Wall clock time and date at job start Tue Mar 31 2020 18:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30989 * 1 3 3 C 1.50700 * 119.99997 * 2 1 4 4 N 1.46908 * 109.47088 * 123.23487 * 3 2 1 5 5 C 1.46897 * 110.99969 * 299.43610 * 4 3 2 6 6 C 1.50700 * 109.47252 * 288.66921 * 5 4 3 7 7 H 1.08003 * 119.99509 * 4.56264 * 6 5 4 8 8 C 1.37869 * 120.00219 * 184.57005 * 6 5 4 9 9 N 1.31513 * 120.00182 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 120.00005 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47199 * 89.99931 * 10 8 6 12 12 H 1.48499 * 109.47128 * 209.99875 * 10 8 6 13 13 H 1.48493 * 109.47317 * 329.99836 * 10 8 6 14 14 C 1.46901 * 110.99767 * 63.38530 * 4 3 2 15 15 H 1.08999 * 109.47534 * 297.91259 * 14 4 3 16 16 C 1.50700 * 109.47088 * 57.91038 * 14 4 3 17 17 O 1.20828 * 119.99933 * 27.88936 * 16 14 4 18 18 O 1.34231 * 119.99969 * 207.89294 * 16 14 4 19 19 C 1.50700 * 109.47420 * 177.91042 * 14 4 3 20 20 C 1.38182 * 119.93973 * 313.75178 * 19 14 4 21 21 C 1.38771 * 120.04886 * 179.77026 * 20 19 14 22 22 O 1.35900 * 120.02600 * 180.23272 * 21 20 19 23 23 C 1.42905 * 117.00147 * 180.29146 * 22 21 20 24 24 C 1.38631 * 119.94895 * 0.51965 * 21 20 19 25 25 C 1.38639 * 119.89004 * 359.73447 * 24 21 20 26 26 O 1.35901 * 120.02874 * 179.97438 * 25 24 21 27 27 C 1.42901 * 116.99713 * 0.02562 * 26 25 24 28 28 C 1.38171 * 119.94947 * 134.02103 * 19 14 4 29 29 H 1.08002 * 120.00275 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.00047 * 359.97438 * 1 2 3 31 31 H 1.08003 * 120.00245 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.47542 * 243.23399 * 3 2 1 33 33 H 1.08996 * 109.47130 * 3.23863 * 3 2 1 34 34 H 1.09003 * 109.47614 * 48.66782 * 5 4 3 35 35 H 1.09000 * 109.47379 * 168.66791 * 5 4 3 36 36 H 0.96999 * 120.00193 * 179.97438 * 9 8 6 37 37 H 0.96709 * 116.99900 * 180.02562 * 18 16 14 38 38 H 1.07998 * 119.97259 * 359.97438 * 20 19 14 39 39 H 1.09003 * 109.46754 * 59.99501 * 23 22 21 40 40 H 1.08996 * 109.46712 * 179.97438 * 23 22 21 41 41 H 1.08994 * 109.46919 * 300.00155 * 23 22 21 42 42 H 1.07997 * 120.05681 * 179.75175 * 24 21 20 43 43 H 1.08998 * 109.47115 * 300.00228 * 27 26 25 44 44 H 1.08998 * 109.47433 * 60.00082 * 27 26 25 45 45 H 1.08999 * 109.46628 * 180.02562 * 27 26 25 46 46 H 1.08004 * 119.97062 * 359.97438 * 28 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9656 1.3496 1.1585 5 6 2.2127 1.2532 2.4162 6 6 1.4545 2.5349 2.6473 7 1 1.4656 3.3116 1.8969 8 6 0.7468 2.7160 3.8165 9 7 0.0856 3.8347 4.0184 10 14 0.7272 1.3723 5.1141 11 1 1.8558 1.5783 6.0570 12 1 -0.5561 1.4227 5.8595 13 1 0.8664 0.0479 4.4573 14 6 3.9847 0.2950 1.0729 15 1 3.4995 -0.6810 1.0839 16 6 4.7653 0.4534 -0.2064 17 8 4.8866 1.5455 -0.7088 18 8 5.3256 -0.6189 -0.7879 19 6 4.9205 0.4040 2.2491 20 6 5.4315 1.6355 2.6120 21 6 6.2897 1.7391 3.6976 22 8 6.7883 2.9512 4.0570 23 6 7.6708 2.9825 5.1805 24 6 6.6428 0.6045 4.4115 25 6 6.1329 -0.6307 4.0422 26 8 6.4775 -1.7449 4.7397 27 6 7.3691 -1.5699 5.8427 28 6 5.2706 -0.7283 2.9593 29 1 -0.5401 -0.9353 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8499 -0.9353 -0.0004 32 1 2.6459 1.3884 -0.9175 33 1 1.3565 2.1327 0.0581 34 1 1.5106 0.4215 2.3566 35 1 2.9044 1.0863 3.2419 36 1 -0.4126 3.9620 4.8409 37 1 5.8169 -0.4675 -1.6070 38 1 5.1602 2.5184 2.0524 39 1 8.5399 2.3568 4.9773 40 1 7.9953 4.0076 5.3592 41 1 7.1508 2.6067 6.0616 42 1 7.3137 0.6826 5.2542 43 1 8.3078 -1.1448 5.4872 44 1 6.9181 -0.8961 6.5712 45 1 7.5619 -2.5352 6.3107 46 1 4.8729 -1.6903 2.6712 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609356750.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:07 Heat of formation + Delta-G solvation = -92.134042 kcal Electronic energy + Delta-G solvation = -30469.909548 eV Core-core repulsion = 26327.167831 eV Total energy + Delta-G solvation = -4142.741717 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.77744 -40.01664 -38.73522 -37.83135 -36.28839 -35.75069 -32.92134 -32.51302 -30.65093 -30.17535 -28.56663 -27.94545 -26.59640 -26.50080 -24.42418 -22.35011 -22.06617 -21.27366 -20.39368 -19.08326 -18.21280 -17.82317 -16.93751 -16.82300 -16.18516 -15.96469 -15.93959 -15.75007 -15.60499 -15.45384 -14.75329 -14.67152 -14.52845 -14.09407 -13.97448 -13.26765 -13.04339 -12.97060 -12.67639 -12.44882 -12.33853 -12.12501 -11.88615 -11.60056 -11.49172 -11.42758 -11.18023 -11.04701 -11.02241 -10.85905 -10.63214 -10.58008 -10.51931 -10.08286 -9.84897 -9.30736 -8.87990 -8.55962 -8.44675 -7.80496 -7.53708 -6.01128 -3.97103 1.32338 1.66561 2.43447 2.72482 3.07037 3.24808 3.31015 3.35603 3.37923 3.41245 3.87259 4.45486 4.64845 4.77062 4.87178 4.97241 4.99680 5.10846 5.12455 5.26203 5.26690 5.29950 5.33339 5.33730 5.40448 5.43522 5.48076 5.63625 5.70589 5.88114 6.01753 6.29433 6.30367 6.45155 6.55458 6.60546 6.68550 6.77998 6.85527 6.93009 7.05030 7.20744 7.22002 7.52836 7.60522 7.78099 7.85608 8.15856 8.65031 9.08335 9.60524 11.11915 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.008338 B = 0.005689 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3357.373420 B = 4920.980052 C = 6368.694218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.196 4.196 3 C 0.082 3.918 4 N -0.493 5.493 5 C 0.162 3.838 6 C -0.499 4.499 7 H 0.082 0.918 8 C 0.073 3.927 9 N -0.899 5.899 10 Si 0.865 3.135 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.266 1.266 14 C 0.133 3.867 15 H 0.077 0.923 16 C 0.487 3.513 17 O -0.485 6.485 18 O -0.520 6.520 19 C -0.005 4.005 20 C -0.133 4.133 21 C 0.160 3.840 22 O -0.307 6.307 23 C 0.028 3.972 24 C -0.292 4.292 25 C 0.154 3.846 26 O -0.315 6.315 27 C 0.028 3.972 28 C -0.172 4.172 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.000 1.000 35 H 0.030 0.970 36 H 0.263 0.737 37 H 0.405 0.595 38 H 0.151 0.849 39 H 0.051 0.949 40 H 0.100 0.900 41 H 0.053 0.947 42 H 0.132 0.868 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.098 0.902 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.915 -10.910 -1.053 18.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.216 4.216 3 C -0.045 4.045 4 N -0.217 5.217 5 C 0.037 3.963 6 C -0.537 4.537 7 H 0.100 0.900 8 C -0.128 4.128 9 N -0.538 5.538 10 Si 0.693 3.307 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.191 1.191 14 C 0.023 3.977 15 H 0.095 0.905 16 C 0.326 3.674 17 O -0.370 6.370 18 O -0.331 6.331 19 C -0.006 4.006 20 C -0.151 4.151 21 C 0.114 3.886 22 O -0.220 6.220 23 C -0.067 4.067 24 C -0.311 4.311 25 C 0.109 3.891 26 O -0.228 6.228 27 C -0.067 4.067 28 C -0.191 4.191 29 H 0.106 0.894 30 H 0.121 0.879 31 H 0.115 0.885 32 H 0.089 0.911 33 H 0.118 0.882 34 H 0.018 0.982 35 H 0.048 0.952 36 H 0.073 0.927 37 H 0.264 0.736 38 H 0.169 0.831 39 H 0.069 0.931 40 H 0.118 0.882 41 H 0.072 0.928 42 H 0.150 0.850 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.117 0.883 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 14.785 -10.098 -0.799 17.922 hybrid contribution 0.087 -1.371 0.889 1.636 sum 14.872 -11.469 0.090 18.781 Atomic orbital electron populations 1.23814 0.95939 1.01608 0.99347 1.23599 0.97082 0.99548 1.01336 1.21452 0.95035 0.95106 0.92956 1.62263 1.13870 1.40980 1.04614 1.20302 0.92203 0.98149 0.85606 1.20888 1.27939 1.00630 1.04240 0.89963 1.24787 0.95269 0.95110 0.97663 1.69879 1.32795 1.24817 1.26306 0.87003 0.77569 0.83458 0.82704 1.20264 1.21243 1.19106 1.19982 0.92641 0.98023 0.87016 0.90498 1.23207 0.76931 0.81746 0.85472 1.90714 1.56045 1.27155 1.63070 1.84553 1.65749 1.40140 1.42691 1.18713 0.95077 0.92216 0.94591 1.20361 0.98186 0.99023 0.97576 1.18680 0.92959 0.83532 0.93382 1.86155 1.60719 1.27346 1.47757 1.23032 0.92313 1.03720 0.87678 1.21221 1.10869 0.92612 1.06401 1.18472 0.94163 0.84794 0.91646 1.86064 1.62898 1.30673 1.43190 1.23022 0.92417 1.03529 0.87751 1.20089 1.02761 0.99159 0.97107 0.89416 0.87868 0.88548 0.91128 0.88217 0.98212 0.95199 0.92748 0.73630 0.83148 0.93062 0.88192 0.92796 0.85036 0.92863 0.92733 0.88323 0.84947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.77 14.31 29.02 0.42 -2.36 16 2 C -0.20 -3.34 7.42 -36.02 -0.27 -3.60 16 3 C 0.08 1.57 5.29 -4.97 -0.03 1.54 16 4 N -0.49 -10.23 3.77 -232.31 -0.88 -11.11 16 5 C 0.16 3.87 3.39 -4.98 -0.02 3.85 16 6 C -0.50 -13.94 9.20 -34.44 -0.32 -14.25 16 7 H 0.08 2.51 7.55 -52.48 -0.40 2.12 16 8 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 9 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 10 Si 0.87 21.75 27.38 -169.99 -4.65 17.10 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 13 H -0.27 -6.46 6.67 56.52 0.38 -6.08 16 14 C 0.13 2.36 1.88 -70.02 -0.13 2.23 16 15 H 0.08 1.26 6.44 -51.93 -0.33 0.93 16 16 C 0.49 7.91 6.34 36.01 0.23 8.14 16 17 O -0.49 -9.11 16.18 -18.75 -0.30 -9.41 16 18 O -0.52 -6.43 13.42 -39.26 -0.53 -6.95 16 19 C -0.01 -0.09 3.32 -104.67 -0.35 -0.44 16 20 C -0.13 -2.52 8.72 -39.41 -0.34 -2.86 16 21 C 0.16 2.75 6.68 -39.24 -0.26 2.48 16 22 O -0.31 -4.98 10.50 -19.42 -0.20 -5.18 16 23 C 0.03 0.30 9.81 101.05 0.99 1.29 16 24 C -0.29 -4.33 8.02 -39.29 -0.32 -4.64 16 25 C 0.15 2.38 6.68 -39.24 -0.26 2.12 16 26 O -0.31 -4.28 10.50 -19.43 -0.20 -4.49 16 27 C 0.03 0.26 9.81 101.05 0.99 1.25 16 28 C -0.17 -2.80 9.60 -39.41 -0.38 -3.18 16 29 H 0.09 1.25 8.06 -52.49 -0.42 0.82 16 30 H 0.10 1.77 7.84 -52.49 -0.41 1.36 16 31 H 0.10 1.49 6.97 -52.48 -0.37 1.13 16 32 H 0.07 1.28 6.14 -51.93 -0.32 0.97 16 33 H 0.10 2.10 6.77 -51.93 -0.35 1.75 16 34 H 0.00 0.01 6.12 -51.93 -0.32 -0.31 16 35 H 0.03 0.74 5.47 -51.93 -0.28 0.45 16 36 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 37 H 0.41 3.09 9.10 45.56 0.41 3.51 16 38 H 0.15 3.16 7.91 -52.49 -0.42 2.74 16 39 H 0.05 0.45 7.66 -51.93 -0.40 0.06 16 40 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 42 H 0.13 1.54 4.54 -52.49 -0.24 1.30 16 43 H 0.05 0.41 7.66 -51.93 -0.40 0.02 16 44 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 45 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.13 1.93 7.99 -52.48 -0.42 1.51 16 LS Contribution 378.69 15.07 5.71 5.71 Total: -1.00 -34.43 378.69 -5.88 -40.32 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -5.46 Total: 7.13 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: -0.14 Total: -6.43 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: -0.10 Total: -37.79 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -1.24 Total: -26.04 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.65 Total: 17.10 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.43 -5.88 -40.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609356750.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.816 kcal (2) G-P(sol) polarization free energy of solvation -34.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds