Wall clock time and date at job start Tue Mar 31 2020 18:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35897 * 117.00082 * 2 1 4 4 C 1.38758 * 120.05467 * 0.29677 * 3 2 1 5 5 C 1.38119 * 119.94423 * 180.25485 * 4 3 2 6 6 C 1.38288 * 120.05366 * 359.46692 * 5 4 3 7 7 C 1.38240 * 120.11591 * 0.24016 * 6 5 4 8 8 C 1.50696 * 119.97662 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.47405 * 89.99580 * 8 7 6 10 10 H 1.09001 * 109.47100 * 55.00080 * 9 8 7 11 11 N 1.46496 * 109.46926 * 295.00460 * 9 8 7 12 12 C 1.34782 * 120.00008 * 155.00013 * 11 9 8 13 13 O 1.21280 * 119.99671 * 359.97438 * 12 11 9 14 14 C 1.50691 * 119.99939 * 179.97438 * 12 11 9 15 15 C 1.53005 * 109.46977 * 180.02562 * 14 12 11 16 16 C 1.53007 * 109.47004 * 180.02562 * 15 14 12 17 17 C 1.50697 * 109.46718 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00755 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99767 * 180.02562 * 17 16 15 20 20 N 1.31523 * 120.00062 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00295 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46889 * 59.99697 * 21 19 17 23 23 H 1.48493 * 109.47483 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46593 * 300.00025 * 21 19 17 25 25 C 1.50693 * 109.47130 * 174.99831 * 9 8 7 26 26 O 1.20829 * 119.99866 * 120.00055 * 25 9 8 27 27 O 1.34236 * 120.00310 * 300.00179 * 25 9 8 28 28 C 1.38172 * 120.05200 * 0.03764 * 7 6 5 29 29 H 1.09008 * 109.46899 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47080 * 300.00109 * 1 2 3 31 31 H 1.09002 * 109.47080 * 60.00398 * 1 2 3 32 32 H 1.07998 * 120.02572 * 359.97438 * 4 3 2 33 33 H 1.08002 * 119.97592 * 179.75244 * 5 4 3 34 34 H 1.08006 * 119.94478 * 180.25913 * 6 5 4 35 35 H 1.09005 * 109.47005 * 209.99445 * 8 7 6 36 36 H 1.08997 * 109.46936 * 329.99322 * 8 7 6 37 37 H 0.96995 * 120.00314 * 334.99417 * 11 9 8 38 38 H 1.09007 * 109.47527 * 299.99491 * 14 12 11 39 39 H 1.08996 * 109.47645 * 60.00051 * 14 12 11 40 40 H 1.08997 * 109.47181 * 299.99634 * 15 14 12 41 41 H 1.08999 * 109.47279 * 60.00451 * 15 14 12 42 42 H 1.08997 * 109.46843 * 299.99829 * 16 15 14 43 43 H 1.08993 * 109.46973 * 59.99747 * 16 15 14 44 44 H 0.97000 * 119.99693 * 180.02562 * 20 19 17 45 45 H 0.96703 * 116.99708 * 179.97438 * 27 25 9 46 46 H 1.07998 * 120.02832 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0062 5 6 1.9208 3.6047 0.0009 6 6 3.3018 3.6757 0.0005 7 6 4.0560 2.5171 0.0004 8 6 5.5607 2.5982 0.0006 9 6 6.0700 2.6256 1.4431 10 1 5.6812 1.7616 1.9821 11 7 5.6155 3.8546 2.0981 12 6 5.4862 3.8954 3.4391 13 8 5.7456 2.9145 4.1034 14 6 5.0192 5.1598 4.1129 15 6 4.9601 4.9396 5.6258 16 6 4.4854 6.2232 6.3099 17 6 4.4278 6.0064 7.8001 18 1 4.7018 5.0488 8.2176 19 6 4.0241 7.0303 8.6306 20 7 3.6898 8.1964 8.1222 21 14 3.9533 6.7619 10.4779 22 1 5.3053 6.4057 10.9784 23 1 3.4925 8.0076 11.1418 24 1 3.0065 5.6590 10.7818 25 6 7.5763 2.5827 1.4450 26 8 8.2058 3.4861 1.9425 27 8 8.2188 1.5408 0.8940 28 6 3.4311 1.2848 0.0000 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2128 2.3203 0.0107 33 1 1.3339 4.5114 0.0017 34 1 3.7922 4.6381 0.0005 35 1 5.9715 1.7290 -0.5133 36 1 5.8757 3.5064 -0.5132 37 1 5.4077 4.6390 1.5668 38 1 5.7157 5.9685 3.8908 39 1 4.0277 5.4230 3.7447 40 1 4.2639 4.1310 5.8483 41 1 5.9519 4.6768 5.9938 42 1 5.1812 7.0321 6.0874 43 1 3.4936 6.4856 5.9419 44 1 3.4062 8.9168 8.7066 45 1 9.1853 1.5581 0.9189 46 1 4.0206 0.3799 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607319493.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:57 Heat of formation + Delta-G solvation = -158.809494 kcal Electronic energy + Delta-G solvation = -28389.916169 eV Core-core repulsion = 24244.283188 eV Total energy + Delta-G solvation = -4145.632982 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.94973 -40.30026 -39.22471 -38.04536 -36.32417 -35.46528 -34.13580 -32.65727 -31.93856 -30.80337 -29.61524 -27.76272 -27.46050 -25.34312 -23.88339 -22.83687 -21.85892 -21.20838 -20.55925 -19.76581 -18.29767 -18.18859 -17.14035 -16.86003 -16.62248 -16.29115 -16.13156 -16.03353 -15.77712 -15.62203 -15.05557 -14.47787 -14.40409 -14.19993 -13.75364 -13.53443 -13.37192 -13.25529 -12.96472 -12.62422 -12.29693 -12.22691 -12.05977 -11.86549 -11.76417 -11.67394 -11.33844 -11.31147 -11.16457 -10.79491 -10.74815 -10.58866 -10.52343 -9.74601 -9.64199 -9.32403 -9.25640 -9.09979 -8.99473 -8.47602 -8.28465 -5.94517 -3.95706 0.96965 1.18145 2.02737 2.48207 2.94437 3.00361 3.29241 3.38904 3.41988 3.45975 3.46436 4.31517 4.41794 4.48964 4.52087 4.63412 4.76749 4.82375 4.83892 4.96136 4.97785 5.12325 5.13294 5.18463 5.27617 5.39865 5.41448 5.46699 5.72941 5.74768 5.76895 5.99627 6.12715 6.21411 6.27451 6.30233 6.32115 6.44184 6.77200 6.97040 7.09223 7.20230 7.47501 7.69828 7.74450 7.87917 8.06395 8.38696 8.50609 9.11118 9.67940 11.16994 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009399 B = 0.002762 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2978.450818 B =10136.647518 C =12119.834059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.128 3.872 4 C -0.207 4.207 5 C -0.075 4.075 6 C -0.145 4.145 7 C -0.046 4.046 8 C -0.081 4.081 9 C 0.164 3.836 10 H 0.129 0.871 11 N -0.717 5.717 12 C 0.523 3.477 13 O -0.533 6.533 14 C -0.136 4.136 15 C -0.095 4.095 16 C 0.021 3.979 17 C -0.518 4.518 18 H 0.055 0.945 19 C 0.056 3.944 20 N -0.898 5.898 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 C 0.464 3.536 26 O -0.498 6.498 27 O -0.517 6.517 28 C -0.144 4.144 29 H 0.100 0.900 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.405 0.595 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.260 0.740 45 H 0.410 0.590 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.022 -13.639 -26.038 29.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.083 3.917 4 C -0.226 4.226 5 C -0.093 4.093 6 C -0.164 4.164 7 C -0.046 4.046 8 C -0.119 4.119 9 C 0.056 3.944 10 H 0.146 0.854 11 N -0.372 5.372 12 C 0.311 3.689 13 O -0.407 6.407 14 C -0.176 4.176 15 C -0.133 4.133 16 C -0.016 4.016 17 C -0.556 4.556 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.538 5.538 21 Si 0.720 3.280 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.202 1.202 25 C 0.303 3.697 26 O -0.384 6.384 27 O -0.329 6.329 28 C -0.163 4.163 29 H 0.118 0.882 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.123 0.877 36 H 0.107 0.893 37 H 0.240 0.760 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.070 0.930 45 H 0.269 0.731 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.070 -14.120 -25.340 29.082 hybrid contribution 0.244 0.524 0.827 1.009 sum -1.826 -13.596 -24.513 28.090 Atomic orbital electron populations 1.23070 0.78257 1.04009 1.01451 1.86069 1.21490 1.26917 1.88670 1.18983 0.92269 0.84233 0.96216 1.21277 1.00153 0.92470 1.08668 1.20951 0.94571 0.97149 0.96633 1.20942 0.93857 0.97798 1.03754 1.19346 0.94300 0.92608 0.98387 1.20825 0.92059 1.05404 0.93571 1.20296 0.86037 0.92447 0.95618 0.85394 1.45912 1.69225 1.14156 1.07912 1.21341 0.75521 0.91100 0.80896 1.90679 1.49124 1.37157 1.63783 1.21834 1.02450 0.93923 0.99350 1.21454 1.01589 1.00924 0.89327 1.19118 0.96261 0.91325 0.94858 1.21242 1.44272 0.98066 0.92034 0.92648 1.25016 0.95482 0.95226 0.98761 1.69958 1.45838 1.02853 1.35145 0.86656 0.78498 0.77320 0.85533 1.20237 1.21339 1.20233 1.24137 0.92393 0.79046 0.74127 1.90757 1.68519 1.37727 1.41371 1.84509 1.27414 1.46542 1.74425 1.20273 0.91453 0.98137 1.06420 0.88210 0.92435 0.92680 0.85486 0.85452 0.85782 0.87719 0.89306 0.75954 0.89076 0.89175 0.92710 0.92693 0.96584 0.96601 0.93043 0.73140 0.84986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.12 10.50 -19.42 -0.20 -3.32 16 3 C 0.13 1.29 6.69 -39.22 -0.26 1.03 16 4 C -0.21 -1.86 9.04 -39.43 -0.36 -2.21 16 5 C -0.07 -0.64 10.04 -39.61 -0.40 -1.03 16 6 C -0.15 -1.20 9.09 -39.56 -0.36 -1.55 16 7 C -0.05 -0.39 4.95 -104.65 -0.52 -0.91 16 8 C -0.08 -0.57 4.85 -27.88 -0.14 -0.71 16 9 C 0.16 1.73 2.47 -69.09 -0.17 1.56 16 10 H 0.13 1.53 7.58 -51.93 -0.39 1.13 16 11 N -0.72 -8.58 4.06 -54.94 -0.22 -8.80 16 12 C 0.52 8.67 7.66 -10.99 -0.08 8.59 16 13 O -0.53 -10.91 15.64 5.56 0.09 -10.83 16 14 C -0.14 -2.32 5.70 -27.88 -0.16 -2.48 16 15 C -0.09 -2.11 4.44 -26.72 -0.12 -2.23 16 16 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 17 C -0.52 -15.25 9.11 -34.44 -0.31 -15.57 16 18 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 20 N -0.90 -27.40 13.29 55.43 0.74 -26.67 16 21 Si 0.89 22.33 29.54 -169.99 -5.02 17.31 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 25 C 0.46 5.44 7.66 36.00 0.28 5.71 16 26 O -0.50 -7.77 17.08 -18.75 -0.32 -8.09 16 27 O -0.52 -4.32 13.23 -39.27 -0.52 -4.84 16 28 C -0.14 -1.37 9.64 -39.43 -0.38 -1.75 16 29 H 0.10 0.43 8.14 -51.92 -0.42 0.00 16 30 H 0.06 0.34 7.65 -51.93 -0.40 -0.06 16 31 H 0.05 0.27 7.68 -51.93 -0.40 -0.13 16 32 H 0.13 0.90 6.30 -52.49 -0.33 0.57 16 33 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.12 0.78 7.57 -52.48 -0.40 0.38 16 35 H 0.10 0.60 7.94 -51.93 -0.41 0.19 16 36 H 0.09 0.49 8.08 -51.93 -0.42 0.07 16 37 H 0.40 3.68 7.82 -40.82 -0.32 3.36 16 38 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 40 H 0.05 1.26 8.10 -51.93 -0.42 0.84 16 41 H 0.05 1.29 8.10 -51.93 -0.42 0.87 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 45 H 0.41 1.88 9.10 45.56 0.41 2.29 16 46 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 395.03 15.07 5.95 5.95 Total: -1.00 -38.51 395.03 -7.73 -46.24 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -6.00 Total: 1.47 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: -2.22 Total: -8.43 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 0.51 Total: -35.46 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.96 Total: -27.08 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -38.51 -7.73 -46.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607319493.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.570 kcal (2) G-P(sol) polarization free energy of solvation -38.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds