Wall clock time and date at job start Tue Mar 31 2020 18:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35897 * 117.00082 * 2 1 4 4 C 1.38758 * 120.05467 * 0.29677 * 3 2 1 5 5 C 1.38119 * 119.94423 * 180.25485 * 4 3 2 6 6 C 1.38288 * 120.05366 * 359.46692 * 5 4 3 7 7 C 1.38240 * 120.11591 * 0.24016 * 6 5 4 8 8 C 1.50696 * 119.97662 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.47405 * 89.99580 * 8 7 6 10 10 H 1.09001 * 109.47100 * 55.00080 * 9 8 7 11 11 N 1.46496 * 109.46926 * 295.00460 * 9 8 7 12 12 C 1.34782 * 120.00008 * 155.00013 * 11 9 8 13 13 O 1.21280 * 119.99671 * 359.97438 * 12 11 9 14 14 C 1.50691 * 119.99939 * 179.97438 * 12 11 9 15 15 C 1.53005 * 109.46977 * 180.02562 * 14 12 11 16 16 C 1.53007 * 109.47004 * 180.02562 * 15 14 12 17 17 C 1.50697 * 109.46718 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00755 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99767 * 180.02562 * 17 16 15 20 20 N 1.31523 * 120.00062 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00295 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46889 * 59.99697 * 21 19 17 23 23 H 1.48493 * 109.47483 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46593 * 300.00025 * 21 19 17 25 25 C 1.50693 * 109.47130 * 174.99831 * 9 8 7 26 26 O 1.20829 * 119.99866 * 120.00055 * 25 9 8 27 27 O 1.34236 * 120.00310 * 300.00179 * 25 9 8 28 28 C 1.38172 * 120.05200 * 0.03764 * 7 6 5 29 29 H 1.09008 * 109.46899 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47080 * 300.00109 * 1 2 3 31 31 H 1.09002 * 109.47080 * 60.00398 * 1 2 3 32 32 H 1.07998 * 120.02572 * 359.97438 * 4 3 2 33 33 H 1.08002 * 119.97592 * 179.75244 * 5 4 3 34 34 H 1.08006 * 119.94478 * 180.25913 * 6 5 4 35 35 H 1.09005 * 109.47005 * 209.99445 * 8 7 6 36 36 H 1.08997 * 109.46936 * 329.99322 * 8 7 6 37 37 H 0.96995 * 120.00314 * 334.99417 * 11 9 8 38 38 H 1.09007 * 109.47527 * 299.99491 * 14 12 11 39 39 H 1.08996 * 109.47645 * 60.00051 * 14 12 11 40 40 H 1.08997 * 109.47181 * 299.99634 * 15 14 12 41 41 H 1.08999 * 109.47279 * 60.00451 * 15 14 12 42 42 H 1.08997 * 109.46843 * 299.99829 * 16 15 14 43 43 H 1.08993 * 109.46973 * 59.99747 * 16 15 14 44 44 H 0.97000 * 119.99693 * 180.02562 * 20 19 17 45 45 H 0.96703 * 116.99708 * 179.97438 * 27 25 9 46 46 H 1.07998 * 120.02832 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0062 5 6 1.9208 3.6047 0.0009 6 6 3.3018 3.6757 0.0005 7 6 4.0560 2.5171 0.0004 8 6 5.5607 2.5982 0.0006 9 6 6.0700 2.6256 1.4431 10 1 5.6812 1.7616 1.9821 11 7 5.6155 3.8546 2.0981 12 6 5.4862 3.8954 3.4391 13 8 5.7456 2.9145 4.1034 14 6 5.0192 5.1598 4.1129 15 6 4.9601 4.9396 5.6258 16 6 4.4854 6.2232 6.3099 17 6 4.4278 6.0064 7.8001 18 1 4.7018 5.0488 8.2176 19 6 4.0241 7.0303 8.6306 20 7 3.6898 8.1964 8.1222 21 14 3.9533 6.7619 10.4779 22 1 5.3053 6.4057 10.9784 23 1 3.4925 8.0076 11.1418 24 1 3.0065 5.6590 10.7818 25 6 7.5763 2.5827 1.4450 26 8 8.2058 3.4861 1.9425 27 8 8.2188 1.5408 0.8940 28 6 3.4311 1.2848 0.0000 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2128 2.3203 0.0107 33 1 1.3339 4.5114 0.0017 34 1 3.7922 4.6381 0.0005 35 1 5.9715 1.7290 -0.5133 36 1 5.8757 3.5064 -0.5132 37 1 5.4077 4.6390 1.5668 38 1 5.7157 5.9685 3.8908 39 1 4.0277 5.4230 3.7447 40 1 4.2639 4.1310 5.8483 41 1 5.9519 4.6768 5.9938 42 1 5.1812 7.0321 6.0874 43 1 3.4936 6.4856 5.9419 44 1 3.4062 8.9168 8.7066 45 1 9.1853 1.5581 0.9189 46 1 4.0206 0.3799 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607319493.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:56 Heat of formation + Delta-G solvation = -185.382835 kcal Electronic energy + Delta-G solvation = -28391.068476 eV Core-core repulsion = 24244.283188 eV Total energy + Delta-G solvation = -4146.785288 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.87383 -40.98002 -40.41227 -38.73307 -37.20553 -36.48147 -36.03218 -34.09027 -33.37976 -31.47377 -30.60688 -29.31830 -28.11279 -26.20572 -25.67020 -23.48607 -23.01532 -22.09889 -21.76091 -21.26894 -19.18248 -18.92839 -18.54862 -17.97578 -17.87778 -17.27685 -16.91408 -16.83212 -16.65656 -16.61466 -16.46626 -16.36610 -15.17594 -14.96362 -14.85138 -14.77244 -14.36415 -14.25460 -14.05231 -13.85882 -13.71044 -13.22080 -13.11118 -12.83490 -12.69833 -12.61256 -12.54907 -12.52810 -12.47313 -12.41532 -11.95818 -11.86139 -11.64335 -11.55934 -11.47903 -11.28861 -10.85775 -10.53984 -10.39041 -9.77606 -9.12285 -8.20016 -6.29943 0.31966 0.53063 1.11939 1.39008 1.42121 1.43937 1.50206 1.88405 2.30153 2.40931 2.43065 2.79936 3.12744 3.64581 3.70997 3.89916 3.90797 4.01148 4.18898 4.21005 4.26135 4.29773 4.32446 4.38397 4.41360 4.46201 4.59211 4.72710 4.78212 4.83001 4.86780 4.97099 5.09985 5.12361 5.16886 5.25039 5.37521 5.52652 5.53712 5.56141 5.64105 5.75802 5.85207 5.86857 6.27522 6.42390 6.47573 6.84973 6.91848 7.17858 7.38423 8.91343 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009399 B = 0.002762 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2978.450818 B =10136.647518 C =12119.834059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.339 6.339 3 C 0.107 3.893 4 C -0.216 4.216 5 C -0.085 4.085 6 C -0.151 4.151 7 C -0.050 4.050 8 C -0.068 4.068 9 C 0.163 3.837 10 H 0.115 0.885 11 N -0.698 5.698 12 C 0.525 3.475 13 O -0.579 6.579 14 C -0.129 4.129 15 C -0.082 4.082 16 C 0.028 3.972 17 C -0.550 4.550 18 H 0.050 0.950 19 C 0.004 3.996 20 N -0.928 5.928 21 Si 0.961 3.039 22 H -0.271 1.271 23 H -0.277 1.277 24 H -0.268 1.268 25 C 0.470 3.530 26 O -0.542 6.542 27 O -0.504 6.504 28 C -0.161 4.161 29 H 0.116 0.884 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.140 0.860 33 H 0.144 0.856 34 H 0.146 0.854 35 H 0.123 0.877 36 H 0.112 0.888 37 H 0.421 0.579 38 H 0.106 0.894 39 H 0.115 0.885 40 H 0.042 0.958 41 H 0.035 0.965 42 H -0.001 1.001 43 H 0.004 0.996 44 H 0.265 0.735 45 H 0.428 0.572 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.143 -13.644 -27.164 30.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.253 6.253 3 C 0.062 3.938 4 C -0.235 4.235 5 C -0.103 4.103 6 C -0.169 4.169 7 C -0.050 4.050 8 C -0.106 4.106 9 C 0.055 3.945 10 H 0.133 0.867 11 N -0.352 5.352 12 C 0.314 3.686 13 O -0.458 6.458 14 C -0.169 4.169 15 C -0.120 4.120 16 C -0.009 4.009 17 C -0.588 4.588 18 H 0.068 0.932 19 C -0.194 4.194 20 N -0.568 5.568 21 Si 0.785 3.215 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.193 1.193 25 C 0.312 3.688 26 O -0.431 6.431 27 O -0.317 6.317 28 C -0.179 4.179 29 H 0.135 0.865 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.158 0.842 33 H 0.162 0.838 34 H 0.164 0.836 35 H 0.141 0.859 36 H 0.130 0.870 37 H 0.260 0.740 38 H 0.124 0.876 39 H 0.133 0.867 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.018 0.982 43 H 0.023 0.977 44 H 0.074 0.926 45 H 0.290 0.710 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.186 -14.135 -26.538 30.147 hybrid contribution 0.272 0.475 1.103 1.231 sum -1.914 -13.660 -25.435 28.934 Atomic orbital electron populations 1.23293 0.76714 1.05383 1.02041 1.86033 1.23244 1.27199 1.88831 1.19254 0.92815 0.84695 0.97031 1.21520 1.00983 0.92484 1.08504 1.21264 0.95134 0.97599 0.96337 1.21277 0.93969 0.98670 1.02999 1.19484 0.94966 0.92357 0.98216 1.20833 0.91072 1.07483 0.91178 1.20448 0.85698 0.90987 0.97375 0.86745 1.45636 1.67647 1.15461 1.06492 1.21112 0.75217 0.90048 0.82265 1.90664 1.51477 1.38483 1.65165 1.21672 1.04514 0.94927 0.95757 1.21158 0.99727 0.98207 0.92918 1.18995 0.95183 0.92647 0.94081 1.21665 1.44960 0.98190 0.93952 0.93193 1.25895 0.94759 0.94830 1.03897 1.70060 1.46127 1.03605 1.37051 0.85571 0.78821 0.77763 0.79331 1.19609 1.20219 1.19337 1.24206 0.92684 0.78795 0.73151 1.90751 1.69436 1.39477 1.43455 1.84464 1.29115 1.44834 1.73284 1.20515 0.91649 0.98909 1.06841 0.86547 0.92405 0.91474 0.84241 0.83803 0.83611 0.85919 0.86971 0.73996 0.87604 0.86662 0.93938 0.94618 0.98220 0.97750 0.92623 0.70972 0.84673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.35 16 2 O -0.34 -6.61 10.50 -92.39 -0.97 -7.58 16 3 C 0.11 2.11 6.69 22.51 0.15 2.26 16 4 C -0.22 -3.69 9.04 22.37 0.20 -3.49 16 5 C -0.09 -1.31 10.04 22.25 0.22 -1.08 16 6 C -0.15 -2.14 9.09 22.28 0.20 -1.94 16 7 C -0.05 -0.75 4.95 -19.88 -0.10 -0.85 16 8 C -0.07 -0.78 4.85 29.85 0.14 -0.64 16 9 C 0.16 3.17 2.47 44.24 0.11 3.28 16 10 H 0.11 2.66 7.58 -2.39 -0.02 2.64 16 11 N -0.70 -15.54 4.06 -446.11 -1.81 -17.35 16 12 C 0.52 17.11 7.66 87.65 0.67 17.78 16 13 O -0.58 -24.04 15.64 -3.03 -0.05 -24.09 16 14 C -0.13 -4.32 5.70 29.85 0.17 -4.15 16 15 C -0.08 -3.72 4.44 30.60 0.14 -3.59 16 16 C 0.03 1.51 4.97 29.85 0.15 1.66 16 17 C -0.55 -32.93 9.11 25.60 0.23 -32.70 16 18 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 19 C 0.00 0.25 5.46 84.65 0.46 0.71 16 20 N -0.93 -56.84 13.29 21.45 0.28 -56.56 16 21 Si 0.96 45.76 29.54 68.60 2.03 47.79 16 22 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 24 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 25 C 0.47 10.32 7.66 71.23 0.55 10.87 16 26 O -0.54 -16.41 17.08 21.95 0.37 -16.04 16 27 O -0.50 -7.35 13.23 -51.47 -0.68 -8.03 16 28 C -0.16 -2.93 9.64 22.37 0.22 -2.72 16 29 H 0.12 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.06 0.65 7.65 -2.39 -0.02 0.63 16 31 H 0.07 0.59 7.68 -2.39 -0.02 0.58 16 32 H 0.14 1.86 6.30 -2.91 -0.02 1.84 16 33 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 34 H 0.15 1.33 7.57 -2.91 -0.02 1.31 16 35 H 0.12 1.03 7.94 -2.38 -0.02 1.02 16 36 H 0.11 0.82 8.08 -2.39 -0.02 0.80 16 37 H 0.42 6.52 7.82 -92.71 -0.73 5.79 16 38 H 0.11 3.24 8.14 -2.38 -0.02 3.23 16 39 H 0.12 3.27 8.14 -2.39 -0.02 3.25 16 40 H 0.04 2.00 8.10 -2.39 -0.02 1.98 16 41 H 0.03 1.72 8.10 -2.39 -0.02 1.70 16 42 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 43 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 44 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 45 H 0.43 2.99 9.10 -74.06 -0.67 2.31 16 46 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -84.71 395.03 3.42 -81.29 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -0.39 Total: 13.80 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: 4.63 Total: -13.24 kcal Atomic # 7 Polarization: -72.38 SS G_CDS: -1.53 Total: -73.91 kcal Atomic # 8 Polarization: -54.41 SS G_CDS: -1.32 Total: -55.73 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -84.71 3.42 -81.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607319493.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.092 kcal (2) G-P(sol) polarization free energy of solvation -84.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds