Wall clock time and date at job start Tue Mar 31 2020 18:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30989 * 1 3 3 C 1.50700 * 119.99997 * 2 1 4 4 N 1.46908 * 109.47088 * 123.23487 * 3 2 1 5 5 C 1.46897 * 110.99969 * 299.43610 * 4 3 2 6 6 C 1.50700 * 109.47252 * 288.66921 * 5 4 3 7 7 H 1.08003 * 119.99509 * 4.56264 * 6 5 4 8 8 C 1.37869 * 120.00219 * 184.57005 * 6 5 4 9 9 N 1.31513 * 120.00182 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 120.00005 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47199 * 89.99931 * 10 8 6 12 12 H 1.48499 * 109.47128 * 209.99875 * 10 8 6 13 13 H 1.48493 * 109.47317 * 329.99836 * 10 8 6 14 14 C 1.46901 * 110.99767 * 63.38530 * 4 3 2 15 15 H 1.08999 * 109.47534 * 297.91259 * 14 4 3 16 16 C 1.50700 * 109.47088 * 57.91038 * 14 4 3 17 17 O 1.20828 * 119.99933 * 27.88936 * 16 14 4 18 18 O 1.34231 * 119.99969 * 207.89294 * 16 14 4 19 19 C 1.50700 * 109.47420 * 177.91042 * 14 4 3 20 20 C 1.38182 * 119.93973 * 313.75178 * 19 14 4 21 21 C 1.38771 * 120.04886 * 179.77026 * 20 19 14 22 22 O 1.35900 * 120.02600 * 180.23272 * 21 20 19 23 23 C 1.42905 * 117.00147 * 180.29146 * 22 21 20 24 24 C 1.38631 * 119.94895 * 0.51965 * 21 20 19 25 25 C 1.38639 * 119.89004 * 359.73447 * 24 21 20 26 26 O 1.35901 * 120.02874 * 179.97438 * 25 24 21 27 27 C 1.42901 * 116.99713 * 0.02562 * 26 25 24 28 28 C 1.38171 * 119.94947 * 134.02103 * 19 14 4 29 29 H 1.08002 * 120.00275 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.00047 * 359.97438 * 1 2 3 31 31 H 1.08003 * 120.00245 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.47542 * 243.23399 * 3 2 1 33 33 H 1.08996 * 109.47130 * 3.23863 * 3 2 1 34 34 H 1.09003 * 109.47614 * 48.66782 * 5 4 3 35 35 H 1.09000 * 109.47379 * 168.66791 * 5 4 3 36 36 H 0.96999 * 120.00193 * 179.97438 * 9 8 6 37 37 H 0.96709 * 116.99900 * 180.02562 * 18 16 14 38 38 H 1.07998 * 119.97259 * 359.97438 * 20 19 14 39 39 H 1.09003 * 109.46754 * 59.99501 * 23 22 21 40 40 H 1.08996 * 109.46712 * 179.97438 * 23 22 21 41 41 H 1.08994 * 109.46919 * 300.00155 * 23 22 21 42 42 H 1.07997 * 120.05681 * 179.75175 * 24 21 20 43 43 H 1.08998 * 109.47115 * 300.00228 * 27 26 25 44 44 H 1.08998 * 109.47433 * 60.00082 * 27 26 25 45 45 H 1.08999 * 109.46628 * 180.02562 * 27 26 25 46 46 H 1.08004 * 119.97062 * 359.97438 * 28 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9656 1.3496 1.1585 5 6 2.2127 1.2532 2.4162 6 6 1.4545 2.5349 2.6473 7 1 1.4656 3.3116 1.8969 8 6 0.7468 2.7160 3.8165 9 7 0.0856 3.8347 4.0184 10 14 0.7272 1.3723 5.1141 11 1 1.8558 1.5783 6.0570 12 1 -0.5561 1.4227 5.8595 13 1 0.8664 0.0479 4.4573 14 6 3.9847 0.2950 1.0729 15 1 3.4995 -0.6810 1.0839 16 6 4.7653 0.4534 -0.2064 17 8 4.8866 1.5455 -0.7088 18 8 5.3256 -0.6189 -0.7879 19 6 4.9205 0.4040 2.2491 20 6 5.4315 1.6355 2.6120 21 6 6.2897 1.7391 3.6976 22 8 6.7883 2.9512 4.0570 23 6 7.6708 2.9825 5.1805 24 6 6.6428 0.6045 4.4115 25 6 6.1329 -0.6307 4.0422 26 8 6.4775 -1.7449 4.7397 27 6 7.3691 -1.5699 5.8427 28 6 5.2706 -0.7283 2.9593 29 1 -0.5401 -0.9353 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8499 -0.9353 -0.0004 32 1 2.6459 1.3884 -0.9175 33 1 1.3565 2.1327 0.0581 34 1 1.5106 0.4215 2.3566 35 1 2.9044 1.0863 3.2419 36 1 -0.4126 3.9620 4.8409 37 1 5.8169 -0.4675 -1.6070 38 1 5.1602 2.5184 2.0524 39 1 8.5399 2.3568 4.9773 40 1 7.9953 4.0076 5.3592 41 1 7.1508 2.6067 6.0616 42 1 7.3137 0.6826 5.2542 43 1 8.3078 -1.1448 5.4872 44 1 6.9181 -0.8961 6.5712 45 1 7.5619 -2.5352 6.3107 46 1 4.8729 -1.6903 2.6712 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609356750.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:06 Heat of formation + Delta-G solvation = -117.485394 kcal Electronic energy + Delta-G solvation = -30471.008865 eV Core-core repulsion = 26327.167831 eV Total energy + Delta-G solvation = -4143.841034 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.03088 -41.20901 -39.79456 -39.21809 -37.54009 -36.98973 -34.78803 -34.13215 -32.10218 -31.30714 -30.20884 -29.01614 -27.83318 -27.49107 -26.15594 -23.55266 -23.34890 -22.93015 -21.70623 -20.43944 -19.45498 -19.06066 -18.86566 -18.00936 -17.46082 -17.19686 -17.10548 -17.02394 -16.83003 -16.40041 -16.28348 -16.00161 -15.82240 -15.66151 -15.49751 -14.70877 -14.37174 -14.27003 -14.12631 -13.90109 -13.58784 -13.31257 -13.18171 -12.94547 -12.79523 -12.57881 -12.55287 -12.47588 -12.26505 -12.25287 -12.17878 -12.15252 -11.92438 -11.77317 -11.45136 -11.25985 -10.74607 -10.26794 -9.68421 -9.12910 -9.02112 -8.24432 -6.25105 0.08938 0.42267 1.15913 1.32479 1.33222 1.38307 1.44205 1.88826 2.23215 2.32896 2.34975 2.61706 3.08578 3.25198 3.51495 3.89125 3.93794 3.97743 4.04289 4.08711 4.26758 4.30268 4.31702 4.33968 4.35901 4.38419 4.43156 4.45340 4.64920 4.70038 4.75615 4.86437 4.95082 4.97782 5.12279 5.13337 5.20787 5.44013 5.47786 5.56886 5.58574 5.67257 5.78378 5.98965 6.18065 6.20790 6.48990 6.55989 6.79142 7.02436 7.36063 8.92464 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.008338 B = 0.005689 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3357.373420 B = 4920.980052 C = 6368.694218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.202 4.202 3 C 0.086 3.914 4 N -0.513 5.513 5 C 0.182 3.818 6 C -0.499 4.499 7 H 0.036 0.964 8 C 0.015 3.985 9 N -0.947 5.947 10 Si 0.931 3.069 11 H -0.273 1.273 12 H -0.280 1.280 13 H -0.246 1.246 14 C 0.132 3.868 15 H 0.098 0.902 16 C 0.498 3.502 17 O -0.520 6.520 18 O -0.502 6.502 19 C -0.014 4.014 20 C -0.166 4.166 21 C 0.151 3.849 22 O -0.336 6.336 23 C 0.016 3.984 24 C -0.284 4.284 25 C 0.160 3.840 26 O -0.323 6.323 27 C 0.014 3.986 28 C -0.179 4.179 29 H 0.119 0.881 30 H 0.084 0.916 31 H 0.123 0.877 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.005 0.995 35 H 0.027 0.973 36 H 0.265 0.735 37 H 0.429 0.571 38 H 0.113 0.887 39 H 0.075 0.925 40 H 0.118 0.882 41 H 0.062 0.938 42 H 0.165 0.835 43 H 0.069 0.931 44 H 0.060 0.940 45 H 0.126 0.874 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.705 -14.743 0.430 22.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.222 4.222 3 C -0.041 4.041 4 N -0.237 5.237 5 C 0.056 3.944 6 C -0.538 4.538 7 H 0.054 0.946 8 C -0.182 4.182 9 N -0.588 5.588 10 Si 0.755 3.245 11 H -0.198 1.198 12 H -0.206 1.206 13 H -0.169 1.169 14 C 0.022 3.978 15 H 0.116 0.884 16 C 0.339 3.661 17 O -0.407 6.407 18 O -0.316 6.316 19 C -0.015 4.015 20 C -0.185 4.185 21 C 0.106 3.894 22 O -0.250 6.250 23 C -0.078 4.078 24 C -0.304 4.304 25 C 0.114 3.886 26 O -0.236 6.236 27 C -0.080 4.080 28 C -0.198 4.198 29 H 0.137 0.863 30 H 0.103 0.897 31 H 0.140 0.860 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.022 0.978 35 H 0.045 0.955 36 H 0.074 0.926 37 H 0.291 0.709 38 H 0.131 0.869 39 H 0.093 0.907 40 H 0.137 0.863 41 H 0.081 0.919 42 H 0.182 0.818 43 H 0.087 0.913 44 H 0.078 0.922 45 H 0.144 0.856 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 16.611 -13.965 0.656 21.711 hybrid contribution -0.330 -0.136 0.395 0.532 sum 16.281 -14.101 1.051 21.564 Atomic orbital electron populations 1.23976 0.95908 1.02244 0.98216 1.23570 0.97257 0.99067 1.02272 1.21301 0.94596 0.95539 0.92690 1.61985 1.14434 1.43593 1.03722 1.19900 0.91770 0.95560 0.87150 1.21084 1.28181 1.01379 1.03129 0.94560 1.25641 0.94895 0.97555 1.00091 1.70037 1.34232 1.27263 1.27264 0.85951 0.77758 0.81119 0.79711 1.19823 1.20588 1.16903 1.20002 0.92070 0.97544 0.88164 0.88444 1.22863 0.76521 0.81809 0.84926 1.90714 1.57440 1.28623 1.63948 1.84472 1.65335 1.37967 1.43838 1.18743 0.95356 0.92395 0.95012 1.20210 1.00689 0.98443 0.99179 1.18774 0.92809 0.84666 0.93190 1.86123 1.61731 1.27418 1.49706 1.23406 0.92335 1.05728 0.86333 1.21463 1.10721 0.91513 1.06669 1.18574 0.93297 0.85488 0.91286 1.86069 1.63617 1.29797 1.44108 1.23419 0.92271 1.05637 0.86642 1.20272 1.03081 0.99164 0.97293 0.86315 0.89724 0.85957 0.90484 0.91667 0.97773 0.95531 0.92616 0.70866 0.86899 0.90694 0.86348 0.91931 0.81809 0.91260 0.92162 0.85629 0.83110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.26 14.31 67.79 0.97 -4.29 16 2 C -0.20 -6.67 7.42 25.66 0.19 -6.48 16 3 C 0.09 3.40 5.29 85.56 0.45 3.86 16 4 N -0.51 -21.93 3.77 -888.89 -3.35 -25.28 16 5 C 0.18 8.79 3.39 85.56 0.29 9.08 16 6 C -0.50 -29.25 9.20 25.60 0.24 -29.01 16 7 H 0.04 2.40 7.55 -2.91 -0.02 2.37 16 8 C 0.02 0.90 5.47 84.65 0.46 1.37 16 9 N -0.95 -60.10 13.96 21.44 0.30 -59.80 16 10 Si 0.93 44.87 27.38 68.60 1.88 46.75 16 11 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 13 H -0.25 -10.94 6.67 99.48 0.66 -10.28 16 14 C 0.13 4.58 1.88 43.42 0.08 4.67 16 15 H 0.10 2.97 6.44 -2.39 -0.02 2.95 16 16 C 0.50 15.88 6.34 71.24 0.45 16.33 16 17 O -0.52 -19.95 16.18 21.96 0.36 -19.59 16 18 O -0.50 -11.22 13.42 -51.42 -0.69 -11.91 16 19 C -0.01 -0.50 3.32 -19.89 -0.07 -0.57 16 20 C -0.17 -6.51 8.72 22.38 0.20 -6.31 16 21 C 0.15 5.17 6.68 22.49 0.15 5.32 16 22 O -0.34 -10.95 10.50 -92.42 -0.97 -11.92 16 23 C 0.02 0.32 9.81 113.37 1.11 1.43 16 24 C -0.28 -7.78 8.02 22.46 0.18 -7.60 16 25 C 0.16 4.47 6.68 22.49 0.15 4.62 16 26 O -0.32 -7.55 10.50 -92.44 -0.97 -8.52 16 27 C 0.01 0.20 9.81 113.37 1.11 1.31 16 28 C -0.18 -5.44 9.60 22.38 0.21 -5.22 16 29 H 0.12 3.04 8.06 -2.91 -0.02 3.01 16 30 H 0.08 2.99 7.84 -2.91 -0.02 2.96 16 31 H 0.12 3.42 6.97 -2.91 -0.02 3.40 16 32 H 0.08 2.90 6.14 -2.39 -0.01 2.89 16 33 H 0.06 2.98 6.77 -2.39 -0.02 2.96 16 34 H 0.00 0.22 6.12 -2.39 -0.01 0.20 16 35 H 0.03 1.31 5.47 -2.39 -0.01 1.30 16 36 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 37 H 0.43 5.42 9.10 -74.05 -0.67 4.75 16 38 H 0.11 5.17 7.91 -2.91 -0.02 5.15 16 39 H 0.07 1.11 7.66 -2.39 -0.02 1.09 16 40 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.06 1.12 7.66 -2.39 -0.02 1.10 16 42 H 0.16 3.22 4.54 -2.91 -0.01 3.21 16 43 H 0.07 0.76 7.66 -2.39 -0.02 0.74 16 44 H 0.06 0.79 7.66 -2.39 -0.02 0.77 16 45 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.15 3.90 7.99 -2.91 -0.02 3.88 16 Total: -1.00 -79.14 378.69 3.03 -76.10 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: 0.30 Total: 25.65 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: 6.18 Total: -11.50 kcal Atomic # 7 Polarization: -82.02 SS G_CDS: -3.05 Total: -85.07 kcal Atomic # 8 Polarization: -49.66 SS G_CDS: -2.28 Total: -51.94 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.88 Total: 46.75 kcal Total: -79.14 3.03 -76.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609356750.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.385 kcal (2) G-P(sol) polarization free energy of solvation -79.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds