Wall clock time and date at job start Tue Mar 31 2020 18:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35904 * 117.00088 * 2 1 4 4 C 1.38746 * 120.05585 * 359.97438 * 3 2 1 5 5 C 1.38121 * 119.94646 * 180.02562 * 4 3 2 6 6 C 1.38284 * 120.05456 * 0.02562 * 5 4 3 7 7 C 1.38248 * 120.11344 * 359.95202 * 6 5 4 8 8 C 1.50693 * 119.97350 * 180.02562 * 7 6 5 9 9 H 1.08996 * 109.47255 * 182.05547 * 8 7 6 10 10 C 1.50703 * 109.47260 * 62.05546 * 8 7 6 11 11 O 1.20822 * 119.99982 * 240.00283 * 10 8 7 12 12 O 1.34232 * 119.99862 * 60.00075 * 10 8 7 13 13 N 1.46504 * 109.47348 * 302.05626 * 8 7 6 14 14 C 1.46501 * 119.99771 * 59.91759 * 13 8 7 15 15 C 1.34767 * 120.00163 * 239.92381 * 13 8 7 16 16 O 1.21283 * 120.00249 * 359.97438 * 15 13 8 17 17 C 1.50700 * 119.99910 * 179.97438 * 15 13 8 18 18 C 1.53004 * 109.47084 * 179.97438 * 17 15 13 19 19 C 1.53004 * 109.47111 * 179.97438 * 18 17 15 20 20 C 1.50699 * 109.46969 * 180.02562 * 19 18 17 21 21 H 1.07999 * 120.00307 * 0.02562 * 20 19 18 22 22 C 1.37876 * 119.99762 * 180.02562 * 20 19 18 23 23 N 1.31518 * 119.99776 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 120.00273 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47242 * 89.99677 * 24 22 20 26 26 H 1.48501 * 109.46795 * 209.99890 * 24 22 20 27 27 H 1.48503 * 109.46789 * 329.99343 * 24 22 20 28 28 C 1.38159 * 120.05171 * 0.28082 * 7 6 5 29 29 H 1.08994 * 109.46921 * 60.00022 * 1 2 3 30 30 H 1.08999 * 109.47150 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47154 * 300.00002 * 1 2 3 32 32 H 1.08013 * 120.02742 * 0.02562 * 4 3 2 33 33 H 1.08005 * 119.97339 * 180.02562 * 5 4 3 34 34 H 1.07998 * 119.94388 * 179.97438 * 6 5 4 35 35 H 0.96698 * 117.00084 * 179.97438 * 12 10 8 36 36 H 1.09003 * 109.47469 * 274.31768 * 14 13 8 37 37 H 1.09007 * 109.47347 * 34.31255 * 14 13 8 38 38 H 1.09003 * 109.47133 * 154.31468 * 14 13 8 39 39 H 1.08994 * 109.47669 * 299.99366 * 17 15 13 40 40 H 1.09003 * 109.47196 * 59.99861 * 17 15 13 41 41 H 1.08997 * 109.47509 * 300.00200 * 18 17 15 42 42 H 1.09003 * 109.46741 * 60.00166 * 18 17 15 43 43 H 1.08997 * 109.47264 * 300.00554 * 19 18 17 44 44 H 1.09003 * 109.47016 * 60.00538 * 19 18 17 45 45 H 0.97003 * 119.99707 * 180.02562 * 23 22 20 46 46 H 1.08004 * 120.02891 * 179.73846 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 -0.0005 5 6 1.9209 3.6047 -0.0011 6 6 3.3019 3.6758 -0.0016 7 6 4.0560 2.5171 -0.0006 8 6 5.5608 2.5982 -0.0006 9 1 5.9788 1.5922 -0.0366 10 6 6.0265 3.2911 1.2540 11 8 6.6671 4.3127 1.1776 12 8 5.7297 2.7733 2.4563 13 7 6.0091 3.3555 -1.1719 14 6 5.5784 4.7437 -1.3553 15 6 6.8175 2.7751 -2.0806 16 8 7.1744 1.6260 -1.9286 17 6 7.2782 3.5540 -3.2856 18 6 8.1793 2.6701 -4.1503 19 6 8.6465 3.4606 -5.3741 20 6 9.5335 2.5898 -6.2261 21 1 9.7427 1.5739 -5.9251 22 6 10.0779 3.0899 -7.3899 23 7 10.8524 2.3301 -8.1332 24 14 9.7166 4.8473 -7.9103 25 1 10.7411 5.7547 -7.3342 26 1 9.7489 4.9413 -9.3920 27 1 8.3723 5.2426 -7.4185 28 6 3.4312 1.2849 -0.0049 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2127 2.3203 -0.0005 33 1 1.3340 4.5114 -0.0011 34 1 3.7922 4.6380 -0.0024 35 1 6.0504 3.2531 3.2322 36 1 4.6113 4.7607 -1.8579 37 1 5.4910 5.2286 -0.3829 38 1 6.3123 5.2747 -1.9615 39 1 6.4121 3.8694 -3.8673 40 1 7.8360 4.4318 -2.9594 41 1 9.0455 2.3549 -3.5685 42 1 7.6218 1.7920 -4.4765 43 1 7.7801 3.7754 -5.9558 44 1 9.2038 4.3389 -5.0483 45 1 11.2357 2.6821 -8.9518 46 1 4.0207 0.3799 -0.0084 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607307774.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:45 Heat of formation + Delta-G solvation = -157.731258 kcal Electronic energy + Delta-G solvation = -28823.154789 eV Core-core repulsion = 24677.568563 eV Total energy + Delta-G solvation = -4145.586226 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.25438 -40.94109 -40.64421 -38.71067 -37.41521 -36.45567 -36.15929 -34.23060 -33.12727 -31.53007 -30.29806 -29.30830 -28.00422 -27.41676 -25.54074 -23.71080 -23.44936 -22.48665 -21.66212 -20.34512 -19.46787 -18.91285 -18.78968 -18.27873 -17.94651 -17.16772 -17.13265 -16.91659 -16.71925 -16.63594 -16.39980 -16.13549 -15.36349 -15.03896 -14.79428 -14.65056 -14.58712 -14.36709 -13.94647 -13.85405 -13.66761 -13.56514 -13.45152 -13.24555 -12.91548 -12.67527 -12.62539 -12.50462 -12.33640 -12.10383 -11.87127 -11.83673 -11.77727 -11.69905 -11.48660 -11.31088 -10.94934 -10.73696 -10.00753 -9.93837 -9.23801 -8.26418 -6.31982 0.10511 0.39632 0.95101 1.29372 1.39753 1.43252 1.55354 1.58253 2.18274 2.35192 2.40454 2.78606 3.08751 3.35219 3.51941 3.79111 3.97245 4.04579 4.08486 4.12445 4.17283 4.22106 4.25370 4.28797 4.40748 4.48678 4.59752 4.66702 4.70101 4.74312 4.87925 4.91297 4.92209 4.95973 5.04652 5.17934 5.24923 5.37021 5.42443 5.45481 5.55726 5.60727 5.68631 5.68827 6.11684 6.32320 6.41192 6.76641 6.82727 6.99392 7.32248 8.91279 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013567 B = 0.002569 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.401893 B =10894.843712 C =11763.485161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.340 6.340 3 C 0.117 3.883 4 C -0.196 4.196 5 C -0.072 4.072 6 C -0.152 4.152 7 C -0.063 4.063 8 C 0.187 3.813 9 H 0.126 0.874 10 C 0.486 3.514 11 O -0.522 6.522 12 O -0.502 6.502 13 N -0.595 5.595 14 C 0.063 3.937 15 C 0.518 3.482 16 O -0.576 6.576 17 C -0.126 4.126 18 C -0.081 4.081 19 C -0.008 4.008 20 C -0.539 4.539 21 H 0.019 0.981 22 C -0.004 4.004 23 N -0.958 5.958 24 Si 0.961 3.039 25 H -0.265 1.265 26 H -0.286 1.286 27 H -0.234 1.234 28 C -0.147 4.147 29 H 0.066 0.934 30 H 0.114 0.886 31 H 0.070 0.930 32 H 0.156 0.844 33 H 0.161 0.839 34 H 0.142 0.858 35 H 0.432 0.568 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.122 0.878 40 H 0.118 0.882 41 H 0.036 0.964 42 H 0.038 0.962 43 H 0.033 0.967 44 H 0.029 0.971 45 H 0.266 0.734 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.055 7.611 24.091 37.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.254 6.254 3 C 0.071 3.929 4 C -0.215 4.215 5 C -0.090 4.090 6 C -0.170 4.170 7 C -0.064 4.064 8 C 0.081 3.919 9 H 0.144 0.856 10 C 0.327 3.673 11 O -0.411 6.411 12 O -0.315 6.315 13 N -0.328 5.328 14 C -0.078 4.078 15 C 0.309 3.691 16 O -0.455 6.455 17 C -0.165 4.165 18 C -0.119 4.119 19 C -0.046 4.046 20 C -0.577 4.577 21 H 0.038 0.962 22 C -0.200 4.200 23 N -0.598 5.598 24 Si 0.783 3.217 25 H -0.190 1.190 26 H -0.212 1.212 27 H -0.156 1.156 28 C -0.166 4.166 29 H 0.084 0.916 30 H 0.133 0.867 31 H 0.089 0.911 32 H 0.173 0.827 33 H 0.179 0.821 34 H 0.160 0.840 35 H 0.295 0.705 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.113 0.887 39 H 0.140 0.860 40 H 0.136 0.864 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.051 0.949 44 H 0.047 0.953 45 H 0.075 0.925 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -26.656 6.883 23.682 36.315 hybrid contribution 0.731 0.136 0.011 0.744 sum -25.925 7.019 23.693 35.816 Atomic orbital electron populations 1.23364 0.76153 1.05582 1.02511 1.86070 1.23737 1.26947 1.88622 1.19065 0.91881 0.85296 0.96617 1.21636 1.01468 0.91739 1.06663 1.21276 0.93819 0.98234 0.95651 1.21378 0.94842 0.97842 1.02945 1.19153 0.91685 0.93941 1.01605 1.19099 0.92809 0.97821 0.82155 0.85604 1.23347 0.75670 0.82509 0.85755 1.90714 1.37713 1.24909 1.87770 1.84497 1.73521 1.56869 1.16621 1.47669 1.49057 1.15160 1.20884 1.22394 1.02088 0.79256 1.04082 1.21390 0.76379 0.86902 0.84398 1.90681 1.57382 1.19941 1.77520 1.21771 1.02186 0.99509 0.93041 1.21068 0.97581 0.97650 0.95607 1.19538 0.95858 0.95619 0.93556 1.21551 1.29660 0.99243 1.07249 0.96245 1.26203 0.94146 1.03541 0.96085 1.70113 1.34705 1.39413 1.15609 0.85500 0.80892 0.78179 0.77091 1.19009 1.21245 1.15641 1.20301 0.92531 0.97801 1.05952 0.91561 0.86738 0.91101 0.82656 0.82142 0.83995 0.70524 0.89958 0.89636 0.88708 0.86037 0.86359 0.94523 0.94264 0.94911 0.95255 0.92530 0.85926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.34 -6.35 10.50 -92.47 -0.97 -7.32 16 3 C 0.12 2.22 6.69 22.51 0.15 2.37 16 4 C -0.20 -2.61 9.04 22.36 0.20 -2.41 16 5 C -0.07 -0.85 10.04 22.25 0.22 -0.63 16 6 C -0.15 -2.31 7.91 22.28 0.18 -2.13 16 7 C -0.06 -1.26 4.89 -19.88 -0.10 -1.36 16 8 C 0.19 4.40 2.88 43.50 0.13 4.53 16 9 H 0.13 3.46 6.63 -2.39 -0.02 3.45 16 10 C 0.49 10.35 7.08 71.24 0.50 10.85 16 11 O -0.52 -12.98 15.20 21.98 0.33 -12.65 16 12 O -0.50 -7.76 13.34 -51.43 -0.69 -8.45 16 13 N -0.59 -14.57 2.53 -831.03 -2.10 -16.67 16 14 C 0.06 1.04 7.83 127.77 1.00 2.04 16 15 C 0.52 16.60 7.67 87.66 0.67 17.27 16 16 O -0.58 -23.54 15.31 -3.04 -0.05 -23.58 16 17 C -0.13 -3.77 4.19 29.85 0.13 -3.64 16 18 C -0.08 -3.43 4.44 30.60 0.14 -3.29 16 19 C -0.01 -0.39 4.04 29.85 0.12 -0.27 16 20 C -0.54 -32.69 9.66 25.60 0.25 -32.44 16 21 H 0.02 1.32 7.99 -2.91 -0.02 1.30 16 22 C 0.00 -0.24 5.47 84.65 0.46 0.22 16 23 N -0.96 -62.34 13.96 21.45 0.30 -62.04 16 24 Si 0.96 44.17 27.47 68.60 1.88 46.05 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 26 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 27 H -0.23 -9.49 6.54 99.48 0.65 -8.84 16 28 C -0.15 -3.22 9.61 22.37 0.21 -3.01 16 29 H 0.07 0.46 7.66 -2.39 -0.02 0.44 16 30 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.41 7.66 -2.39 -0.02 0.39 16 32 H 0.16 1.17 6.30 -2.90 -0.02 1.15 16 33 H 0.16 0.85 8.06 -2.91 -0.02 0.83 16 34 H 0.14 1.75 5.23 -2.91 -0.02 1.73 16 35 H 0.43 2.56 9.10 -74.06 -0.67 1.89 16 36 H 0.08 1.05 7.16 -2.39 -0.02 1.03 16 37 H 0.09 1.34 5.10 -2.38 -0.01 1.33 16 38 H 0.09 1.40 6.29 -2.39 -0.01 1.39 16 39 H 0.12 2.94 8.11 -2.39 -0.02 2.93 16 40 H 0.12 2.97 7.41 -2.39 -0.02 2.95 16 41 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 42 H 0.04 1.80 8.10 -2.39 -0.02 1.78 16 43 H 0.03 1.44 7.20 -2.39 -0.02 1.42 16 44 H 0.03 1.28 7.57 -2.39 -0.02 1.26 16 45 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 46 H 0.12 2.88 7.95 -2.91 -0.02 2.86 16 Total: -1.00 -86.01 378.38 4.38 -81.63 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.29 Total: 13.66 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 5.38 Total: -10.62 kcal Atomic # 7 Polarization: -76.91 SS G_CDS: -1.80 Total: -78.71 kcal Atomic # 8 Polarization: -50.63 SS G_CDS: -1.37 Total: -52.00 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.88 Total: 46.05 kcal Total: -86.01 4.38 -81.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607307774.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.105 kcal (2) G-P(sol) polarization free energy of solvation -86.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds