Wall clock time and date at job start Tue Mar 31 2020 19:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 114.00130 * 2 1 4 4 C 1.52993 * 109.47144 * 180.02562 * 3 2 1 5 5 C 1.50700 * 110.35424 * 57.86306 * 4 3 2 6 6 O 1.20829 * 120.00299 * 122.13779 * 5 4 3 7 7 O 1.34234 * 119.99915 * 302.13825 * 5 4 3 8 8 C 1.54595 * 110.31299 * 295.72029 * 4 3 2 9 9 C 1.54943 * 102.92178 * 263.04369 * 8 4 3 10 10 N 1.48535 * 103.22279 * 322.58135 * 9 8 4 11 11 C 1.46904 * 110.99838 * 159.71972 * 10 9 8 12 12 C 1.50707 * 109.46884 * 52.60466 * 11 10 9 13 13 C 1.38301 * 119.92868 * 90.00228 * 12 11 10 14 14 C 1.38096 * 120.06406 * 179.97438 * 13 12 11 15 15 C 1.38881 * 119.93523 * 359.97438 * 14 13 12 16 16 O 1.35754 * 120.06804 * 179.97438 * 15 14 13 17 17 C 1.34824 * 117.00276 * 5.53620 * 16 15 14 18 18 H 1.08005 * 119.99819 * 354.94472 * 17 16 15 19 19 C 1.38651 * 120.00108 * 174.94196 * 17 16 15 20 20 N 1.31554 * 119.99870 * 359.72701 * 19 17 16 21 21 Si 1.86801 * 120.00280 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47148 * 89.99771 * 21 19 17 23 23 H 1.48492 * 109.47524 * 210.00119 * 21 19 17 24 24 H 1.48499 * 109.46954 * 330.00047 * 21 19 17 25 25 C 1.38877 * 119.86094 * 0.26449 * 15 14 13 26 26 C 1.38106 * 119.92818 * 359.48434 * 25 15 14 27 27 C 1.47901 * 105.82106 * 39.20832 * 10 9 8 28 28 H 1.09000 * 109.47050 * 299.99315 * 1 2 3 29 29 H 1.09004 * 109.47389 * 59.99401 * 1 2 3 30 30 H 1.09002 * 109.47236 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46532 * 60.00282 * 3 2 1 32 32 H 1.08994 * 109.47106 * 300.00274 * 3 2 1 33 33 H 0.96698 * 116.99749 * 179.97438 * 7 5 4 34 34 H 1.08999 * 110.72505 * 21.39564 * 8 4 3 35 35 H 1.08995 * 110.72679 * 144.50623 * 8 4 3 36 36 H 1.09001 * 110.66538 * 204.15027 * 9 8 4 37 37 H 1.08999 * 110.66906 * 81.01301 * 9 8 4 38 38 H 1.08999 * 109.47269 * 292.60354 * 11 10 9 39 39 H 1.08998 * 109.46881 * 172.60344 * 11 10 9 40 40 H 1.08000 * 119.96681 * 359.97438 * 13 12 11 41 41 H 1.08008 * 120.03430 * 180.02562 * 14 13 12 42 42 H 0.97002 * 120.00204 * 180.02562 * 20 19 17 43 43 H 1.07992 * 120.03738 * 179.72344 * 25 15 14 44 44 H 1.08001 * 119.96609 * 180.28106 * 26 25 15 45 45 H 1.09004 * 109.91860 * 94.01834 * 27 10 9 46 46 H 1.08999 * 109.91761 * 215.31000 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9981 0.3942 -1.1974 6 8 4.7711 0.8868 -1.9847 7 8 3.5514 -0.8571 -1.3888 8 6 4.0212 0.5148 1.3052 9 6 4.4102 1.7248 2.1914 10 7 5.0094 2.6773 1.2218 11 6 5.0035 4.0458 1.7561 12 6 5.6446 4.0552 3.1200 13 6 7.0069 4.2608 3.2408 14 6 7.5970 4.2706 4.4892 15 6 6.8211 4.0742 5.6242 16 8 7.3986 4.0827 6.8528 17 6 8.7075 4.4005 6.9117 18 1 9.2676 4.5536 6.0010 19 6 9.3345 4.5309 8.1415 20 7 8.6510 4.3497 9.2508 21 14 11.1479 4.9720 8.2232 22 1 11.2965 6.4488 8.2699 23 1 11.7480 4.3753 9.4434 24 1 11.8407 4.4426 7.0212 25 6 5.4542 3.8630 5.4992 26 6 4.8690 3.8596 4.2483 27 6 4.1823 2.5821 -0.0006 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8760 -1.3242 -2.1707 34 1 3.2174 -0.0586 1.7668 35 1 4.8860 -0.1206 1.1142 36 1 5.1417 1.4310 2.9441 37 1 3.5267 2.1581 2.6603 38 1 3.9760 4.4006 1.8351 39 1 5.5632 4.6994 1.0871 40 1 7.6097 4.4139 2.3578 41 1 8.6609 4.4316 4.5830 42 1 9.0896 4.4413 10.1112 43 1 4.8488 3.7055 6.3796 44 1 3.8053 3.6999 4.1507 45 1 3.4083 3.3495 0.0140 46 1 4.8100 2.7009 -0.8838 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604542269.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:24 Heat of formation + Delta-G solvation = -123.411356 kcal Electronic energy + Delta-G solvation = -28841.703278 eV Core-core repulsion = 24697.605275 eV Total energy + Delta-G solvation = -4144.098003 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.10443 -39.34602 -38.70138 -37.83349 -36.52716 -36.15010 -33.37663 -32.22809 -30.31138 -29.88819 -29.35040 -27.31514 -25.81257 -25.17320 -24.72189 -23.44516 -22.10730 -21.36125 -20.21751 -19.87500 -18.16242 -17.98822 -17.42788 -16.97228 -16.55159 -16.34880 -15.94878 -15.34261 -15.09893 -14.88062 -14.56695 -14.45492 -14.11482 -13.96728 -13.60434 -13.50075 -13.37478 -12.87545 -12.74290 -12.57638 -12.42375 -12.22482 -11.90310 -11.82123 -11.68828 -11.63026 -11.47516 -11.38623 -11.21417 -10.95676 -10.76694 -10.64701 -10.55891 -10.51315 -10.41908 -10.03470 -9.33385 -8.84438 -8.40845 -8.17686 -7.18559 -6.45852 -4.04462 1.99746 2.20407 2.27047 2.77496 3.12789 3.13999 3.18677 3.23552 3.95594 3.97102 4.21703 4.31570 4.49589 4.65503 4.81986 4.88163 4.97715 5.01108 5.05255 5.09232 5.11263 5.24069 5.28350 5.30346 5.33349 5.35413 5.46905 5.72056 5.72828 5.77748 5.84987 5.86776 5.94260 6.05849 6.20451 6.31517 6.41991 6.68276 6.70422 6.80762 6.92837 6.99025 7.08232 7.24238 7.40553 7.44331 7.73855 7.81646 7.99467 9.00038 9.69776 10.72124 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.022504 B = 0.002220 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.906220 B =12606.968841 C =13026.881843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.372 6.372 3 C 0.075 3.925 4 C -0.060 4.060 5 C 0.499 3.501 6 O -0.513 6.513 7 O -0.495 6.495 8 C -0.104 4.104 9 C 0.039 3.961 10 N -0.506 5.506 11 C 0.105 3.895 12 C -0.186 4.186 13 C -0.048 4.048 14 C -0.235 4.235 15 C 0.156 3.844 16 O -0.178 6.178 17 C -0.391 4.391 18 H 0.092 0.908 19 C 0.039 3.961 20 N -0.863 5.863 21 Si 0.941 3.059 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.194 4.194 26 C -0.067 4.067 27 C 0.045 3.955 28 H 0.042 0.958 29 H 0.039 0.961 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.404 0.596 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.049 0.951 38 H 0.035 0.965 39 H 0.077 0.923 40 H 0.108 0.892 41 H 0.126 0.874 42 H 0.270 0.730 43 H 0.115 0.885 44 H 0.106 0.894 45 H 0.055 0.945 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.686 -6.792 -19.130 25.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.290 6.290 3 C -0.002 4.002 4 C -0.062 4.062 5 C 0.341 3.659 6 O -0.402 6.402 7 O -0.304 6.304 8 C -0.142 4.142 9 C -0.089 4.089 10 N -0.231 5.231 11 C -0.022 4.022 12 C -0.188 4.188 13 C -0.067 4.067 14 C -0.255 4.255 15 C 0.102 3.898 16 O -0.081 6.081 17 C -0.467 4.467 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.498 5.498 21 Si 0.765 3.235 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.192 1.192 25 C -0.213 4.213 26 C -0.086 4.086 27 C -0.083 4.083 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.261 0.739 34 H 0.109 0.891 35 H 0.098 0.902 36 H 0.113 0.887 37 H 0.067 0.933 38 H 0.053 0.947 39 H 0.096 0.904 40 H 0.126 0.874 41 H 0.144 0.856 42 H 0.080 0.920 43 H 0.134 0.866 44 H 0.124 0.876 45 H 0.073 0.927 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -14.002 -6.769 -18.616 24.257 hybrid contribution 0.096 0.415 -0.342 0.546 sum -13.906 -6.354 -18.957 24.355 Atomic orbital electron populations 1.22761 0.80929 1.02986 0.99904 1.88016 1.19481 1.26220 1.95329 1.22504 0.90464 0.85966 1.01286 1.21379 0.95151 0.96131 0.93513 1.22879 0.77150 0.80181 0.85712 1.90706 1.33440 1.70427 1.45595 1.84661 1.68208 1.27843 1.49735 1.22564 1.01920 0.97912 0.91783 1.23302 0.98668 0.91498 0.95387 1.65034 1.47795 1.06900 1.03329 1.21001 0.98357 0.88879 0.93944 1.19037 0.94198 1.12588 0.92939 1.20584 0.93591 0.96292 0.96204 1.21169 1.00752 1.11380 0.92158 1.19403 0.92026 0.92278 0.86058 1.83973 1.25765 1.75220 1.23119 1.21334 0.82320 1.48773 0.94307 0.89025 1.25290 1.00393 0.96696 0.94141 1.70037 1.36606 1.45491 0.97636 0.85711 0.80460 0.78874 0.78408 1.19874 1.20259 1.19158 1.20151 0.92507 1.11323 0.97322 1.20472 0.97873 0.98655 0.91602 1.23009 0.96351 0.91738 0.97179 0.93967 0.94239 0.89353 0.91587 0.92714 0.73863 0.89059 0.90161 0.88668 0.93279 0.94674 0.90435 0.87378 0.85589 0.92018 0.86645 0.87601 0.92699 0.87534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.37 -3.36 8.74 -53.11 -0.46 -3.83 16 3 C 0.07 0.63 4.55 37.15 0.17 0.80 16 4 C -0.06 -0.61 0.73 -154.31 -0.11 -0.72 16 5 C 0.50 5.57 6.84 36.01 0.25 5.81 16 6 O -0.51 -7.09 16.00 -18.75 -0.30 -7.39 16 7 O -0.49 -4.45 12.13 -45.43 -0.55 -5.00 16 8 C -0.10 -1.11 6.06 -24.87 -0.15 -1.26 16 9 C 0.04 0.47 4.97 -1.89 -0.01 0.46 16 10 N -0.51 -6.54 5.39 -231.88 -1.25 -7.79 16 11 C 0.10 1.39 5.18 -4.97 -0.03 1.36 16 12 C -0.19 -3.06 4.60 -104.57 -0.48 -3.54 16 13 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 14 C -0.24 -5.07 9.17 -39.40 -0.36 -5.44 16 15 C 0.16 3.73 6.65 -39.11 -0.26 3.47 16 16 O -0.18 -5.04 9.76 0.05 0.00 -5.04 16 17 C -0.39 -10.89 9.49 30.88 0.29 -10.60 16 18 H 0.09 2.37 5.20 -52.48 -0.27 2.10 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 20 N -0.86 -25.23 13.67 55.48 0.76 -24.47 16 21 Si 0.94 20.52 29.55 -169.99 -5.02 15.50 16 22 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 23 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 24 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 25 C -0.19 -3.97 9.99 -39.39 -0.39 -4.37 16 26 C -0.07 -1.14 8.33 -39.61 -0.33 -1.47 16 27 C 0.05 0.49 5.97 -2.76 -0.02 0.48 16 28 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.40 1.92 9.10 45.56 0.41 2.33 16 34 H 0.09 0.90 7.46 -51.93 -0.39 0.51 16 35 H 0.08 0.92 7.85 -51.93 -0.41 0.51 16 36 H 0.10 1.35 7.74 -51.93 -0.40 0.95 16 37 H 0.05 0.55 7.09 -51.93 -0.37 0.18 16 38 H 0.04 0.42 7.75 -51.93 -0.40 0.01 16 39 H 0.08 0.99 8.08 -51.93 -0.42 0.57 16 40 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 41 H 0.13 2.75 5.64 -52.48 -0.30 2.45 16 42 H 0.27 7.23 8.31 -40.82 -0.34 6.90 16 43 H 0.12 2.30 8.06 -52.49 -0.42 1.87 16 44 H 0.11 1.49 7.38 -52.49 -0.39 1.10 16 45 H 0.05 0.51 7.11 -51.93 -0.37 0.14 16 46 H 0.11 1.32 6.42 -51.93 -0.33 0.98 16 LS Contribution 377.25 15.07 5.69 5.69 Total: -1.00 -33.17 377.25 -7.67 -40.84 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -5.73 Total: 5.48 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -0.80 Total: -13.99 kcal Atomic # 7 Polarization: -31.76 SS G_CDS: -0.49 Total: -32.26 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -1.32 Total: -21.25 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.17 -7.67 -40.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604542269.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.571 kcal (2) G-P(sol) polarization free energy of solvation -33.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds