Wall clock time and date at job start Tue Mar 31 2020 19:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 114.00130 * 2 1 4 4 C 1.52993 * 109.47144 * 180.02562 * 3 2 1 5 5 C 1.50700 * 110.35424 * 57.86306 * 4 3 2 6 6 O 1.20829 * 120.00299 * 122.13779 * 5 4 3 7 7 O 1.34234 * 119.99915 * 302.13825 * 5 4 3 8 8 C 1.54595 * 110.31299 * 295.72029 * 4 3 2 9 9 C 1.54943 * 102.92178 * 263.04369 * 8 4 3 10 10 N 1.48535 * 103.22279 * 322.58135 * 9 8 4 11 11 C 1.46904 * 110.99838 * 159.71972 * 10 9 8 12 12 C 1.50707 * 109.46884 * 52.60466 * 11 10 9 13 13 C 1.38301 * 119.92868 * 90.00228 * 12 11 10 14 14 C 1.38096 * 120.06406 * 179.97438 * 13 12 11 15 15 C 1.38881 * 119.93523 * 359.97438 * 14 13 12 16 16 O 1.35754 * 120.06804 * 179.97438 * 15 14 13 17 17 C 1.34824 * 117.00276 * 5.53620 * 16 15 14 18 18 H 1.08005 * 119.99819 * 354.94472 * 17 16 15 19 19 C 1.38651 * 120.00108 * 174.94196 * 17 16 15 20 20 N 1.31554 * 119.99870 * 359.72701 * 19 17 16 21 21 Si 1.86801 * 120.00280 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47148 * 89.99771 * 21 19 17 23 23 H 1.48492 * 109.47524 * 210.00119 * 21 19 17 24 24 H 1.48499 * 109.46954 * 330.00047 * 21 19 17 25 25 C 1.38877 * 119.86094 * 0.26449 * 15 14 13 26 26 C 1.38106 * 119.92818 * 359.48434 * 25 15 14 27 27 C 1.47901 * 105.82106 * 39.20832 * 10 9 8 28 28 H 1.09000 * 109.47050 * 299.99315 * 1 2 3 29 29 H 1.09004 * 109.47389 * 59.99401 * 1 2 3 30 30 H 1.09002 * 109.47236 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46532 * 60.00282 * 3 2 1 32 32 H 1.08994 * 109.47106 * 300.00274 * 3 2 1 33 33 H 0.96698 * 116.99749 * 179.97438 * 7 5 4 34 34 H 1.08999 * 110.72505 * 21.39564 * 8 4 3 35 35 H 1.08995 * 110.72679 * 144.50623 * 8 4 3 36 36 H 1.09001 * 110.66538 * 204.15027 * 9 8 4 37 37 H 1.08999 * 110.66906 * 81.01301 * 9 8 4 38 38 H 1.08999 * 109.47269 * 292.60354 * 11 10 9 39 39 H 1.08998 * 109.46881 * 172.60344 * 11 10 9 40 40 H 1.08000 * 119.96681 * 359.97438 * 13 12 11 41 41 H 1.08008 * 120.03430 * 180.02562 * 14 13 12 42 42 H 0.97002 * 120.00204 * 180.02562 * 20 19 17 43 43 H 1.07992 * 120.03738 * 179.72344 * 25 15 14 44 44 H 1.08001 * 119.96609 * 180.28106 * 26 25 15 45 45 H 1.09004 * 109.91860 * 94.01834 * 27 10 9 46 46 H 1.08999 * 109.91761 * 215.31000 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9981 0.3942 -1.1974 6 8 4.7711 0.8868 -1.9847 7 8 3.5514 -0.8571 -1.3888 8 6 4.0212 0.5148 1.3052 9 6 4.4102 1.7248 2.1914 10 7 5.0094 2.6773 1.2218 11 6 5.0035 4.0458 1.7561 12 6 5.6446 4.0552 3.1200 13 6 7.0069 4.2608 3.2408 14 6 7.5970 4.2706 4.4892 15 6 6.8211 4.0742 5.6242 16 8 7.3986 4.0827 6.8528 17 6 8.7075 4.4005 6.9117 18 1 9.2676 4.5536 6.0010 19 6 9.3345 4.5309 8.1415 20 7 8.6510 4.3497 9.2508 21 14 11.1479 4.9720 8.2232 22 1 11.2965 6.4488 8.2699 23 1 11.7480 4.3753 9.4434 24 1 11.8407 4.4426 7.0212 25 6 5.4542 3.8630 5.4992 26 6 4.8690 3.8596 4.2483 27 6 4.1823 2.5821 -0.0006 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8760 -1.3242 -2.1707 34 1 3.2174 -0.0586 1.7668 35 1 4.8860 -0.1206 1.1142 36 1 5.1417 1.4310 2.9441 37 1 3.5267 2.1581 2.6603 38 1 3.9760 4.4006 1.8351 39 1 5.5632 4.6994 1.0871 40 1 7.6097 4.4139 2.3578 41 1 8.6609 4.4316 4.5830 42 1 9.0896 4.4413 10.1112 43 1 4.8488 3.7055 6.3796 44 1 3.8053 3.6999 4.1507 45 1 3.4083 3.3495 0.0140 46 1 4.8100 2.7009 -0.8838 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604542269.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:24 Heat of formation + Delta-G solvation = -147.131153 kcal Electronic energy + Delta-G solvation = -28842.731846 eV Core-core repulsion = 24697.605275 eV Total energy + Delta-G solvation = -4145.126571 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.94811 -40.83144 -39.80021 -38.70043 -37.91241 -37.02342 -34.60228 -34.01072 -31.82311 -31.04459 -30.48473 -28.00540 -27.49044 -26.14686 -25.73329 -24.39152 -23.64672 -22.65068 -21.47370 -20.71157 -19.83441 -18.95820 -18.80831 -18.21107 -17.20878 -17.14265 -16.68020 -16.47232 -16.33639 -16.20086 -16.09810 -15.48186 -15.40726 -15.24443 -15.03555 -14.84024 -14.46978 -14.29029 -13.87406 -13.61426 -13.47882 -13.29467 -13.27355 -12.93277 -12.71446 -12.57659 -12.52929 -12.47409 -12.34870 -12.15550 -12.13701 -12.11031 -11.89551 -11.73686 -11.41016 -11.15441 -10.78581 -10.58608 -9.74258 -9.38406 -8.86490 -8.46770 -6.14425 0.62745 0.69016 1.16343 1.35130 1.44000 1.52223 2.05659 2.18074 2.60126 2.79937 3.05831 3.25095 3.47412 3.53251 3.54146 3.81795 3.97230 4.08400 4.17399 4.20792 4.25671 4.31204 4.35876 4.43350 4.52700 4.58799 4.60752 4.64763 4.65397 4.73857 4.84371 4.90400 4.94453 4.99821 5.02304 5.06286 5.11846 5.17627 5.32290 5.56964 5.60809 5.73798 5.81602 5.93236 6.03888 6.06379 6.19875 6.25416 6.98384 7.02437 7.79497 8.76427 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.022504 B = 0.002220 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.906220 B =12606.968841 C =13026.881843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.393 6.393 3 C 0.077 3.923 4 C -0.058 4.058 5 C 0.501 3.499 6 O -0.546 6.546 7 O -0.493 6.493 8 C -0.097 4.097 9 C 0.039 3.961 10 N -0.525 5.525 11 C 0.107 3.893 12 C -0.157 4.157 13 C -0.052 4.052 14 C -0.245 4.245 15 C 0.115 3.885 16 O -0.232 6.232 17 C -0.412 4.412 18 H 0.099 0.901 19 C -0.023 4.023 20 N -0.920 5.920 21 Si 1.017 2.983 22 H -0.263 1.263 23 H -0.271 1.271 24 H -0.255 1.255 25 C -0.202 4.202 26 C -0.054 4.054 27 C 0.050 3.950 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.421 0.579 34 H 0.101 0.899 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.088 0.912 40 H 0.132 0.868 41 H 0.114 0.886 42 H 0.272 0.728 43 H 0.114 0.886 44 H 0.148 0.852 45 H 0.081 0.919 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.485 -6.626 -21.958 28.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.312 6.312 3 C 0.000 4.000 4 C -0.060 4.060 5 C 0.344 3.656 6 O -0.437 6.437 7 O -0.304 6.304 8 C -0.135 4.135 9 C -0.088 4.088 10 N -0.249 5.249 11 C -0.020 4.020 12 C -0.158 4.158 13 C -0.070 4.070 14 C -0.264 4.264 15 C 0.064 3.936 16 O -0.139 6.139 17 C -0.488 4.488 18 H 0.117 0.883 19 C -0.220 4.220 20 N -0.559 5.559 21 Si 0.836 3.164 22 H -0.188 1.188 23 H -0.195 1.195 24 H -0.179 1.179 25 C -0.222 4.222 26 C -0.072 4.072 27 C -0.078 4.078 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.113 0.887 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.282 0.718 34 H 0.119 0.881 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.106 0.894 40 H 0.150 0.850 41 H 0.132 0.868 42 H 0.081 0.919 43 H 0.132 0.868 44 H 0.166 0.834 45 H 0.099 0.901 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.844 -6.629 -21.512 27.527 hybrid contribution 0.384 0.250 0.196 0.499 sum -15.460 -6.379 -21.316 27.094 Atomic orbital electron populations 1.22910 0.79514 1.03792 1.00778 1.87979 1.21040 1.26639 1.95523 1.22517 0.88809 0.86095 1.02545 1.21378 0.96668 0.95443 0.92539 1.23097 0.76406 0.80531 0.85572 1.90699 1.34921 1.71198 1.46889 1.84624 1.67874 1.27118 1.50799 1.22465 1.01698 0.97316 0.92007 1.23256 0.98464 0.92082 0.95021 1.64928 1.49273 1.06556 1.04163 1.21044 0.99741 0.89625 0.91603 1.19528 0.93407 1.07975 0.94909 1.20893 0.94917 0.95706 0.95512 1.21233 1.00296 1.11866 0.93042 1.19962 0.93637 0.94325 0.85655 1.83935 1.26147 1.78313 1.25513 1.21787 0.82885 1.49098 0.95053 0.88321 1.26554 1.05616 0.96428 0.93411 1.70177 1.38983 1.48362 0.98343 0.84608 0.73933 0.78951 0.78875 1.18787 1.19522 1.17851 1.20428 0.91374 1.11242 0.99121 1.20874 0.99894 0.96489 0.89969 1.22931 0.96533 0.92968 0.95366 0.93064 0.93346 0.88718 0.90104 0.91593 0.71836 0.88071 0.91583 0.91224 0.91573 0.91842 0.89365 0.84994 0.86808 0.91853 0.86831 0.83434 0.90091 0.89034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.39 -5.85 8.74 -131.89 -1.15 -7.01 16 3 C 0.08 1.00 4.55 71.98 0.33 1.33 16 4 C -0.06 -1.02 0.73 -52.05 -0.04 -1.05 16 5 C 0.50 10.19 6.84 71.24 0.49 10.67 16 6 O -0.55 -14.35 16.00 21.95 0.35 -14.00 16 7 O -0.49 -7.85 12.13 -45.56 -0.55 -8.40 16 8 C -0.10 -1.83 6.06 31.80 0.19 -1.64 16 9 C 0.04 0.83 4.97 86.65 0.43 1.26 16 10 N -0.52 -11.73 5.39 -887.53 -4.78 -16.52 16 11 C 0.11 2.33 5.18 85.56 0.44 2.77 16 12 C -0.16 -4.68 4.60 -19.83 -0.09 -4.77 16 13 C -0.05 -1.81 9.69 22.25 0.22 -1.59 16 14 C -0.25 -10.80 9.17 22.39 0.21 -10.59 16 15 C 0.11 5.69 6.65 22.58 0.15 5.84 16 16 O -0.23 -14.05 9.76 -22.72 -0.22 -14.27 16 17 C -0.41 -24.24 9.49 67.92 0.64 -23.60 16 18 H 0.10 5.38 5.20 -2.91 -0.02 5.36 16 19 C -0.02 -1.30 5.49 84.83 0.47 -0.83 16 20 N -0.92 -56.77 13.67 21.61 0.30 -56.47 16 21 Si 1.02 43.37 29.55 68.60 2.03 45.40 16 22 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 23 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 24 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 25 C -0.20 -8.34 9.99 22.39 0.22 -8.11 16 26 C -0.05 -1.67 8.33 22.25 0.19 -1.49 16 27 C 0.05 0.91 5.97 86.45 0.52 1.43 16 28 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.05 0.35 8.14 -2.38 -0.02 0.33 16 30 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.42 3.22 9.10 -74.06 -0.67 2.55 16 34 H 0.10 1.72 7.46 -2.39 -0.02 1.70 16 35 H 0.07 1.43 7.85 -2.39 -0.02 1.41 16 36 H 0.07 1.85 7.74 -2.39 -0.02 1.83 16 37 H 0.07 1.18 7.09 -2.39 -0.02 1.16 16 38 H 0.06 1.10 7.75 -2.39 -0.02 1.08 16 39 H 0.09 1.82 8.08 -2.39 -0.02 1.80 16 40 H 0.13 3.97 8.06 -2.91 -0.02 3.95 16 41 H 0.11 5.19 5.64 -2.91 -0.02 5.17 16 42 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 43 H 0.11 4.63 8.06 -2.91 -0.02 4.60 16 44 H 0.15 3.40 7.38 -2.91 -0.02 3.38 16 45 H 0.08 1.08 7.11 -2.39 -0.02 1.06 16 46 H 0.09 2.03 6.42 -2.39 -0.02 2.02 16 Total: -1.00 -77.27 377.25 1.91 -75.36 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: 0.34 Total: 24.81 kcal Atomic # 6 Polarization: -34.50 SS G_CDS: 5.61 Total: -28.89 kcal Atomic # 7 Polarization: -68.50 SS G_CDS: -4.49 Total: -72.99 kcal Atomic # 8 Polarization: -42.11 SS G_CDS: -1.58 Total: -43.68 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -77.27 1.91 -75.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604542269.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.770 kcal (2) G-P(sol) polarization free energy of solvation -77.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds