Wall clock time and date at job start Tue Mar 31 2020 19:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 113.99971 * 2 1 4 4 C 1.52997 * 109.47370 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.46693 * 65.00189 * 4 3 2 6 6 C 1.46504 * 119.99864 * 269.99647 * 5 4 3 7 7 C 1.50689 * 109.47177 * 270.00228 * 6 5 4 8 8 O 1.20824 * 120.00430 * 359.97438 * 7 6 5 9 9 O 1.34234 * 119.99836 * 180.02562 * 7 6 5 10 10 C 1.34775 * 119.99974 * 90.00437 * 5 4 3 11 11 O 1.21284 * 119.99745 * 359.97438 * 10 5 4 12 12 C 1.50695 * 120.00135 * 180.27527 * 10 5 4 13 13 C 1.52996 * 109.47366 * 179.72039 * 12 10 5 14 14 H 1.09002 * 109.47424 * 305.00048 * 13 12 10 15 15 C 1.50702 * 109.46947 * 64.99663 * 13 12 10 16 16 H 1.08003 * 120.00210 * 234.67373 * 15 13 12 17 17 C 1.37879 * 120.00002 * 54.68120 * 15 13 12 18 18 N 1.31521 * 119.99955 * 4.88629 * 17 15 13 19 19 Si 1.86797 * 120.00137 * 184.88605 * 17 15 13 20 20 H 1.48500 * 109.47427 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46991 * 120.00022 * 19 17 15 22 22 H 1.48504 * 109.47273 * 239.99636 * 19 17 15 23 23 C 1.50700 * 109.47203 * 184.99548 * 13 12 10 24 24 C 1.38240 * 119.99749 * 151.48798 * 23 13 12 25 25 C 1.38234 * 119.99810 * 179.79289 * 24 23 13 26 26 C 1.38235 * 120.00226 * 0.43657 * 25 24 23 27 27 C 1.38239 * 119.99636 * 359.81584 * 26 25 24 28 28 C 1.38228 * 120.00149 * 359.97438 * 27 26 25 29 29 H 1.08996 * 109.47426 * 299.99995 * 1 2 3 30 30 H 1.09001 * 109.47077 * 59.99926 * 1 2 3 31 31 H 1.08999 * 109.46979 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46736 * 60.00036 * 3 2 1 33 33 H 1.08993 * 109.47203 * 300.00114 * 3 2 1 34 34 H 1.09002 * 109.47250 * 305.00636 * 4 3 2 35 35 H 1.08997 * 109.47399 * 184.99865 * 4 3 2 36 36 H 1.09001 * 109.46614 * 30.00896 * 6 5 4 37 37 H 1.09002 * 109.46351 * 149.99926 * 6 5 4 38 38 H 0.96704 * 117.00058 * 180.02562 * 9 7 6 39 39 H 1.09001 * 109.47041 * 299.72385 * 12 10 5 40 40 H 1.09000 * 109.47298 * 59.72104 * 12 10 5 41 41 H 0.96993 * 119.99922 * 180.02562 * 18 17 15 42 42 H 1.08000 * 120.00194 * 359.97438 * 24 23 13 43 43 H 1.08001 * 119.99770 * 180.27482 * 25 24 23 44 44 H 1.07996 * 120.00223 * 179.83717 * 26 25 24 45 45 H 1.08002 * 119.99999 * 179.97438 * 27 26 25 46 46 H 1.07997 * 120.00253 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5641 -1.2510 6 6 4.1063 -0.8925 -1.3404 7 6 5.5016 -1.2980 -0.9414 8 8 6.3056 -0.4567 -0.6162 9 8 5.8518 -2.5938 -0.9482 10 6 4.2633 1.3331 -2.3200 11 8 4.1556 2.5389 -2.2460 12 6 4.7111 0.6943 -3.6094 13 6 4.9628 1.7810 -4.6565 14 1 4.0694 2.3963 -4.7637 15 6 6.1173 2.6442 -4.2171 16 1 5.9940 3.7147 -4.1438 17 6 7.3311 2.0674 -3.9087 18 7 7.5109 0.7772 -4.0897 19 14 8.7201 3.1184 -3.2341 20 1 8.2660 4.5280 -3.1243 21 1 9.1116 2.6190 -1.8914 22 1 9.8871 3.0436 -4.1495 23 6 5.2914 1.1378 -5.9791 24 6 4.9896 1.7911 -7.1594 25 6 5.2949 1.2030 -8.3725 26 6 5.8938 -0.0425 -8.4056 27 6 6.1908 -0.6981 -7.2253 28 6 5.8895 -0.1081 -6.0122 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6885 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.8508 0.5685 0.8426 35 1 3.9784 2.1766 0.0902 36 1 3.3857 -1.3630 -0.6715 37 1 3.9138 -1.2121 -2.3646 38 1 6.7578 -2.8052 -0.6841 39 1 5.6309 0.1352 -3.4375 40 1 3.9359 0.0170 -3.9678 41 1 8.3646 0.3713 -3.8724 42 1 4.5180 2.7623 -7.1336 43 1 5.0632 1.7154 -9.2945 44 1 6.1300 -0.5031 -9.3534 45 1 6.6584 -1.6713 -7.2511 46 1 6.1219 -0.6201 -5.0901 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604586615.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:01 Heat of formation + Delta-G solvation = -154.071219 kcal Electronic energy + Delta-G solvation = -30573.699425 eV Core-core repulsion = 26428.271910 eV Total energy + Delta-G solvation = -4145.427515 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.54340 -40.48903 -39.70415 -38.68521 -37.09832 -36.34914 -35.92720 -33.03043 -31.90731 -31.36057 -29.95765 -28.90156 -27.80466 -26.86663 -24.73881 -23.56627 -23.09203 -22.79710 -21.37456 -19.83835 -19.07242 -18.39497 -18.12149 -17.67811 -17.32050 -17.27652 -16.89387 -16.83807 -16.50926 -16.17048 -15.82433 -15.61464 -15.43602 -15.10674 -14.66498 -14.43135 -13.95375 -13.78515 -13.52794 -13.45736 -13.32997 -13.28840 -13.13034 -12.93974 -12.86330 -12.76523 -12.69338 -12.41506 -12.25371 -12.04186 -11.86263 -11.69858 -11.67227 -11.07477 -11.05026 -10.69079 -10.55175 -10.27789 -9.74063 -9.38623 -9.10798 -7.96176 -6.10098 0.90329 1.01383 1.29896 1.32503 1.35906 1.43234 1.67484 2.06606 2.42990 2.45895 2.90386 3.20495 3.38795 3.80565 4.05769 4.13559 4.21376 4.33538 4.38828 4.41941 4.44001 4.50984 4.51792 4.61796 4.62370 4.68384 4.70339 4.80007 4.84843 4.90745 4.93690 5.08242 5.14776 5.33655 5.54912 5.57932 5.63804 5.68340 5.72076 5.88104 5.95925 6.09840 6.20874 6.34392 6.41762 6.47556 6.58909 6.83420 7.08894 7.45955 7.52541 8.92129 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010161 B = 0.004664 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.967185 B = 6002.338161 C = 6600.111358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.401 6.401 3 C 0.059 3.941 4 C 0.118 3.882 5 N -0.602 5.602 6 C 0.128 3.872 7 C 0.457 3.543 8 O -0.543 6.543 9 O -0.508 6.508 10 C 0.527 3.473 11 O -0.561 6.561 12 C -0.131 4.131 13 C 0.089 3.911 14 H 0.018 0.982 15 C -0.489 4.489 16 H 0.027 0.973 17 C 0.039 3.961 18 N -0.877 5.877 19 Si 0.922 3.078 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.277 1.277 23 C -0.050 4.050 24 C -0.150 4.150 25 C -0.139 4.139 26 C -0.148 4.148 27 C -0.146 4.146 28 C -0.080 4.080 29 H 0.051 0.949 30 H 0.037 0.963 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.037 0.963 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.156 0.844 37 H 0.133 0.867 38 H 0.422 0.578 39 H 0.120 0.880 40 H 0.079 0.921 41 H 0.257 0.743 42 H 0.103 0.897 43 H 0.132 0.868 44 H 0.136 0.864 45 H 0.126 0.874 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.031 -10.536 4.913 16.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.019 4.019 4 C -0.004 4.004 5 N -0.336 5.336 6 C 0.003 3.997 7 C 0.298 3.702 8 O -0.432 6.432 9 O -0.321 6.321 10 C 0.318 3.682 11 O -0.438 6.438 12 C -0.171 4.171 13 C 0.070 3.930 14 H 0.036 0.964 15 C -0.527 4.527 16 H 0.046 0.954 17 C -0.161 4.161 18 N -0.516 5.516 19 Si 0.751 3.249 20 H -0.209 1.209 21 H -0.218 1.218 22 H -0.203 1.203 23 C -0.050 4.050 24 C -0.168 4.168 25 C -0.157 4.157 26 C -0.166 4.166 27 C -0.164 4.164 28 C -0.099 4.099 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.121 0.879 32 H 0.097 0.903 33 H 0.055 0.945 34 H 0.112 0.888 35 H 0.094 0.906 36 H 0.173 0.827 37 H 0.150 0.850 38 H 0.283 0.717 39 H 0.137 0.863 40 H 0.097 0.903 41 H 0.067 0.933 42 H 0.121 0.879 43 H 0.150 0.850 44 H 0.154 0.846 45 H 0.144 0.856 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -11.001 -9.844 4.955 15.572 hybrid contribution 1.761 1.242 0.776 2.291 sum -9.240 -8.602 5.731 13.864 Atomic orbital electron populations 1.22898 0.79657 1.03929 1.00375 1.87782 1.21243 1.27495 1.95541 1.22834 0.92930 0.85208 1.00941 1.21500 0.92978 0.99783 0.86152 1.47684 1.67460 1.06000 1.12491 1.21185 0.90117 0.81136 1.07236 1.24643 0.92104 0.80184 0.73226 1.90790 1.53748 1.53224 1.45485 1.84456 1.39449 1.26942 1.81221 1.21215 0.74036 0.86845 0.86070 1.90581 1.52570 1.16099 1.84515 1.21837 1.02601 1.00392 0.92239 1.17528 0.94373 0.92300 0.88817 0.96374 1.20936 0.96230 0.92566 1.43009 0.95450 1.25145 0.99118 0.96054 0.95774 1.69734 1.24103 1.09665 1.48116 0.86048 0.81127 0.79628 0.78075 1.20931 1.21786 1.20291 1.20269 0.95958 0.93634 0.95175 1.21064 1.03022 0.99651 0.93090 1.21153 1.00914 0.96428 0.97197 1.21192 1.01271 0.95764 0.98344 1.21347 1.01572 1.00594 0.92882 1.21259 0.95557 0.95061 0.98009 0.93040 0.94446 0.87893 0.90267 0.94461 0.88756 0.90567 0.82661 0.84981 0.71672 0.86252 0.90324 0.93332 0.87863 0.84998 0.84619 0.85631 0.85626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.67 16 2 O -0.40 -8.73 9.53 -148.98 -1.42 -10.15 16 3 C 0.06 1.42 6.28 71.98 0.45 1.88 16 4 C 0.12 3.52 5.81 86.38 0.50 4.02 16 5 N -0.60 -20.68 1.92 -826.15 -1.59 -22.27 16 6 C 0.13 3.43 5.63 85.63 0.48 3.91 16 7 C 0.46 13.96 8.31 71.23 0.59 14.55 16 8 O -0.54 -22.30 17.19 21.97 0.38 -21.93 16 9 O -0.51 -11.57 13.42 -51.45 -0.69 -12.26 16 10 C 0.53 23.27 7.42 87.66 0.65 23.92 16 11 O -0.56 -29.04 14.56 -3.04 -0.04 -29.09 16 12 C -0.13 -5.77 2.63 29.85 0.08 -5.69 16 13 C 0.09 4.47 1.97 -12.29 -0.02 4.45 16 14 H 0.02 0.93 7.91 -2.39 -0.02 0.92 16 15 C -0.49 -27.98 7.27 25.60 0.19 -27.79 16 16 H 0.03 1.68 7.82 -2.91 -0.02 1.66 16 17 C 0.04 2.17 5.12 84.65 0.43 2.61 16 18 N -0.88 -46.59 7.99 21.45 0.17 -46.42 16 19 Si 0.92 47.16 29.54 68.60 2.03 49.19 16 20 H -0.28 -14.84 7.11 99.48 0.71 -14.14 16 21 H -0.29 -15.15 7.11 99.48 0.71 -14.44 16 22 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 23 C -0.05 -2.31 4.69 -19.86 -0.09 -2.40 16 24 C -0.15 -6.38 9.71 22.27 0.22 -6.16 16 25 C -0.14 -5.00 10.05 22.27 0.22 -4.77 16 26 C -0.15 -5.03 10.05 22.27 0.22 -4.81 16 27 C -0.15 -5.42 10.05 22.27 0.22 -5.20 16 28 C -0.08 -3.48 7.45 22.27 0.17 -3.31 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.04 0.60 8.14 -2.39 -0.02 0.59 16 31 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.09 2.42 8.07 -2.39 -0.02 2.40 16 35 H 0.08 2.64 7.42 -2.39 -0.02 2.62 16 36 H 0.16 3.11 7.11 -2.39 -0.02 3.09 16 37 H 0.13 3.23 6.43 -2.39 -0.02 3.22 16 38 H 0.42 6.81 9.10 -74.05 -0.67 6.14 16 39 H 0.12 5.66 4.59 -2.39 -0.01 5.65 16 40 H 0.08 2.96 7.40 -2.39 -0.02 2.94 16 41 H 0.26 13.43 8.31 -92.71 -0.77 12.66 16 42 H 0.10 4.29 8.06 -2.91 -0.02 4.26 16 43 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 44 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 45 H 0.13 3.98 8.06 -2.91 -0.02 3.96 16 46 H 0.13 5.67 5.18 -2.91 -0.02 5.65 16 Total: -1.00 -74.68 381.20 4.72 -69.96 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: 0.33 Total: 26.09 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: 5.56 Total: -3.12 kcal Atomic # 7 Polarization: -67.28 SS G_CDS: -1.42 Total: -68.69 kcal Atomic # 8 Polarization: -71.64 SS G_CDS: -1.78 Total: -73.42 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -74.68 4.72 -69.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604586615.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.115 kcal (2) G-P(sol) polarization free energy of solvation -74.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds