Wall clock time and date at job start Tue Mar 31 2020 18:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.50700 * 109.46743 * 90.00098 * 3 2 1 5 5 C 1.38265 * 119.94309 * 269.72306 * 4 3 2 6 6 C 1.38150 * 120.05175 * 179.72628 * 5 4 3 7 7 C 1.38735 * 119.94309 * 0.57751 * 6 5 4 8 8 O 1.35897 * 120.05289 * 179.68086 * 7 6 5 9 9 C 1.42896 * 117.00093 * 0.02562 * 8 7 6 10 10 C 1.50707 * 109.47135 * 180.02562 * 9 8 7 11 11 O 1.20828 * 119.99723 * 359.97438 * 10 9 8 12 12 O 1.34224 * 119.99838 * 180.02562 * 10 9 8 13 13 C 1.38733 * 119.88979 * 359.69494 * 7 6 5 14 14 C 1.38148 * 119.94359 * 0.02562 * 13 7 6 15 15 C 1.34771 * 119.99594 * 180.02562 * 2 1 3 16 16 O 1.21283 * 120.00089 * 179.97438 * 15 2 1 17 17 C 1.50702 * 120.00335 * 0.02562 * 15 2 1 18 18 C 1.53003 * 109.47196 * 179.97438 * 17 15 2 19 19 C 1.52996 * 109.47022 * 179.97438 * 18 17 15 20 20 C 1.50705 * 109.46909 * 179.97438 * 19 18 17 21 21 H 1.07996 * 119.99964 * 0.02562 * 20 19 18 22 22 C 1.37881 * 119.99753 * 179.97438 * 20 19 18 23 23 N 1.31517 * 120.00033 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99902 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.46892 * 89.99886 * 24 22 20 26 26 H 1.48501 * 109.47042 * 210.00259 * 24 22 20 27 27 H 1.48497 * 109.46932 * 330.00179 * 24 22 20 28 28 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 29 29 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 30 30 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 31 31 H 1.09000 * 109.46877 * 210.00112 * 3 2 1 32 32 H 1.09000 * 109.47251 * 330.00217 * 3 2 1 33 33 H 1.07992 * 119.97344 * 359.97438 * 5 4 3 34 34 H 1.08001 * 120.02752 * 180.24938 * 6 5 4 35 35 H 1.08998 * 109.47026 * 299.99636 * 9 8 7 36 36 H 1.08993 * 109.47393 * 60.00486 * 9 8 7 37 37 H 0.96708 * 116.99788 * 180.02562 * 12 10 9 38 38 H 1.08003 * 120.02962 * 179.97438 * 13 7 6 39 39 H 1.07999 * 119.97074 * 179.97438 * 14 13 7 40 40 H 1.09000 * 109.47188 * 299.99755 * 17 15 2 41 41 H 1.08996 * 109.47042 * 59.99980 * 17 15 2 42 42 H 1.09000 * 109.46913 * 299.99998 * 18 17 15 43 43 H 1.09001 * 109.47340 * 59.99709 * 18 17 15 44 44 H 1.09000 * 109.47493 * 299.99911 * 19 18 17 45 45 H 1.09001 * 109.47082 * 59.99818 * 19 18 17 46 46 H 0.96996 * 120.00081 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 1.4209 5 6 1.5289 2.5066 2.0696 6 6 1.7542 2.9020 3.3740 7 6 2.9102 2.5026 4.0289 8 8 3.1371 2.8956 5.3099 9 6 2.1425 3.7193 5.9216 10 6 2.5633 4.0532 7.3297 11 8 3.6076 3.6289 7.7647 12 8 1.7775 4.8211 8.1007 13 6 3.8342 1.7015 3.3738 14 6 3.6015 1.3041 2.0713 15 6 2.1388 -1.1672 -0.0005 16 8 3.3517 -1.1673 -0.0010 17 6 1.3853 -2.4723 -0.0017 18 6 2.3795 -3.6353 -0.0027 19 6 1.6145 -4.9602 -0.0033 20 6 2.5938 -6.1057 -0.0049 21 1 3.6556 -5.9084 -0.0051 22 6 2.1341 -7.4056 -0.0051 23 7 0.8411 -7.6459 -0.0044 24 14 3.3480 -8.8255 -0.0065 25 1 3.6705 -9.2023 1.3932 26 1 2.7476 -9.9894 -0.7066 27 1 4.5908 -8.4136 -0.7071 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 3.1500 1.1383 -0.5139 32 1 1.6085 2.0284 -0.5138 33 1 0.6318 2.8217 1.5576 34 1 1.0335 3.5259 3.8818 35 1 2.0302 4.6396 5.3485 36 1 1.1921 3.1862 5.9429 37 1 2.0898 5.0084 8.9966 38 1 4.7351 1.3896 3.8813 39 1 4.3208 0.6809 1.5608 40 1 0.7583 -2.5307 0.8880 41 1 0.7590 -2.5294 -0.8919 42 1 3.0062 -3.5767 -0.8927 43 1 3.0062 -3.5783 0.8873 44 1 0.9881 -5.0185 0.8869 45 1 0.9875 -5.0174 -0.8931 46 1 0.5177 -8.5604 -0.0042 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606161812.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:42 Heat of formation + Delta-G solvation = -145.081050 kcal Electronic energy + Delta-G solvation = -27536.217147 eV Core-core repulsion = 23391.179476 eV Total energy + Delta-G solvation = -4145.037672 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.09101 -40.31835 -39.63072 -37.90518 -36.63921 -35.43583 -34.20062 -32.21645 -31.57162 -31.19482 -29.60171 -27.98296 -27.09825 -25.56276 -23.62380 -23.42151 -22.27411 -21.35242 -20.22149 -19.11522 -18.86869 -18.09431 -17.47588 -17.19812 -16.71728 -16.35743 -16.23966 -15.89894 -15.67835 -15.44287 -15.07589 -14.48150 -14.37796 -14.06254 -13.74073 -13.67567 -13.34569 -13.02964 -12.93661 -12.74787 -12.59995 -12.23266 -12.14807 -12.03172 -11.89763 -11.68481 -11.48754 -11.30047 -11.23538 -10.95412 -10.78506 -10.54707 -10.51169 -9.65789 -9.63914 -9.26160 -9.22595 -9.00824 -8.71365 -8.40763 -8.29855 -5.95659 -3.96782 1.07117 1.11607 1.56874 1.75905 2.90652 3.06226 3.17101 3.36523 3.42165 3.47120 3.63231 4.25124 4.35960 4.44999 4.51021 4.56979 4.58469 4.69228 4.78886 5.03089 5.08729 5.15319 5.32100 5.34871 5.40426 5.45126 5.58209 5.60974 5.72475 5.76817 5.82157 5.86381 5.95933 6.04823 6.26496 6.42918 6.48091 6.51222 6.75772 6.95974 6.96230 7.18896 7.27251 7.44766 7.73351 7.86263 8.05209 8.42366 8.49446 9.10273 9.67000 11.15826 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012733 B = 0.001990 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.441828 B =14067.004037 C =15315.146432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.622 5.622 3 C 0.158 3.842 4 C -0.136 4.136 5 C -0.067 4.067 6 C -0.213 4.213 7 C 0.126 3.874 8 O -0.296 6.296 9 C 0.069 3.931 10 C 0.481 3.519 11 O -0.489 6.489 12 O -0.512 6.512 13 C -0.145 4.145 14 C -0.052 4.052 15 C 0.515 3.485 16 O -0.534 6.534 17 C -0.137 4.137 18 C -0.095 4.095 19 C 0.020 3.980 20 C -0.517 4.517 21 H 0.056 0.944 22 C 0.055 3.945 23 N -0.898 5.898 24 Si 0.892 3.108 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.274 1.274 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.420 0.580 38 H 0.133 0.867 39 H 0.140 0.860 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.015 0.985 45 H 0.015 0.985 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.489 30.297 8.404 31.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.357 5.357 3 C 0.035 3.965 4 C -0.138 4.138 5 C -0.085 4.085 6 C -0.232 4.232 7 C 0.081 3.919 8 O -0.210 6.210 9 C -0.007 4.007 10 C 0.322 3.678 11 O -0.375 6.375 12 O -0.326 6.326 13 C -0.163 4.163 14 C -0.071 4.071 15 C 0.305 3.695 16 O -0.410 6.410 17 C -0.176 4.176 18 C -0.133 4.133 19 C -0.017 4.017 20 C -0.555 4.555 21 H 0.074 0.926 22 C -0.146 4.146 23 N -0.538 5.538 24 Si 0.720 3.280 25 H -0.207 1.207 26 H -0.213 1.213 27 H -0.198 1.198 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.280 0.720 38 H 0.151 0.849 39 H 0.157 0.843 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.033 0.967 45 H 0.034 0.966 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.637 29.886 8.232 31.212 hybrid contribution 0.342 -0.559 0.746 0.993 sum -3.295 29.326 8.978 30.846 Atomic orbital electron populations 1.21804 0.79514 1.03247 1.01843 1.48043 1.06899 1.05576 1.75165 1.20258 0.98682 0.85319 0.92241 1.20239 0.95581 1.00067 0.97898 1.20794 0.98180 0.96004 0.93546 1.21153 0.98222 1.06751 0.97081 1.18961 0.94746 0.95647 0.82499 1.86077 1.44367 1.65161 1.25402 1.21781 0.92657 0.97452 0.88820 1.22655 0.81799 0.75519 0.87877 1.90807 1.23859 1.49113 1.73685 1.84425 1.52291 1.65170 1.30703 1.20500 1.00168 1.00547 0.95102 1.21128 0.96826 0.96110 0.93033 1.21279 0.88307 0.85458 0.74446 1.90643 1.14230 1.87313 1.48804 1.21869 1.00348 0.91950 1.03456 1.21451 0.96764 0.93437 1.01643 1.19131 0.95423 0.90052 0.97067 1.21274 0.93251 0.90943 1.50026 0.92586 1.25026 0.95128 0.98984 0.95434 1.69961 1.12490 1.20026 1.51283 0.86593 0.81401 0.81933 0.78100 1.20688 1.21283 1.19840 0.92781 0.91413 0.90347 0.89049 0.90034 0.85729 0.85454 0.87510 0.87431 0.71992 0.84875 0.84257 0.89514 0.89435 0.92716 0.92751 0.96660 0.96637 0.93103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.67 10.29 59.85 0.62 1.28 16 2 N -0.62 -7.35 2.86 -182.95 -0.52 -7.87 16 3 C 0.16 1.60 5.57 -5.19 -0.03 1.57 16 4 C -0.14 -1.43 5.46 -104.60 -0.57 -2.01 16 5 C -0.07 -0.57 9.69 -39.60 -0.38 -0.95 16 6 C -0.21 -1.77 9.04 -39.43 -0.36 -2.13 16 7 C 0.13 1.33 6.69 -39.22 -0.26 1.06 16 8 O -0.30 -3.13 9.67 -39.37 -0.38 -3.51 16 9 C 0.07 0.44 5.33 36.01 0.19 0.63 16 10 C 0.48 3.65 8.40 36.01 0.30 3.95 16 11 O -0.49 -5.88 17.26 -25.48 -0.44 -6.31 16 12 O -0.51 -2.22 13.42 -39.24 -0.53 -2.75 16 13 C -0.14 -1.69 9.99 -39.43 -0.39 -2.09 16 14 C -0.05 -0.63 9.69 -39.60 -0.38 -1.02 16 15 C 0.52 8.23 7.67 -10.99 -0.08 8.14 16 16 O -0.53 -10.25 15.09 5.55 0.08 -10.17 16 17 C -0.14 -2.28 4.25 -27.88 -0.12 -2.40 16 18 C -0.09 -2.07 4.44 -26.73 -0.12 -2.18 16 19 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 20 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 21 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 22 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 23 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 24 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 25 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.40 7.89 -51.93 -0.41 -0.01 16 30 H 0.08 0.66 6.44 -51.93 -0.33 0.33 16 31 H 0.09 1.06 7.36 -51.93 -0.38 0.67 16 32 H 0.08 0.59 7.83 -51.93 -0.41 0.18 16 33 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 34 H 0.13 0.67 6.30 -52.49 -0.33 0.34 16 35 H 0.11 0.40 7.66 -51.93 -0.40 0.00 16 36 H 0.11 0.46 7.66 -51.93 -0.40 0.06 16 37 H 0.42 0.17 9.10 45.56 0.41 0.58 16 38 H 0.13 1.50 8.06 -52.48 -0.42 1.07 16 39 H 0.14 1.84 7.58 -52.49 -0.40 1.44 16 40 H 0.09 1.35 8.11 -51.93 -0.42 0.93 16 41 H 0.09 1.32 7.40 -51.93 -0.38 0.93 16 42 H 0.05 1.23 8.10 -51.93 -0.42 0.81 16 43 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 394.64 15.07 5.95 5.95 Total: -1.00 -38.02 394.64 -8.21 -46.23 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -5.94 Total: -2.67 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -2.14 Total: -9.60 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: 0.21 Total: -34.35 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -1.26 Total: -22.74 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -38.02 -8.21 -46.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606161812.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.851 kcal (2) G-P(sol) polarization free energy of solvation -38.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds