Wall clock time and date at job start Tue Mar 31 2020 18:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.50700 * 109.46743 * 90.00098 * 3 2 1 5 5 C 1.38265 * 119.94309 * 269.72306 * 4 3 2 6 6 C 1.38150 * 120.05175 * 179.72628 * 5 4 3 7 7 C 1.38735 * 119.94309 * 0.57751 * 6 5 4 8 8 O 1.35897 * 120.05289 * 179.68086 * 7 6 5 9 9 C 1.42896 * 117.00093 * 0.02562 * 8 7 6 10 10 C 1.50707 * 109.47135 * 180.02562 * 9 8 7 11 11 O 1.20828 * 119.99723 * 359.97438 * 10 9 8 12 12 O 1.34224 * 119.99838 * 180.02562 * 10 9 8 13 13 C 1.38733 * 119.88979 * 359.69494 * 7 6 5 14 14 C 1.38148 * 119.94359 * 0.02562 * 13 7 6 15 15 C 1.34771 * 119.99594 * 180.02562 * 2 1 3 16 16 O 1.21283 * 120.00089 * 179.97438 * 15 2 1 17 17 C 1.50702 * 120.00335 * 0.02562 * 15 2 1 18 18 C 1.53003 * 109.47196 * 179.97438 * 17 15 2 19 19 C 1.52996 * 109.47022 * 179.97438 * 18 17 15 20 20 C 1.50705 * 109.46909 * 179.97438 * 19 18 17 21 21 H 1.07996 * 119.99964 * 0.02562 * 20 19 18 22 22 C 1.37881 * 119.99753 * 179.97438 * 20 19 18 23 23 N 1.31517 * 120.00033 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99902 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.46892 * 89.99886 * 24 22 20 26 26 H 1.48501 * 109.47042 * 210.00259 * 24 22 20 27 27 H 1.48497 * 109.46932 * 330.00179 * 24 22 20 28 28 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 29 29 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 30 30 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 31 31 H 1.09000 * 109.46877 * 210.00112 * 3 2 1 32 32 H 1.09000 * 109.47251 * 330.00217 * 3 2 1 33 33 H 1.07992 * 119.97344 * 359.97438 * 5 4 3 34 34 H 1.08001 * 120.02752 * 180.24938 * 6 5 4 35 35 H 1.08998 * 109.47026 * 299.99636 * 9 8 7 36 36 H 1.08993 * 109.47393 * 60.00486 * 9 8 7 37 37 H 0.96708 * 116.99788 * 180.02562 * 12 10 9 38 38 H 1.08003 * 120.02962 * 179.97438 * 13 7 6 39 39 H 1.07999 * 119.97074 * 179.97438 * 14 13 7 40 40 H 1.09000 * 109.47188 * 299.99755 * 17 15 2 41 41 H 1.08996 * 109.47042 * 59.99980 * 17 15 2 42 42 H 1.09000 * 109.46913 * 299.99998 * 18 17 15 43 43 H 1.09001 * 109.47340 * 59.99709 * 18 17 15 44 44 H 1.09000 * 109.47493 * 299.99911 * 19 18 17 45 45 H 1.09001 * 109.47082 * 59.99818 * 19 18 17 46 46 H 0.96996 * 120.00081 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 1.4209 5 6 1.5289 2.5066 2.0696 6 6 1.7542 2.9020 3.3740 7 6 2.9102 2.5026 4.0289 8 8 3.1371 2.8956 5.3099 9 6 2.1425 3.7193 5.9216 10 6 2.5633 4.0532 7.3297 11 8 3.6076 3.6289 7.7647 12 8 1.7775 4.8211 8.1007 13 6 3.8342 1.7015 3.3738 14 6 3.6015 1.3041 2.0713 15 6 2.1388 -1.1672 -0.0005 16 8 3.3517 -1.1673 -0.0010 17 6 1.3853 -2.4723 -0.0017 18 6 2.3795 -3.6353 -0.0027 19 6 1.6145 -4.9602 -0.0033 20 6 2.5938 -6.1057 -0.0049 21 1 3.6556 -5.9084 -0.0051 22 6 2.1341 -7.4056 -0.0051 23 7 0.8411 -7.6459 -0.0044 24 14 3.3480 -8.8255 -0.0065 25 1 3.6705 -9.2023 1.3932 26 1 2.7476 -9.9894 -0.7066 27 1 4.5908 -8.4136 -0.7071 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 3.1500 1.1383 -0.5139 32 1 1.6085 2.0284 -0.5138 33 1 0.6318 2.8217 1.5576 34 1 1.0335 3.5259 3.8818 35 1 2.0302 4.6396 5.3485 36 1 1.1921 3.1862 5.9429 37 1 2.0898 5.0084 8.9966 38 1 4.7351 1.3896 3.8813 39 1 4.3208 0.6809 1.5608 40 1 0.7583 -2.5307 0.8880 41 1 0.7590 -2.5294 -0.8919 42 1 3.0062 -3.5767 -0.8927 43 1 3.0062 -3.5783 0.8873 44 1 0.9881 -5.0185 0.8869 45 1 0.9875 -5.0174 -0.8931 46 1 0.5177 -8.5604 -0.0042 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606161812.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:41 Heat of formation + Delta-G solvation = -170.150110 kcal Electronic energy + Delta-G solvation = -27537.304223 eV Core-core repulsion = 23391.179476 eV Total energy + Delta-G solvation = -4146.124748 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.72362 -41.13448 -40.58614 -38.68800 -37.19462 -36.47976 -36.09076 -34.07297 -32.45801 -31.99436 -30.31160 -29.58745 -27.85852 -26.81787 -25.19911 -24.17122 -23.03802 -22.28114 -21.77645 -20.05430 -19.70437 -18.69976 -18.50059 -18.09898 -17.74753 -17.71079 -17.22889 -16.99673 -16.51103 -16.39873 -16.18622 -16.05562 -15.37408 -14.93134 -14.73026 -14.54583 -14.42472 -14.16269 -13.85926 -13.80944 -13.64484 -13.55819 -13.27625 -13.09136 -12.75918 -12.69933 -12.66131 -12.56866 -12.48051 -12.29844 -12.12038 -11.94093 -11.60688 -11.55266 -11.44202 -11.23863 -10.70367 -10.54583 -9.98222 -9.65766 -9.17981 -8.20560 -6.30251 0.30370 0.37285 1.02132 1.27006 1.38745 1.39914 1.51456 1.69337 2.13266 2.41257 2.62422 2.83872 3.12081 3.69190 3.77199 3.90680 3.95163 4.00434 4.00946 4.13950 4.18992 4.24003 4.28113 4.40732 4.44772 4.54288 4.67895 4.75644 4.77729 4.86238 4.98167 5.05382 5.06143 5.11932 5.19356 5.22613 5.31353 5.47819 5.53177 5.61899 5.67626 5.75422 5.75974 5.86444 6.26920 6.28996 6.41994 6.84693 6.85214 7.25746 7.38080 8.90856 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012733 B = 0.001990 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.441828 B =14067.004037 C =15315.146432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.611 5.611 3 C 0.157 3.843 4 C -0.146 4.146 5 C -0.055 4.055 6 C -0.203 4.203 7 C 0.121 3.879 8 O -0.326 6.326 9 C 0.060 3.940 10 C 0.488 3.512 11 O -0.546 6.546 12 O -0.498 6.498 13 C -0.172 4.172 14 C -0.073 4.073 15 C 0.511 3.489 16 O -0.579 6.579 17 C -0.127 4.127 18 C -0.082 4.082 19 C 0.027 3.973 20 C -0.547 4.547 21 H 0.049 0.951 22 C 0.003 3.997 23 N -0.928 5.928 24 Si 0.961 3.039 25 H -0.273 1.273 26 H -0.276 1.276 27 H -0.269 1.269 28 H 0.064 0.936 29 H 0.105 0.895 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.125 0.875 33 H 0.165 0.835 34 H 0.169 0.831 35 H 0.141 0.859 36 H 0.136 0.864 37 H 0.437 0.563 38 H 0.118 0.882 39 H 0.111 0.889 40 H 0.100 0.900 41 H 0.108 0.892 42 H 0.040 0.960 43 H 0.035 0.965 44 H -0.001 1.001 45 H 0.003 0.997 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.306 32.486 8.341 34.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.343 5.343 3 C 0.035 3.965 4 C -0.148 4.148 5 C -0.073 4.073 6 C -0.221 4.221 7 C 0.076 3.924 8 O -0.240 6.240 9 C -0.015 4.015 10 C 0.331 3.669 11 O -0.436 6.436 12 O -0.313 6.313 13 C -0.191 4.191 14 C -0.092 4.092 15 C 0.301 3.699 16 O -0.459 6.459 17 C -0.167 4.167 18 C -0.120 4.120 19 C -0.010 4.010 20 C -0.585 4.585 21 H 0.068 0.932 22 C -0.195 4.195 23 N -0.568 5.568 24 Si 0.786 3.214 25 H -0.198 1.198 26 H -0.201 1.201 27 H -0.194 1.194 28 H 0.082 0.918 29 H 0.124 0.876 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.143 0.857 33 H 0.182 0.818 34 H 0.186 0.814 35 H 0.159 0.841 36 H 0.154 0.846 37 H 0.300 0.700 38 H 0.136 0.864 39 H 0.129 0.871 40 H 0.118 0.882 41 H 0.126 0.874 42 H 0.059 0.941 43 H 0.054 0.946 44 H 0.018 0.982 45 H 0.021 0.979 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.518 32.134 8.186 33.795 hybrid contribution 1.126 -1.132 0.847 1.808 sum -5.392 31.002 9.033 32.738 Atomic orbital electron populations 1.22130 0.76847 1.05168 1.03100 1.48031 1.08510 1.04760 1.73000 1.20424 0.98417 0.85242 0.92422 1.20313 0.95499 1.00896 0.98050 1.21197 0.98459 0.94191 0.93499 1.21585 0.97573 1.05961 0.96975 1.19020 0.95215 0.95412 0.82723 1.86031 1.46420 1.66045 1.25499 1.22203 0.92485 0.98704 0.88095 1.22993 0.80926 0.74536 0.88464 1.90796 1.26329 1.51542 1.74907 1.84396 1.51273 1.63909 1.31764 1.20492 1.00825 1.02322 0.95462 1.20997 0.97743 0.97028 0.93453 1.21069 0.87675 0.86511 0.74687 1.90637 1.16019 1.88007 1.51250 1.21679 0.99181 0.90701 1.05130 1.21156 0.97079 0.93723 1.00023 1.19013 0.94863 0.91648 0.95503 1.21682 0.93565 0.92564 1.50724 0.93241 1.25904 0.97127 1.01763 0.94725 1.70060 1.14181 1.20990 1.51545 0.85508 0.78995 0.78422 0.78506 1.19821 1.20124 1.19359 0.91756 0.87647 0.90451 0.91410 0.85704 0.81754 0.81382 0.84132 0.84639 0.70010 0.86401 0.87097 0.88151 0.87396 0.94107 0.94601 0.98223 0.97877 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.89 10.29 127.77 1.31 2.20 16 2 N -0.61 -13.23 2.86 -851.11 -2.43 -15.66 16 3 C 0.16 2.89 5.57 85.63 0.48 3.37 16 4 C -0.15 -2.87 5.46 -19.85 -0.11 -2.97 16 5 C -0.06 -0.71 9.69 22.26 0.22 -0.49 16 6 C -0.20 -2.59 9.04 22.37 0.20 -2.39 16 7 C 0.12 2.44 6.69 22.51 0.15 2.59 16 8 O -0.33 -6.66 9.67 -73.31 -0.71 -7.37 16 9 C 0.06 0.60 5.33 71.24 0.38 0.98 16 10 C 0.49 6.73 8.40 71.24 0.60 7.33 16 11 O -0.55 -13.34 17.26 28.39 0.49 -12.85 16 12 O -0.50 -3.13 13.42 -51.36 -0.69 -3.82 16 13 C -0.17 -4.34 9.99 22.37 0.22 -4.11 16 14 C -0.07 -1.89 9.69 22.25 0.22 -1.68 16 15 C 0.51 16.39 7.67 87.66 0.67 17.06 16 16 O -0.58 -23.43 15.09 -3.04 -0.05 -23.47 16 17 C -0.13 -4.24 4.25 29.85 0.13 -4.11 16 18 C -0.08 -3.70 4.44 30.59 0.14 -3.56 16 19 C 0.03 1.45 4.97 29.85 0.15 1.59 16 20 C -0.55 -32.78 9.11 25.60 0.23 -32.54 16 21 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 22 C 0.00 0.17 5.46 84.66 0.46 0.63 16 23 N -0.93 -56.70 13.29 21.45 0.28 -56.41 16 24 Si 0.96 45.88 29.54 68.60 2.03 47.91 16 25 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 26 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 27 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.11 0.62 7.89 -2.38 -0.02 0.60 16 30 H 0.08 1.05 6.44 -2.39 -0.02 1.03 16 31 H 0.07 1.59 7.36 -2.39 -0.02 1.57 16 32 H 0.13 1.22 7.83 -2.39 -0.02 1.21 16 33 H 0.16 0.83 8.06 -2.91 -0.02 0.81 16 34 H 0.17 0.72 6.30 -2.91 -0.02 0.70 16 35 H 0.14 0.43 7.66 -2.39 -0.02 0.42 16 36 H 0.14 0.59 7.66 -2.39 -0.02 0.57 16 37 H 0.44 -0.48 9.10 -74.05 -0.67 -1.15 16 38 H 0.12 3.10 8.06 -2.91 -0.02 3.08 16 39 H 0.11 3.38 7.58 -2.91 -0.02 3.35 16 40 H 0.10 3.05 8.11 -2.39 -0.02 3.03 16 41 H 0.11 3.13 7.40 -2.39 -0.02 3.11 16 42 H 0.04 1.92 8.10 -2.39 -0.02 1.90 16 43 H 0.04 1.72 8.10 -2.39 -0.02 1.70 16 44 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 45 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 46 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -88.13 394.64 4.70 -83.43 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: 0.33 Total: 4.37 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: 5.45 Total: -16.12 kcal Atomic # 7 Polarization: -69.93 SS G_CDS: -2.15 Total: -72.08 kcal Atomic # 8 Polarization: -46.56 SS G_CDS: -0.95 Total: -47.51 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -88.13 4.70 -83.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606161812.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.724 kcal (2) G-P(sol) polarization free energy of solvation -88.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds