Wall clock time and date at job start Tue Mar 31 2020 19:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00148 * 2 1 4 4 C 1.52999 * 109.47565 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47029 * 64.99398 * 4 3 2 6 6 C 1.46500 * 120.00283 * 270.00555 * 5 4 3 7 7 C 1.50705 * 109.46814 * 270.00045 * 6 5 4 8 8 O 1.20827 * 120.00020 * 359.97438 * 7 6 5 9 9 O 1.34230 * 120.00113 * 179.97438 * 7 6 5 10 10 C 1.34773 * 119.99707 * 90.00125 * 5 4 3 11 11 O 1.21284 * 120.00085 * 0.02562 * 10 5 4 12 12 C 1.50706 * 119.99984 * 179.97438 * 10 5 4 13 13 C 1.52994 * 109.46995 * 180.02562 * 12 10 5 14 14 H 1.08997 * 109.47639 * 54.05331 * 13 12 10 15 15 C 1.50698 * 109.46998 * 294.05407 * 13 12 10 16 16 H 1.08002 * 120.00397 * 330.08382 * 15 13 12 17 17 C 1.37877 * 119.99983 * 150.08385 * 15 13 12 18 18 N 1.31513 * 120.00147 * 6.55933 * 17 15 13 19 19 Si 1.86806 * 120.00054 * 186.55449 * 17 15 13 20 20 H 1.48505 * 109.47142 * 180.02562 * 19 17 15 21 21 H 1.48498 * 109.47340 * 300.00345 * 19 17 15 22 22 H 1.48505 * 109.46728 * 60.00313 * 19 17 15 23 23 C 1.50704 * 109.47072 * 174.05777 * 13 12 10 24 24 C 1.38232 * 120.00156 * 64.29986 * 23 13 12 25 25 C 1.38227 * 120.00423 * 179.81276 * 24 23 13 26 26 C 1.38238 * 119.99674 * 0.39266 * 25 24 23 27 27 C 1.38237 * 119.99909 * 359.86442 * 26 25 24 28 28 C 1.38229 * 119.99861 * 359.94762 * 27 26 25 29 29 H 1.09001 * 109.46923 * 60.00790 * 1 2 3 30 30 H 1.09002 * 109.47165 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47250 * 300.00130 * 1 2 3 32 32 H 1.08999 * 109.47566 * 59.99379 * 3 2 1 33 33 H 1.09004 * 109.46861 * 299.99833 * 3 2 1 34 34 H 1.09004 * 109.46872 * 305.00163 * 4 3 2 35 35 H 1.08996 * 109.47823 * 184.99699 * 4 3 2 36 36 H 1.08999 * 109.46940 * 29.99325 * 6 5 4 37 37 H 1.08993 * 109.47434 * 150.00271 * 6 5 4 38 38 H 0.96693 * 117.00289 * 179.97438 * 9 7 6 39 39 H 1.08997 * 109.46866 * 60.00030 * 12 10 5 40 40 H 1.09004 * 109.46662 * 299.99914 * 12 10 5 41 41 H 0.96997 * 120.00185 * 354.72930 * 18 17 15 42 42 H 1.08007 * 119.99790 * 359.97438 * 24 23 13 43 43 H 1.08004 * 120.00499 * 180.23296 * 25 24 23 44 44 H 1.08006 * 119.99774 * 179.83158 * 26 25 24 45 45 H 1.07995 * 119.99599 * 179.97438 * 27 26 25 46 46 H 1.08000 * 119.99707 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1063 -0.8926 -1.3402 7 6 5.5018 -1.2982 -0.9410 8 8 6.3057 -0.4568 -0.6158 9 8 5.8516 -2.5941 -0.9468 10 6 4.2633 1.3328 -2.3200 11 8 4.1564 2.5386 -2.2459 12 6 4.7178 0.6942 -3.6072 13 6 4.9753 1.7813 -4.6526 14 1 5.6703 2.5171 -4.2481 15 6 3.6755 2.4582 -5.0040 16 1 2.7480 1.9076 -4.9498 17 6 3.6705 3.7804 -5.3946 18 7 4.8070 4.4141 -5.5854 19 14 2.0493 4.6718 -5.6531 20 1 2.3153 6.0726 -6.0684 21 1 1.2683 3.9821 -6.7112 22 1 1.2755 4.6693 -4.3856 23 6 5.5676 1.1579 -5.8902 24 6 4.8278 0.2557 -6.6315 25 6 5.3696 -0.3132 -7.7688 26 6 6.6543 0.0139 -8.1604 27 6 7.3961 0.9121 -7.4161 28 6 6.8528 1.4839 -6.2810 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6886 1.8465 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 3.8508 0.5685 0.8427 35 1 3.9785 2.1765 0.0902 36 1 3.3858 -1.3632 -0.6712 37 1 3.9140 -1.2124 -2.3643 38 1 6.7577 -2.8054 -0.6834 39 1 3.9445 0.0170 -3.9696 40 1 5.6368 0.1353 -3.4308 41 1 5.6472 3.9761 -5.3781 42 1 3.8253 -0.0028 -6.3234 43 1 4.7901 -1.0153 -8.3501 44 1 7.0787 -0.4327 -9.0475 45 1 8.4000 1.1673 -7.7218 46 1 7.4322 2.1859 -5.6998 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604586614.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:57 Heat of formation + Delta-G solvation = -144.156147 kcal Electronic energy + Delta-G solvation = -30068.760656 eV Core-core repulsion = 25923.763091 eV Total energy + Delta-G solvation = -4144.997565 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.49700 -39.27560 -38.43159 -37.68848 -36.19641 -35.09171 -34.24626 -31.54265 -30.70476 -30.10604 -28.81597 -27.81449 -26.30313 -25.04885 -23.26846 -22.35027 -22.04582 -21.62282 -19.98629 -18.62736 -18.19781 -17.11563 -16.85075 -16.55208 -16.36564 -16.16747 -15.84808 -15.52837 -15.19518 -14.94314 -14.49021 -14.12112 -13.99314 -13.66847 -13.20667 -13.17674 -12.75379 -12.59651 -12.50178 -12.36906 -12.22381 -12.04176 -11.93230 -11.78143 -11.53707 -11.46086 -11.13759 -10.95612 -10.72148 -10.69486 -10.42808 -10.14493 -10.05547 -9.74719 -9.65206 -9.07775 -8.64928 -8.53202 -8.27111 -8.13620 -7.63631 -6.23707 -3.91693 2.18602 2.19470 2.24850 2.70845 3.26385 3.47837 3.50474 3.53215 3.69137 3.81544 4.59963 4.66452 4.89580 4.99479 5.08504 5.16745 5.22849 5.29217 5.36471 5.40827 5.46385 5.54547 5.57689 5.60039 5.63221 5.75923 5.83159 5.91713 5.95913 6.04180 6.15434 6.31389 6.41022 6.44379 6.59788 6.71273 6.79709 6.92843 7.07195 7.20146 7.22653 7.37568 7.67745 7.71757 7.86171 7.88562 8.21359 8.49665 8.84998 8.97014 9.77976 11.16480 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.008812 B = 0.004981 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3176.809564 B = 5619.939938 C = 7627.567389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.393 6.393 3 C 0.043 3.957 4 C 0.125 3.875 5 N -0.608 5.608 6 C 0.128 3.872 7 C 0.452 3.548 8 O -0.503 6.503 9 O -0.520 6.520 10 C 0.523 3.477 11 O -0.487 6.487 12 C -0.117 4.117 13 C 0.073 3.927 14 H 0.051 0.949 15 C -0.569 4.569 16 H 0.045 0.955 17 C 0.033 3.967 18 N -0.904 5.904 19 Si 1.063 2.937 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.289 1.289 23 C -0.031 4.031 24 C -0.108 4.108 25 C -0.129 4.129 26 C -0.153 4.153 27 C -0.124 4.124 28 C -0.129 4.129 29 H 0.042 0.958 30 H 0.083 0.917 31 H 0.037 0.963 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.101 0.899 36 H 0.127 0.873 37 H 0.121 0.879 38 H 0.407 0.593 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.270 0.730 42 H 0.115 0.885 43 H 0.108 0.892 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.909 -14.328 9.122 17.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.312 6.312 3 C -0.035 4.035 4 C 0.002 3.998 5 N -0.345 5.345 6 C 0.001 3.999 7 C 0.292 3.708 8 O -0.390 6.390 9 O -0.331 6.331 10 C 0.312 3.688 11 O -0.357 6.357 12 C -0.157 4.157 13 C 0.054 3.946 14 H 0.069 0.931 15 C -0.606 4.606 16 H 0.064 0.936 17 C -0.173 4.173 18 N -0.540 5.540 19 Si 0.892 3.108 20 H -0.209 1.209 21 H -0.218 1.218 22 H -0.216 1.216 23 C -0.031 4.031 24 C -0.126 4.126 25 C -0.147 4.147 26 C -0.171 4.171 27 C -0.142 4.142 28 C -0.148 4.148 29 H 0.061 0.939 30 H 0.101 0.899 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.119 0.881 36 H 0.144 0.856 37 H 0.139 0.861 38 H 0.266 0.734 39 H 0.099 0.901 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.133 0.867 43 H 0.126 0.874 44 H 0.124 0.876 45 H 0.125 0.875 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.683 -11.976 8.619 15.208 hybrid contribution 1.045 -1.431 0.627 1.880 sum -2.638 -13.407 9.246 16.498 Atomic orbital electron populations 1.22702 0.81234 1.02405 1.00018 1.87788 1.19606 1.28287 1.95496 1.23089 0.94474 0.84715 1.01177 1.21399 0.91632 1.00630 0.86160 1.47777 1.69055 1.04615 1.13004 1.20926 0.89920 0.83215 1.05811 1.24625 0.92204 0.79861 0.74119 1.90754 1.52622 1.51959 1.43634 1.84536 1.38160 1.28777 1.81642 1.20906 0.76079 0.87442 0.84349 1.90747 1.48869 1.13811 1.82295 1.21746 1.00038 1.00391 0.93543 1.17865 0.98204 0.91632 0.86938 0.93069 1.21511 0.90949 0.97772 1.50405 0.93631 1.25574 1.03479 0.94851 0.93410 1.70750 0.98358 1.41852 1.42993 0.83647 0.74697 0.76390 0.76089 1.20930 1.21750 1.21591 1.20804 0.91599 0.91994 0.98733 1.20906 0.99307 0.97425 0.95011 1.21005 0.95573 1.00754 0.97386 1.20826 0.95420 1.00632 1.00224 1.20964 0.99251 0.98010 0.95996 1.21072 0.95801 1.00439 0.97461 0.93928 0.89859 0.94391 0.92603 0.91960 0.90532 0.88078 0.85551 0.86150 0.73441 0.90122 0.91984 0.91823 0.86741 0.87426 0.87576 0.87464 0.87200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.43 16 2 O -0.39 -4.73 9.53 -35.23 -0.34 -5.07 16 3 C 0.04 0.55 6.28 37.16 0.23 0.79 16 4 C 0.12 1.74 5.81 -4.04 -0.02 1.72 16 5 N -0.61 -9.58 1.92 -175.05 -0.34 -9.91 16 6 C 0.13 1.55 5.62 -5.19 -0.03 1.52 16 7 C 0.45 5.76 8.29 36.01 0.30 6.06 16 8 O -0.50 -8.36 17.19 -18.75 -0.32 -8.68 16 9 O -0.52 -4.94 13.42 -39.26 -0.53 -5.47 16 10 C 0.52 10.65 7.43 -10.98 -0.08 10.57 16 11 O -0.49 -12.11 14.60 5.55 0.08 -12.02 16 12 C -0.12 -2.33 3.49 -27.88 -0.10 -2.42 16 13 C 0.07 1.76 1.31 -92.93 -0.12 1.64 16 14 H 0.05 1.41 6.23 -51.93 -0.32 1.09 16 15 C -0.57 -15.35 6.40 -34.44 -0.22 -15.57 16 16 H 0.05 1.22 7.82 -52.49 -0.41 0.81 16 17 C 0.03 0.94 5.45 -17.82 -0.10 0.84 16 18 N -0.90 -27.64 13.63 55.43 0.76 -26.89 16 19 Si 1.06 26.08 29.91 -169.99 -5.08 21.00 16 20 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 23 C -0.03 -0.68 4.77 -104.62 -0.50 -1.18 16 24 C -0.11 -2.21 8.88 -39.59 -0.35 -2.56 16 25 C -0.13 -2.32 10.05 -39.59 -0.40 -2.72 16 26 C -0.15 -2.67 10.05 -39.58 -0.40 -3.07 16 27 C -0.12 -2.31 10.05 -39.59 -0.40 -2.71 16 28 C -0.13 -2.76 9.67 -39.59 -0.38 -3.15 16 29 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.08 0.92 8.07 -51.93 -0.42 0.50 16 35 H 0.10 1.57 7.42 -51.93 -0.39 1.18 16 36 H 0.13 1.27 7.11 -51.93 -0.37 0.90 16 37 H 0.12 1.34 6.44 -51.93 -0.33 1.01 16 38 H 0.41 2.32 9.10 45.56 0.41 2.73 16 39 H 0.08 1.45 7.13 -51.93 -0.37 1.08 16 40 H 0.06 1.15 8.00 -51.93 -0.42 0.73 16 41 H 0.27 8.22 6.68 -40.82 -0.27 7.95 16 42 H 0.11 2.25 7.80 -52.48 -0.41 1.84 16 43 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 44 H 0.11 1.54 8.06 -52.48 -0.42 1.11 16 45 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 46 H 0.11 2.34 7.95 -52.49 -0.42 1.92 16 LS Contribution 390.72 15.07 5.89 5.89 Total: -1.00 -36.08 390.72 -7.23 -43.31 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -5.89 Total: 6.66 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -1.45 Total: -8.81 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.42 Total: -36.80 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -1.10 Total: -31.24 kcal Atomic # 14 Polarization: 26.08 SS G_CDS: -5.08 Total: 21.00 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.08 -7.23 -43.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604586614.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.846 kcal (2) G-P(sol) polarization free energy of solvation -36.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds