.4859 10.1403 -6.7264 17 6 7.4005 11.9827 -6.1561 18 7 7.7826 12.7464 -5.1559 19 14 7.6713 12.5449 -7.9168 20 1 6.3628 12.6416 -8.6122 21 1 8.3315 13.8751 -7.9158 22 1 8.5354 11.5645 -8.6221 23 6 4.0672 2.5371 0.0004 24 6 3.4446 1.2857 -0.0001 25 6 4.2550 0.0544 -0.0001 26 8 3.7100 -1.0315 -0.0001 27 8 5.6002 0.1332 0.0000 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 0.2139 2.3194 0.0006 32 1 1.3303 4.5076 0.0110 33 1 4.9350 4.9601 0.5161 34 1 3.3421 5.7544 0.5162 35 1 3.9134 4.9069 -2.1166 36 1 5.6357 6.3931 -3.5616 37 1 4.0400 7.1817 -3.5559 38 1 5.0433 9.2026 -2.5265 39 1 6.6388 8.4134 -2.5324 40 1 6.5367 8.2241 -5.0024 41 1 4.9414 9.0133 -4.9972 42 1 5.9453 11.0339 -3.9678 43 1 7.5404 10.2440 -3.9733 44 1 8.2053 13.6014 -5.3325 45 1 5.1450 2.6049 0.0001 46 1 6.0888 -0.7012 -0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599565411.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:54 Heat of formation + Delta-G solvation = -188.991459 kcal Electronic energy + Delta-G solvation = -26993.076862 eV Core-core repulsion = 22846.135093 eV Total energy + Delta-G solvation = -4146.941770 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.83800 -40.76371 -40.37810 -38.85058 -36.99859 -36.64842 -35.67588 -34.57552 -32.73199 -32.17768 -31.17427 -28.69410 -27.68104 -26.23010 -25.77815 -23.96642 -23.12395 -21.78049 -21.69232 -21.19159 -19.35277 -19.01319 -18.39908 -18.15172 -17.47512 -17.34794 -17.06049 -16.84535 -16.80850 -16.46709 -16.32466 -15.68904 -15.48403 -15.24191 -14.84395 -14.59509 -14.50184 -14.34229 -13.91749 -13.66939 -13.54248 -13.33484 -13.24861 -13.07748 -12.76228 -12.65953 -12.54331 -12.35823 -12.26230 -12.12185 -12.08434 -12.07785 -11.52294 -11.33531 -11.32504 -11.14900 -10.77257 -10.52259 -10.25339 -10.06015 -9.37320 -8.16517 -6.28679 -0.38759 0.15421 1.41633 1.45540 1.46750 1.53390 1.71962 2.06617 2.18848 2.26319 2.43683 2.74081 3.15955 3.52483 3.66525 3.83257 3.93022 4.01555 4.12402 4.18381 4.21213 4.32828 4.37750 4.45617 4.53384 4.65839 4.72778 4.73595 4.80822 4.83661 4.90535 4.92899 4.93210 5.11722 5.24182 5.36792 5.39033 5.40240 5.47557 5.54311 5.59158 5.60676 5.81528 5.90795 6.24817 6.27761 6.60958 6.89669 6.99424 7.33017 7.40773 8.95317 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.021183 B = 0.001549 C = 0.001530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.475332 B =18069.085054 C =18294.588960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.314 6.314 3 C 0.186 3.814 4 C -0.217 4.217 5 C -0.011 4.011 6 C -0.157 4.157 7 C 0.167 3.833 8 N -0.716 5.716 9 C 0.513 3.487 10 O -0.587 6.587 11 C -0.129 4.129 12 C -0.096 4.096 13 C -0.096 4.096 14 C 0.018 3.982 15 C -0.543 4.543 16 H 0.066 0.934 17 C -0.006 4.006 18 N -0.937 5.937 19 Si 0.969 3.031 20 H -0.265 1.265 21 H -0.285 1.285 22 H -0.265 1.265 23 C 0.001 3.999 24 C -0.192 4.192 25 C 0.527 3.473 26 O -0.537 6.537 27 O -0.510 6.510 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.112 0.888 31 H 0.167 0.833 32 H 0.159 0.841 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.416 0.584 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.044 0.956 39 H 0.042 0.958 40 H 0.059 0.941 41 H 0.061 0.939 42 H -0.015 1.015 43 H -0.016 1.016 44 H 0.262 0.738 45 H 0.151 0.849 46 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.934 -29.920 11.784 36.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.225 6.225 3 C 0.138 3.862 4 C -0.236 4.236 5 C -0.030 4.030 6 C -0.158 4.158 7 C 0.044 3.956 8 N -0.369 5.369 9 C 0.301 3.699 10 O -0.467 6.467 11 C -0.169 4.169 12 C -0.134 4.134 13 C -0.134 4.134 14 C -0.019 4.019 15 C -0.581 4.581 16 H 0.084 0.916 17 C -0.204 4.204 18 N -0.577 5.577 19 Si 0.793 3.207 20 H -0.189 1.189 21 H -0.211 1.211 22 H -0.190 1.190 23 C -0.017 4.017 24 C -0.194 4.194 25 C 0.373 3.627 26 O -0.429 6.429 27 O -0.324 6.324 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.130 0.870 31 H 0.184 0.816 32 H 0.176 0.824 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.253 0.747 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.004 0.996 43 H 0.003 0.997 44 H 0.071 0.929 45 H 0.169 0.831 46 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -16.891 -29.419 12.495 36.151 hybrid contribution 0.522 -0.091 -0.727 0.900 sum -16.369 -29.510 11.768 35.739 Atomic orbital electron populations 1.23515 0.75932 1.05828 1.03113 1.86302 1.23780 1.26181 1.86275 1.19340 0.90653 0.85890 0.90303 1.21485 1.01849 0.90581 1.09646 1.21456 0.93512 0.98400 0.89592 1.19622 0.94083 0.93813 1.08237 1.20066 1.00274 0.91648 0.83593 1.46014 1.61772 1.19952 1.09151 1.21125 0.75995 0.80718 0.92024 1.90708 1.52202 1.55804 1.47966 1.21671 1.04562 0.97896 0.92738 1.21243 0.99767 0.95806 0.96630 1.21452 1.00133 0.96556 0.95245 1.19067 0.94100 0.93357 0.95420 1.21740 1.38899 1.03710 0.93762 0.91607 1.26081 0.95319 0.96968 1.01992 1.70123 1.42042 1.12163 1.33381 0.85446 0.78821 0.77327 0.79104 1.18929 1.21090 1.19001 1.21302 1.01146 0.89189 0.90096 1.18491 0.90064 0.92071 1.18804 1.20752 0.81213 0.88824 0.71890 1.90916 1.73556 1.30906 1.47484 1.84526 1.18876 1.43476 1.85494 0.90661 0.90614 0.86952 0.81559 0.82361 0.91219 0.90471 0.74725 0.86538 0.86314 0.93756 0.93907 0.92190 0.92069 0.99637 0.99711 0.92894 0.83108 0.70690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.81 113.37 1.11 1.18 16 2 O -0.31 -5.27 8.57 -68.55 -0.59 -5.86 16 3 C 0.19 2.79 6.70 22.86 0.15 2.94 16 4 C -0.22 -1.92 9.03 22.34 0.20 -1.72 16 5 C -0.01 -0.09 9.68 22.30 0.22 0.12 16 6 C -0.16 -1.74 5.24 -19.90 -0.10 -1.85 16 7 C 0.17 2.43 5.79 85.63 0.50 2.92 16 8 N -0.72 -11.24 5.55 -466.79 -2.59 -13.83 16 9 C 0.51 12.67 7.83 87.66 0.69 13.36 16 10 O -0.59 -20.57 15.98 -3.04 -0.05 -20.62 16 11 C -0.13 -2.99 5.70 29.85 0.17 -2.82 16 12 C -0.10 -3.39 4.50 30.59 0.14 -3.25 16 13 C -0.10 -3.89 5.15 30.59 0.16 -3.73 16 14 C 0.02 0.97 4.97 29.85 0.15 1.12 16 15 C -0.54 -31.47 9.11 25.60 0.23 -31.24 16 16 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 17 C -0.01 -0.37 5.46 84.65 0.46 0.09 16 18 N -0.94 -58.87 13.29 21.44 0.28 -58.58 16 19 Si 0.97 44.71 29.54 68.60 2.03 46.73 16 20 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 21 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 22 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 23 C 0.00 0.02 9.25 22.53 0.21 0.23 16 24 C -0.19 -3.17 5.88 -20.02 -0.12 -3.28 16 25 C 0.53 9.99 8.26 70.23 0.58 10.57 16 26 O -0.54 -13.60 15.95 26.83 0.43 -13.17 16 27 O -0.51 -6.48 12.68 -56.69 -0.72 -7.20 16 28 H 0.07 0.25 7.66 -2.38 -0.02 0.23 16 29 H 0.08 0.25 7.66 -2.39 -0.02 0.24 16 30 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.17 0.55 6.30 -2.91 -0.02 0.53 16 32 H 0.16 0.65 8.06 -2.91 -0.02 0.63 16 33 H 0.07 1.17 8.08 -2.38 -0.02 1.15 16 34 H 0.08 1.17 8.08 -2.39 -0.02 1.16 16 35 H 0.42 4.16 8.46 -92.71 -0.78 3.37 16 36 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 39 H 0.04 1.66 8.10 -2.38 -0.02 1.64 16 40 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 42 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 43 H -0.02 -0.93 8.14 -2.38 -0.02 -0.95 16 44 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 45 H 0.15 1.78 7.61 -2.91 -0.02 1.76 16 46 H 0.43 1.84 9.11 -74.06 -0.67 1.16 16 Total: -1.00 -85.85 395.52 3.09 -82.76 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -0.45 Total: 5.14 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: 4.74 Total: -15.37 kcal Atomic # 7 Polarization: -70.11 SS G_CDS: -2.30 Total: -72.41 kcal Atomic # 8 Polarization: -45.93 SS G_CDS: -0.93 Total: -46.85 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -85.85 3.09 -82.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599565411.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.233 kcal (2) G-P(sol) polarization free energy of solvation -85.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds