Wall clock time and date at job start Tue Mar 31 2020 19:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00148 * 2 1 4 4 C 1.52999 * 109.47565 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47029 * 64.99398 * 4 3 2 6 6 C 1.46500 * 120.00283 * 270.00555 * 5 4 3 7 7 C 1.50705 * 109.46814 * 270.00045 * 6 5 4 8 8 O 1.20827 * 120.00020 * 359.97438 * 7 6 5 9 9 O 1.34230 * 120.00113 * 179.97438 * 7 6 5 10 10 C 1.34773 * 119.99707 * 90.00125 * 5 4 3 11 11 O 1.21284 * 120.00085 * 0.02562 * 10 5 4 12 12 C 1.50706 * 119.99984 * 179.97438 * 10 5 4 13 13 C 1.52994 * 109.46995 * 180.02562 * 12 10 5 14 14 H 1.08997 * 109.47639 * 54.05331 * 13 12 10 15 15 C 1.50698 * 109.46998 * 294.05407 * 13 12 10 16 16 H 1.08002 * 120.00397 * 330.08382 * 15 13 12 17 17 C 1.37877 * 119.99983 * 150.08385 * 15 13 12 18 18 N 1.31513 * 120.00147 * 6.55933 * 17 15 13 19 19 Si 1.86806 * 120.00054 * 186.55449 * 17 15 13 20 20 H 1.48505 * 109.47142 * 180.02562 * 19 17 15 21 21 H 1.48498 * 109.47340 * 300.00345 * 19 17 15 22 22 H 1.48505 * 109.46728 * 60.00313 * 19 17 15 23 23 C 1.50704 * 109.47072 * 174.05777 * 13 12 10 24 24 C 1.38232 * 120.00156 * 64.29986 * 23 13 12 25 25 C 1.38227 * 120.00423 * 179.81276 * 24 23 13 26 26 C 1.38238 * 119.99674 * 0.39266 * 25 24 23 27 27 C 1.38237 * 119.99909 * 359.86442 * 26 25 24 28 28 C 1.38229 * 119.99861 * 359.94762 * 27 26 25 29 29 H 1.09001 * 109.46923 * 60.00790 * 1 2 3 30 30 H 1.09002 * 109.47165 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47250 * 300.00130 * 1 2 3 32 32 H 1.08999 * 109.47566 * 59.99379 * 3 2 1 33 33 H 1.09004 * 109.46861 * 299.99833 * 3 2 1 34 34 H 1.09004 * 109.46872 * 305.00163 * 4 3 2 35 35 H 1.08996 * 109.47823 * 184.99699 * 4 3 2 36 36 H 1.08999 * 109.46940 * 29.99325 * 6 5 4 37 37 H 1.08993 * 109.47434 * 150.00271 * 6 5 4 38 38 H 0.96693 * 117.00289 * 179.97438 * 9 7 6 39 39 H 1.08997 * 109.46866 * 60.00030 * 12 10 5 40 40 H 1.09004 * 109.46662 * 299.99914 * 12 10 5 41 41 H 0.96997 * 120.00185 * 354.72930 * 18 17 15 42 42 H 1.08007 * 119.99790 * 359.97438 * 24 23 13 43 43 H 1.08004 * 120.00499 * 180.23296 * 25 24 23 44 44 H 1.08006 * 119.99774 * 179.83158 * 26 25 24 45 45 H 1.07995 * 119.99599 * 179.97438 * 27 26 25 46 46 H 1.08000 * 119.99707 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1063 -0.8926 -1.3402 7 6 5.5018 -1.2982 -0.9410 8 8 6.3057 -0.4568 -0.6158 9 8 5.8516 -2.5941 -0.9468 10 6 4.2633 1.3328 -2.3200 11 8 4.1564 2.5386 -2.2459 12 6 4.7178 0.6942 -3.6072 13 6 4.9753 1.7813 -4.6526 14 1 5.6703 2.5171 -4.2481 15 6 3.6755 2.4582 -5.0040 16 1 2.7480 1.9076 -4.9498 17 6 3.6705 3.7804 -5.3946 18 7 4.8070 4.4141 -5.5854 19 14 2.0493 4.6718 -5.6531 20 1 2.3153 6.0726 -6.0684 21 1 1.2683 3.9821 -6.7112 22 1 1.2755 4.6693 -4.3856 23 6 5.5676 1.1579 -5.8902 24 6 4.8278 0.2557 -6.6315 25 6 5.3696 -0.3132 -7.7688 26 6 6.6543 0.0139 -8.1604 27 6 7.3961 0.9121 -7.4161 28 6 6.8528 1.4839 -6.2810 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6886 1.8465 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 3.8508 0.5685 0.8427 35 1 3.9785 2.1765 0.0902 36 1 3.3858 -1.3632 -0.6712 37 1 3.9140 -1.2124 -2.3643 38 1 6.7577 -2.8054 -0.6834 39 1 3.9445 0.0170 -3.9696 40 1 5.6368 0.1353 -3.4308 41 1 5.6472 3.9761 -5.3781 42 1 3.8253 -0.0028 -6.3234 43 1 4.7901 -1.0153 -8.3501 44 1 7.0787 -0.4327 -9.0475 45 1 8.4000 1.1673 -7.7218 46 1 7.4322 2.1859 -5.6998 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604586614.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:56 Heat of formation + Delta-G solvation = -168.142651 kcal Electronic energy + Delta-G solvation = -30069.800789 eV Core-core repulsion = 25923.763091 eV Total energy + Delta-G solvation = -4146.037698 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.68376 -40.63791 -39.90657 -38.75469 -37.21764 -36.46362 -36.01920 -33.39994 -31.95440 -31.61578 -30.29618 -28.96575 -27.39453 -26.69979 -24.95578 -23.63140 -23.22599 -23.06912 -21.63541 -20.05227 -19.19730 -18.78188 -18.35239 -17.72555 -17.57009 -17.37683 -17.03535 -16.70832 -16.38398 -16.22377 -15.80014 -15.64546 -15.63772 -15.42337 -14.71304 -14.54853 -14.08401 -14.02199 -13.98049 -13.60873 -13.54350 -13.34423 -13.22563 -13.08188 -12.84173 -12.70680 -12.60493 -12.51160 -12.11955 -12.06495 -11.95510 -11.81477 -11.73313 -11.49355 -10.83895 -10.66534 -10.58913 -10.33442 -9.85509 -9.65342 -9.28571 -8.45669 -6.11828 0.66616 0.72620 1.17315 1.47295 1.54912 1.58545 1.73544 1.84833 2.35548 2.61069 2.84943 3.09331 3.36612 3.63917 3.96779 4.05069 4.09056 4.14817 4.23188 4.26584 4.31134 4.34058 4.38086 4.43233 4.47102 4.55064 4.57819 4.60210 4.65684 4.78930 4.81754 4.84519 4.89834 5.03542 5.20320 5.37516 5.40547 5.48652 5.60617 5.73477 5.80808 5.92897 6.13631 6.21744 6.27591 6.31706 6.39007 6.75726 6.98422 7.31689 7.64986 8.94201 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.008812 B = 0.004981 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3176.809564 B = 5619.939938 C = 7627.567389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.398 6.398 3 C 0.054 3.946 4 C 0.121 3.879 5 N -0.600 5.600 6 C 0.122 3.878 7 C 0.463 3.537 8 O -0.549 6.549 9 O -0.505 6.505 10 C 0.520 3.480 11 O -0.547 6.547 12 C -0.108 4.108 13 C 0.075 3.925 14 H 0.001 0.999 15 C -0.556 4.556 16 H 0.044 0.956 17 C -0.025 4.025 18 N -0.942 5.942 19 Si 1.100 2.900 20 H -0.291 1.291 21 H -0.265 1.265 22 H -0.283 1.283 23 C -0.055 4.055 24 C -0.121 4.121 25 C -0.122 4.122 26 C -0.144 4.144 27 C -0.126 4.126 28 C -0.156 4.156 29 H 0.032 0.968 30 H 0.106 0.894 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.029 0.971 34 H 0.103 0.897 35 H 0.077 0.923 36 H 0.157 0.843 37 H 0.136 0.864 38 H 0.427 0.573 39 H 0.104 0.896 40 H 0.074 0.926 41 H 0.255 0.745 42 H 0.118 0.882 43 H 0.146 0.854 44 H 0.148 0.852 45 H 0.133 0.867 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.159 -18.026 8.431 20.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.318 6.318 3 C -0.024 4.024 4 C -0.001 4.001 5 N -0.335 5.335 6 C -0.003 4.003 7 C 0.305 3.695 8 O -0.439 6.439 9 O -0.318 6.318 10 C 0.309 3.691 11 O -0.423 6.423 12 C -0.148 4.148 13 C 0.056 3.944 14 H 0.020 0.980 15 C -0.594 4.594 16 H 0.062 0.938 17 C -0.224 4.224 18 N -0.580 5.580 19 Si 0.924 3.076 20 H -0.217 1.217 21 H -0.190 1.190 22 H -0.209 1.209 23 C -0.056 4.056 24 C -0.140 4.140 25 C -0.139 4.139 26 C -0.162 4.162 27 C -0.143 4.143 28 C -0.174 4.174 29 H 0.051 0.949 30 H 0.124 0.876 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.048 0.952 34 H 0.121 0.879 35 H 0.096 0.904 36 H 0.174 0.826 37 H 0.153 0.847 38 H 0.288 0.712 39 H 0.122 0.878 40 H 0.092 0.908 41 H 0.066 0.934 42 H 0.136 0.864 43 H 0.164 0.836 44 H 0.166 0.834 45 H 0.151 0.849 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.944 -15.786 7.953 18.355 hybrid contribution 1.488 -0.505 0.896 1.809 sum -3.456 -16.291 8.849 18.859 Atomic orbital electron populations 1.22899 0.79715 1.04002 1.00249 1.87749 1.21173 1.27306 1.95532 1.22859 0.93491 0.85279 1.00733 1.21515 0.92568 0.99981 0.86030 1.47663 1.67418 1.06131 1.12278 1.21247 0.90605 0.80810 1.07594 1.24522 0.91767 0.80290 0.72948 1.90765 1.53855 1.53358 1.45925 1.84478 1.39810 1.26558 1.80905 1.21000 0.75604 0.86954 0.85517 1.90721 1.51804 1.16259 1.83497 1.21602 1.01295 0.99343 0.92559 1.17681 0.95913 0.91892 0.88939 0.98049 1.21763 0.92038 0.97632 1.47952 0.93758 1.26790 1.05271 0.96492 0.93806 1.70850 0.98499 1.42309 1.46356 0.83168 0.72142 0.75346 0.76927 1.21655 1.19035 1.20913 1.20600 0.92651 0.93933 0.98412 1.21016 0.99391 0.97535 0.96007 1.21426 0.96006 1.00257 0.96262 1.21319 0.94971 0.99160 1.00719 1.21282 1.00606 0.97656 0.94805 1.21108 0.96015 1.01246 0.99058 0.94915 0.87588 0.92982 0.90251 0.95223 0.87872 0.90429 0.82551 0.84678 0.71164 0.87794 0.90772 0.93390 0.86393 0.83610 0.83444 0.84905 0.89257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 113.37 1.25 1.71 16 2 O -0.40 -8.75 9.53 -148.98 -1.42 -10.17 16 3 C 0.05 1.37 6.28 71.98 0.45 1.82 16 4 C 0.12 3.40 5.81 86.38 0.50 3.90 16 5 N -0.60 -18.90 1.92 -826.14 -1.59 -20.49 16 6 C 0.12 2.72 5.62 85.63 0.48 3.20 16 7 C 0.46 10.97 8.29 71.24 0.59 11.57 16 8 O -0.55 -18.06 17.19 21.96 0.38 -17.68 16 9 O -0.50 -8.11 13.42 -51.41 -0.69 -8.80 16 10 C 0.52 22.00 7.43 87.66 0.65 22.65 16 11 O -0.55 -29.13 14.60 -3.04 -0.04 -29.17 16 12 C -0.11 -4.39 3.49 29.85 0.10 -4.29 16 13 C 0.08 3.81 1.31 -12.29 -0.02 3.79 16 14 H 0.00 0.08 6.23 -2.39 -0.01 0.06 16 15 C -0.56 -31.10 6.40 25.60 0.16 -30.93 16 16 H 0.04 2.42 7.82 -2.91 -0.02 2.40 16 17 C -0.03 -1.51 5.45 84.65 0.46 -1.05 16 18 N -0.94 -60.97 13.63 21.45 0.29 -60.68 16 19 Si 1.10 53.94 29.91 68.60 2.05 55.99 16 20 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 22 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 23 C -0.06 -2.53 4.77 -19.87 -0.09 -2.63 16 24 C -0.12 -4.79 8.88 22.27 0.20 -4.59 16 25 C -0.12 -3.94 10.05 22.27 0.22 -3.72 16 26 C -0.14 -4.48 10.05 22.27 0.22 -4.26 16 27 C -0.13 -4.49 10.05 22.27 0.22 -4.27 16 28 C -0.16 -6.87 9.67 22.27 0.22 -6.66 16 29 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.10 2.32 8.07 -2.38 -0.02 2.31 16 35 H 0.08 2.55 7.42 -2.39 -0.02 2.54 16 36 H 0.16 2.60 7.11 -2.39 -0.02 2.59 16 37 H 0.14 2.65 6.44 -2.39 -0.02 2.64 16 38 H 0.43 3.66 9.10 -74.06 -0.67 2.98 16 39 H 0.10 3.67 7.13 -2.39 -0.02 3.65 16 40 H 0.07 2.80 8.00 -2.39 -0.02 2.78 16 41 H 0.26 16.83 6.68 -92.71 -0.62 16.21 16 42 H 0.12 4.45 7.80 -2.91 -0.02 4.43 16 43 H 0.15 3.61 8.06 -2.91 -0.02 3.58 16 44 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 45 H 0.13 3.97 8.06 -2.91 -0.02 3.95 16 46 H 0.09 4.16 7.95 -2.91 -0.02 4.14 16 Total: -1.00 -84.61 390.72 5.08 -79.54 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: 0.47 Total: 25.22 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: 5.63 Total: -13.76 kcal Atomic # 7 Polarization: -79.86 SS G_CDS: -1.30 Total: -81.16 kcal Atomic # 8 Polarization: -64.05 SS G_CDS: -1.78 Total: -65.83 kcal Atomic # 14 Polarization: 53.94 SS G_CDS: 2.05 Total: 55.99 kcal Total: -84.61 5.08 -79.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604586614.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.605 kcal (2) G-P(sol) polarization free energy of solvation -84.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds