Wall clock time and date at job start Tue Mar 31 2020 19:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 113.99971 * 2 1 4 4 C 1.52997 * 109.47370 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.46693 * 65.00189 * 4 3 2 6 6 C 1.46504 * 119.99864 * 269.99647 * 5 4 3 7 7 C 1.50689 * 109.47177 * 270.00228 * 6 5 4 8 8 O 1.20824 * 120.00430 * 359.97438 * 7 6 5 9 9 O 1.34234 * 119.99836 * 180.02562 * 7 6 5 10 10 C 1.34775 * 119.99974 * 90.00437 * 5 4 3 11 11 O 1.21284 * 119.99745 * 359.97438 * 10 5 4 12 12 C 1.50695 * 120.00135 * 180.27527 * 10 5 4 13 13 C 1.52996 * 109.47366 * 179.72039 * 12 10 5 14 14 H 1.09002 * 109.47424 * 305.00048 * 13 12 10 15 15 C 1.50702 * 109.46947 * 64.99663 * 13 12 10 16 16 H 1.08003 * 120.00210 * 234.67373 * 15 13 12 17 17 C 1.37879 * 120.00002 * 54.68120 * 15 13 12 18 18 N 1.31521 * 119.99955 * 4.88629 * 17 15 13 19 19 Si 1.86797 * 120.00137 * 184.88605 * 17 15 13 20 20 H 1.48500 * 109.47427 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46991 * 120.00022 * 19 17 15 22 22 H 1.48504 * 109.47273 * 239.99636 * 19 17 15 23 23 C 1.50700 * 109.47203 * 184.99548 * 13 12 10 24 24 C 1.38240 * 119.99749 * 151.48798 * 23 13 12 25 25 C 1.38234 * 119.99810 * 179.79289 * 24 23 13 26 26 C 1.38235 * 120.00226 * 0.43657 * 25 24 23 27 27 C 1.38239 * 119.99636 * 359.81584 * 26 25 24 28 28 C 1.38228 * 120.00149 * 359.97438 * 27 26 25 29 29 H 1.08996 * 109.47426 * 299.99995 * 1 2 3 30 30 H 1.09001 * 109.47077 * 59.99926 * 1 2 3 31 31 H 1.08999 * 109.46979 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46736 * 60.00036 * 3 2 1 33 33 H 1.08993 * 109.47203 * 300.00114 * 3 2 1 34 34 H 1.09002 * 109.47250 * 305.00636 * 4 3 2 35 35 H 1.08997 * 109.47399 * 184.99865 * 4 3 2 36 36 H 1.09001 * 109.46614 * 30.00896 * 6 5 4 37 37 H 1.09002 * 109.46351 * 149.99926 * 6 5 4 38 38 H 0.96704 * 117.00058 * 180.02562 * 9 7 6 39 39 H 1.09001 * 109.47041 * 299.72385 * 12 10 5 40 40 H 1.09000 * 109.47298 * 59.72104 * 12 10 5 41 41 H 0.96993 * 119.99922 * 180.02562 * 18 17 15 42 42 H 1.08000 * 120.00194 * 359.97438 * 24 23 13 43 43 H 1.08001 * 119.99770 * 180.27482 * 25 24 23 44 44 H 1.07996 * 120.00223 * 179.83717 * 26 25 24 45 45 H 1.08002 * 119.99999 * 179.97438 * 27 26 25 46 46 H 1.07997 * 120.00253 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5641 -1.2510 6 6 4.1063 -0.8925 -1.3404 7 6 5.5016 -1.2980 -0.9414 8 8 6.3056 -0.4567 -0.6162 9 8 5.8518 -2.5938 -0.9482 10 6 4.2633 1.3331 -2.3200 11 8 4.1556 2.5389 -2.2460 12 6 4.7111 0.6943 -3.6094 13 6 4.9628 1.7810 -4.6565 14 1 4.0694 2.3963 -4.7637 15 6 6.1173 2.6442 -4.2171 16 1 5.9940 3.7147 -4.1438 17 6 7.3311 2.0674 -3.9087 18 7 7.5109 0.7772 -4.0897 19 14 8.7201 3.1184 -3.2341 20 1 8.2660 4.5280 -3.1243 21 1 9.1116 2.6190 -1.8914 22 1 9.8871 3.0436 -4.1495 23 6 5.2914 1.1378 -5.9791 24 6 4.9896 1.7911 -7.1594 25 6 5.2949 1.2030 -8.3725 26 6 5.8938 -0.0425 -8.4056 27 6 6.1908 -0.6981 -7.2253 28 6 5.8895 -0.1081 -6.0122 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6885 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.8508 0.5685 0.8426 35 1 3.9784 2.1766 0.0902 36 1 3.3857 -1.3630 -0.6715 37 1 3.9138 -1.2121 -2.3646 38 1 6.7578 -2.8052 -0.6841 39 1 5.6309 0.1352 -3.4375 40 1 3.9359 0.0170 -3.9678 41 1 8.3646 0.3713 -3.8724 42 1 4.5180 2.7623 -7.1336 43 1 5.0632 1.7154 -9.2945 44 1 6.1300 -0.5031 -9.3534 45 1 6.6584 -1.6713 -7.2511 46 1 6.1219 -0.6201 -5.0901 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604586615.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:01 Heat of formation + Delta-G solvation = -133.438939 kcal Electronic energy + Delta-G solvation = -30572.804742 eV Core-core repulsion = 26428.271910 eV Total energy + Delta-G solvation = -4144.532832 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.18288 -39.02503 -38.19920 -37.60059 -35.85598 -34.88512 -34.15357 -31.19073 -30.62388 -29.79043 -28.37342 -27.63635 -26.39496 -25.58605 -23.16716 -22.15302 -21.77293 -21.27581 -19.72258 -18.32761 -17.84181 -16.90789 -16.46780 -16.40742 -16.16152 -15.94653 -15.52869 -15.18470 -15.09347 -14.85286 -14.69958 -13.95146 -13.82710 -13.59211 -12.98190 -12.93745 -12.60025 -12.42031 -12.23210 -12.09522 -12.01990 -11.91528 -11.59819 -11.43961 -11.37641 -11.15962 -11.04778 -10.85492 -10.72608 -10.40019 -10.32287 -10.14446 -9.91064 -9.73821 -9.27303 -9.16435 -8.78938 -8.39781 -8.31177 -7.78874 -7.41709 -5.92787 -4.01658 2.51348 2.57386 2.59906 2.98716 3.36522 3.45020 3.49540 3.53779 3.65458 3.92315 4.50436 4.99055 5.07446 5.11706 5.19632 5.24396 5.31269 5.35031 5.35489 5.49665 5.53549 5.62370 5.64464 5.82779 5.90776 5.95412 6.02171 6.05674 6.32913 6.44717 6.58012 6.70244 6.78914 6.80519 6.86890 7.07476 7.15110 7.17497 7.27516 7.47587 7.55376 7.69388 7.92248 7.98274 8.12826 8.19609 8.23884 8.38140 8.93723 9.08012 9.62308 11.01738 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010161 B = 0.004664 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.967185 B = 6002.338161 C = 6600.111358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.391 6.391 3 C 0.046 3.954 4 C 0.123 3.877 5 N -0.607 5.607 6 C 0.132 3.868 7 C 0.449 3.551 8 O -0.490 6.490 9 O -0.523 6.523 10 C 0.533 3.467 11 O -0.516 6.516 12 C -0.141 4.141 13 C 0.089 3.911 14 H 0.037 0.963 15 C -0.473 4.473 16 H 0.059 0.941 17 C 0.065 3.935 18 N -0.885 5.885 19 Si 0.890 3.110 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.287 1.287 23 C -0.026 4.026 24 C -0.132 4.132 25 C -0.141 4.141 26 C -0.154 4.154 27 C -0.142 4.142 28 C -0.069 4.069 29 H 0.037 0.963 30 H 0.040 0.960 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.405 0.595 39 H 0.133 0.867 40 H 0.053 0.947 41 H 0.259 0.741 42 H 0.105 0.895 43 H 0.101 0.899 44 H 0.099 0.901 45 H 0.101 0.899 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.330 -8.006 5.656 14.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.310 6.310 3 C -0.032 4.032 4 C -0.001 4.001 5 N -0.343 5.343 6 C 0.005 3.995 7 C 0.288 3.712 8 O -0.375 6.375 9 O -0.335 6.335 10 C 0.324 3.676 11 O -0.389 6.389 12 C -0.181 4.181 13 C 0.070 3.930 14 H 0.055 0.945 15 C -0.511 4.511 16 H 0.077 0.923 17 C -0.135 4.135 18 N -0.524 5.524 19 Si 0.719 3.281 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.213 1.213 23 C -0.027 4.027 24 C -0.150 4.150 25 C -0.159 4.159 26 C -0.172 4.172 27 C -0.161 4.161 28 C -0.087 4.087 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.119 0.881 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.264 0.736 39 H 0.151 0.849 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.123 0.877 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.119 0.881 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.289 -7.235 5.687 13.804 hybrid contribution 1.602 0.560 0.564 1.788 sum -8.688 -6.675 6.251 12.614 Atomic orbital electron populations 1.22695 0.81425 1.02426 0.99819 1.87831 1.19416 1.28300 1.95437 1.23085 0.94745 0.84614 1.00731 1.21375 0.91219 1.00763 0.86715 1.47774 1.68855 1.04781 1.12910 1.20866 0.90082 0.82967 1.05561 1.24446 0.92150 0.79893 0.74689 1.90793 1.52217 1.51685 1.42788 1.84502 1.38021 1.29007 1.81980 1.21209 0.74193 0.87164 0.85031 1.90608 1.50365 1.14308 1.83626 1.22031 1.02473 1.01121 0.92488 1.17630 0.96420 0.91992 0.86995 0.94461 1.20964 0.94662 0.93642 1.41808 0.92279 1.24838 0.98297 0.95124 0.95282 1.69641 1.24331 1.10016 1.48429 0.86538 0.82012 0.80891 0.78690 1.19881 1.21034 1.21348 1.20335 0.94211 0.92617 0.95523 1.20886 1.02317 0.99389 0.92380 1.20794 1.02033 0.96136 0.96980 1.20759 1.03046 0.96274 0.97162 1.21038 1.02118 0.99561 0.93351 1.21329 0.94814 0.95249 0.97315 0.94438 0.94134 0.89844 0.92741 0.92414 0.90653 0.88148 0.86081 0.86251 0.73630 0.84948 0.92906 0.93092 0.87679 0.88118 0.88319 0.88111 0.84492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.41 16 2 O -0.39 -4.67 9.53 -35.23 -0.34 -5.01 16 3 C 0.05 0.58 6.28 37.16 0.23 0.81 16 4 C 0.12 1.82 5.81 -4.04 -0.02 1.80 16 5 N -0.61 -10.41 1.92 -175.06 -0.34 -10.75 16 6 C 0.13 1.86 5.63 -5.20 -0.03 1.83 16 7 C 0.45 7.12 8.31 36.00 0.30 7.42 16 8 O -0.49 -10.01 17.19 -18.75 -0.32 -10.34 16 9 O -0.52 -6.53 13.42 -39.27 -0.53 -7.06 16 10 C 0.53 11.39 7.42 -10.99 -0.08 11.31 16 11 O -0.52 -12.64 14.56 5.55 0.08 -12.56 16 12 C -0.14 -3.05 2.63 -27.89 -0.07 -3.13 16 13 C 0.09 2.15 1.97 -92.92 -0.18 1.97 16 14 H 0.04 0.91 7.91 -51.93 -0.41 0.50 16 15 C -0.47 -12.93 7.27 -34.44 -0.25 -13.18 16 16 H 0.06 1.70 7.82 -52.48 -0.41 1.29 16 17 C 0.06 1.76 5.12 -17.82 -0.09 1.67 16 18 N -0.89 -23.26 7.99 55.43 0.44 -22.82 16 19 Si 0.89 22.50 29.54 -169.99 -5.02 17.48 16 20 H -0.27 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.28 -7.34 7.11 56.52 0.40 -6.94 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 C -0.03 -0.60 4.69 -104.62 -0.49 -1.09 16 24 C -0.13 -2.81 9.71 -39.58 -0.38 -3.20 16 25 C -0.14 -2.72 10.05 -39.58 -0.40 -3.12 16 26 C -0.15 -2.91 10.05 -39.58 -0.40 -3.31 16 27 C -0.14 -2.84 10.05 -39.58 -0.40 -3.23 16 28 C -0.07 -1.51 7.45 -39.59 -0.30 -1.81 16 29 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.00 8.07 -51.93 -0.42 0.58 16 35 H 0.10 1.66 7.42 -51.93 -0.39 1.27 16 36 H 0.12 1.39 7.11 -51.93 -0.37 1.02 16 37 H 0.12 1.57 6.43 -51.93 -0.33 1.24 16 38 H 0.41 3.68 9.10 45.56 0.41 4.10 16 39 H 0.13 3.10 4.59 -51.93 -0.24 2.86 16 40 H 0.05 0.99 7.40 -51.93 -0.38 0.61 16 41 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 42 H 0.11 2.13 8.06 -52.49 -0.42 1.71 16 43 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 44 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 45 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 46 H 0.14 3.11 5.18 -52.49 -0.27 2.84 16 LS Contribution 381.20 15.07 5.74 5.74 Total: -1.00 -33.28 381.20 -7.47 -40.75 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -5.75 Total: 8.40 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -1.45 Total: -3.85 kcal Atomic # 7 Polarization: -33.67 SS G_CDS: 0.11 Total: -33.57 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -1.10 Total: -34.96 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.28 -7.47 -40.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604586615.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.688 kcal (2) G-P(sol) polarization free energy of solvation -33.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds