Wall clock time and date at job start Tue Mar 31 2020 18:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36002 * 116.99808 * 2 1 4 4 C 1.38563 * 120.07173 * 359.97438 * 3 2 1 5 5 C 1.38250 * 119.99565 * 180.02562 * 4 3 2 6 6 C 1.38245 * 120.14488 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.92459 * 180.02562 * 6 5 4 8 8 N 1.46905 * 109.47321 * 89.99956 * 7 6 5 9 9 C 1.47957 * 111.00051 * 170.00087 * 8 7 6 10 10 C 1.53934 * 86.17811 * 222.41749 * 9 8 7 11 11 C 1.50706 * 113.73362 * 138.08265 * 10 9 8 12 12 O 1.20827 * 119.99684 * 1.89375 * 11 10 9 13 13 O 1.34225 * 119.99835 * 181.90357 * 11 10 9 14 14 C 1.48186 * 111.07096 * 70.56559 * 8 7 6 15 15 C 1.38245 * 120.15183 * 0.27896 * 6 5 4 16 16 C 1.38566 * 119.99501 * 359.48909 * 15 6 5 17 17 O 1.35989 * 120.07225 * 180.25283 * 16 15 6 18 18 C 1.42901 * 117.00260 * 0.23526 * 17 16 15 19 19 C 1.52994 * 109.47517 * 180.02562 * 18 17 16 20 20 C 1.50699 * 109.47479 * 180.02562 * 19 18 17 21 21 H 1.08000 * 119.99734 * 359.97438 * 20 19 18 22 22 C 1.37872 * 120.00304 * 179.97438 * 20 19 18 23 23 N 1.31521 * 119.99917 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00209 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47031 * 60.00269 * 24 22 20 26 26 H 1.48504 * 109.47168 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47387 * 300.00343 * 24 22 20 28 28 H 1.08997 * 109.47233 * 300.00397 * 1 2 3 29 29 H 1.09004 * 109.46893 * 60.00303 * 1 2 3 30 30 H 1.08992 * 109.46875 * 179.97438 * 1 2 3 31 31 H 1.08000 * 120.00546 * 0.04060 * 4 3 2 32 32 H 1.08002 * 119.92293 * 180.02562 * 5 4 3 33 33 H 1.08999 * 109.47022 * 330.00067 * 7 6 5 34 34 H 1.08996 * 109.47553 * 210.00141 * 7 6 5 35 35 H 1.09006 * 113.75754 * 108.10281 * 9 8 7 36 36 H 1.08999 * 113.75952 * 336.73294 * 9 8 7 37 37 H 1.08998 * 113.73400 * 269.25445 * 10 9 8 38 38 H 0.96700 * 116.99825 * 180.02562 * 13 11 10 39 39 H 1.09000 * 113.75847 * 23.24037 * 14 8 7 40 40 H 1.08998 * 113.82742 * 251.81310 * 14 8 7 41 41 H 1.08000 * 119.99940 * 179.74240 * 15 6 5 42 42 H 1.08999 * 109.46893 * 299.99956 * 18 17 16 43 43 H 1.09000 * 109.47008 * 59.99858 * 18 17 16 44 44 H 1.08999 * 109.46997 * 299.99885 * 19 18 17 45 45 H 1.09002 * 109.47561 * 59.99665 * 19 18 17 46 46 H 0.97006 * 119.99846 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2932 2.3748 -0.0005 5 6 1.9224 3.6058 -0.0011 6 6 3.3029 3.6799 -0.0005 7 6 3.9836 5.0244 -0.0005 8 7 4.2043 5.4616 1.3845 9 6 5.0774 6.6551 1.4310 10 6 5.7760 5.9705 2.6196 11 6 7.2779 6.0925 2.5927 12 8 7.8176 6.7161 1.7096 13 8 8.0160 5.5083 3.5495 14 6 5.2517 4.6441 2.0407 15 6 4.0603 2.5234 -0.0053 16 6 3.4360 1.2864 0.0001 17 8 4.1795 0.1478 0.0006 18 6 5.6003 0.3007 0.0007 19 6 6.2619 -1.0788 0.0007 20 6 7.7602 -0.9175 0.0014 21 1 8.1969 0.0702 0.0013 22 6 8.5735 -2.0308 0.0020 23 7 8.0416 -3.2337 0.0025 24 14 10.4307 -1.8308 0.0021 25 1 10.8478 -1.0813 1.2144 26 1 11.0728 -3.1699 0.0035 27 1 10.8481 -1.0824 -1.2106 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2146 2.3197 -0.0003 32 1 1.3341 4.5116 -0.0011 33 1 3.3539 5.7504 -0.5148 34 1 4.9419 4.9465 -0.5140 35 1 4.5532 7.5726 1.6988 36 1 5.7138 6.7682 0.5534 37 1 5.3464 6.2269 3.5880 38 1 8.9753 5.6146 3.4903 39 1 5.9391 4.1678 1.3418 40 1 4.8665 3.9577 2.7947 41 1 5.1386 2.5841 -0.0091 42 1 5.9066 0.8501 -0.8895 43 1 5.9065 0.8509 0.8905 44 1 5.9556 -1.6286 0.8906 45 1 5.9557 -1.6287 -0.8893 46 1 8.6138 -4.0170 0.0026 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001611046853.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:34 Heat of formation + Delta-G solvation = -108.039915 kcal Electronic energy + Delta-G solvation = -28729.157315 eV Core-core repulsion = 24585.725867 eV Total energy + Delta-G solvation = -4143.431447 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.24867 -40.32309 -39.25587 -38.13535 -36.84628 -36.29652 -33.39523 -32.31507 -30.63876 -29.72360 -29.00772 -27.33742 -26.45671 -25.47753 -24.94629 -22.62760 -22.44241 -21.03351 -20.51263 -19.90933 -18.47262 -18.24488 -17.37229 -16.93881 -16.48250 -16.39234 -15.98840 -15.82192 -15.48737 -14.99238 -14.88263 -14.62822 -14.59612 -14.49592 -13.92485 -13.84102 -13.12395 -12.93525 -12.72501 -12.65426 -12.43127 -12.30696 -11.96523 -11.83807 -11.59380 -11.51072 -11.27663 -11.20167 -11.06003 -10.92801 -10.86052 -10.78124 -10.67544 -10.53773 -9.83676 -9.65428 -9.30147 -9.21199 -8.54797 -8.43417 -7.50471 -6.08957 -4.13828 1.36806 1.58313 1.88092 2.71495 3.28547 3.33088 3.34606 3.41149 3.51659 3.79894 3.85931 3.96306 4.40984 4.55708 4.58888 4.73720 4.82828 4.97969 5.02501 5.10090 5.16769 5.17430 5.22656 5.27189 5.28520 5.34955 5.44649 5.49714 5.53403 5.57092 5.67791 5.81856 5.88573 6.02948 6.04700 6.23161 6.30062 6.33638 6.55315 6.66221 6.71847 6.82682 7.32255 7.56401 7.61966 7.66888 7.84270 8.10459 8.25073 8.91446 9.50223 11.02508 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.006122 B = 0.004327 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4572.328623 B = 6470.050141 C =10603.989912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.303 6.303 3 C 0.091 3.909 4 C -0.175 4.175 5 C -0.108 4.108 6 C -0.081 4.081 7 C 0.066 3.934 8 N -0.469 5.469 9 C 0.021 3.979 10 C -0.118 4.118 11 C 0.487 3.513 12 O -0.516 6.516 13 O -0.511 6.511 14 C 0.024 3.976 15 C -0.172 4.172 16 C 0.120 3.880 17 O -0.304 6.304 18 C 0.065 3.935 19 C 0.027 3.973 20 C -0.527 4.527 21 H 0.056 0.944 22 C 0.062 3.938 23 N -0.888 5.888 24 Si 0.898 3.102 25 H -0.276 1.276 26 H -0.285 1.285 27 H -0.276 1.276 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.097 0.903 31 H 0.130 0.870 32 H 0.122 0.878 33 H 0.089 0.911 34 H 0.053 0.947 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.135 0.865 38 H 0.412 0.588 39 H 0.079 0.921 40 H 0.106 0.894 41 H 0.132 0.868 42 H 0.048 0.952 43 H 0.048 0.952 44 H 0.028 0.972 45 H 0.028 0.972 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.982 18.988 3.931 22.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.216 6.216 3 C 0.046 3.954 4 C -0.194 4.194 5 C -0.127 4.127 6 C -0.082 4.082 7 C -0.062 4.062 8 N -0.192 5.192 9 C -0.107 4.107 10 C -0.138 4.138 11 C 0.329 3.671 12 O -0.404 6.404 13 O -0.322 6.322 14 C -0.104 4.104 15 C -0.192 4.192 16 C 0.073 3.927 17 O -0.217 6.217 18 C -0.009 4.009 19 C -0.010 4.010 20 C -0.565 4.565 21 H 0.075 0.925 22 C -0.141 4.141 23 N -0.526 5.526 24 Si 0.725 3.275 25 H -0.201 1.201 26 H -0.211 1.211 27 H -0.201 1.201 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.116 0.884 31 H 0.148 0.852 32 H 0.140 0.860 33 H 0.107 0.893 34 H 0.071 0.929 35 H 0.119 0.881 36 H 0.105 0.895 37 H 0.153 0.847 38 H 0.271 0.729 39 H 0.098 0.902 40 H 0.124 0.876 41 H 0.150 0.850 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.047 0.953 45 H 0.046 0.954 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.845 18.529 3.961 22.892 hybrid contribution 2.388 0.313 -0.460 2.452 sum -10.457 18.842 3.501 21.832 Atomic orbital electron populations 1.23018 0.79197 1.03745 1.00778 1.86247 1.20447 1.25961 1.88960 1.18350 0.89421 0.85105 1.02559 1.20958 0.99540 0.91531 1.07351 1.20532 0.93487 0.96708 1.01979 1.19219 0.93460 0.93261 1.02256 1.21523 0.99907 0.94380 0.90382 1.68722 1.32294 1.03147 1.15024 1.23988 0.93919 0.96195 0.96621 1.23000 0.86959 1.00649 1.03147 1.23331 0.90968 0.74593 0.78217 1.90728 1.73914 1.39552 1.36175 1.84555 1.25498 1.71118 1.51075 1.23967 0.93014 0.94378 0.99072 1.21013 1.00326 0.90760 1.07050 1.18389 0.88518 0.86972 0.98800 1.86288 1.20889 1.27249 1.87273 1.23318 0.75007 1.03268 0.99291 1.19099 0.94096 0.88893 0.98951 1.20917 0.90343 0.92822 1.52417 0.92540 1.24975 0.99047 0.95128 0.94924 1.69973 1.35522 0.97599 1.49552 0.86571 0.84916 0.77334 0.78683 1.20114 1.21080 1.20127 0.92997 0.93039 0.88415 0.85182 0.85954 0.89312 0.92925 0.88067 0.89467 0.84681 0.72923 0.90241 0.87560 0.85007 0.93380 0.93367 0.95341 0.95374 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.30 -4.95 10.28 -34.25 -0.35 -5.30 16 3 C 0.09 1.48 6.70 -39.12 -0.26 1.21 16 4 C -0.17 -2.22 9.04 -39.46 -0.36 -2.58 16 5 C -0.11 -1.29 9.69 -39.57 -0.38 -1.67 16 6 C -0.08 -1.04 5.12 -104.62 -0.54 -1.57 16 7 C 0.07 0.69 4.97 -4.97 -0.02 0.66 16 8 N -0.47 -4.71 6.25 -239.61 -1.50 -6.21 16 9 C 0.02 0.18 7.31 -2.76 -0.02 0.16 16 10 C -0.12 -1.04 4.43 -90.84 -0.40 -1.44 16 11 C 0.49 5.08 7.86 36.01 0.28 5.36 16 12 O -0.52 -6.82 16.67 -18.75 -0.31 -7.13 16 13 O -0.51 -4.57 13.42 -39.24 -0.53 -5.10 16 14 C 0.02 0.25 6.53 -2.64 -0.02 0.24 16 15 C -0.17 -2.64 7.96 -39.46 -0.31 -2.96 16 16 C 0.12 2.17 6.70 -39.12 -0.26 1.91 16 17 O -0.30 -6.56 9.92 -34.21 -0.34 -6.90 16 18 C 0.07 1.42 4.68 37.15 0.17 1.60 16 19 C 0.03 0.71 5.34 -27.89 -0.15 0.56 16 20 C -0.53 -14.74 9.11 -34.44 -0.31 -15.06 16 21 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 22 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 23 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 24 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 29 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 30 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.13 1.28 6.30 -52.49 -0.33 0.95 16 32 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.09 0.79 8.08 -51.93 -0.42 0.37 16 34 H 0.05 0.56 7.64 -51.93 -0.40 0.17 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 0.83 7.09 -51.93 -0.37 0.46 16 37 H 0.14 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.41 2.12 9.10 45.56 0.41 2.54 16 39 H 0.08 0.91 7.07 -51.93 -0.37 0.54 16 40 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.13 2.00 5.70 -52.49 -0.30 1.70 16 42 H 0.05 0.99 7.65 -51.93 -0.40 0.60 16 43 H 0.05 0.98 7.67 -51.93 -0.40 0.59 16 44 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 386.00 15.07 5.82 5.82 Total: -1.00 -34.63 386.00 -9.05 -43.67 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -5.86 Total: 1.32 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -1.69 Total: -10.63 kcal Atomic # 7 Polarization: -31.30 SS G_CDS: -0.76 Total: -32.06 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -1.53 Total: -24.42 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.63 -9.05 -43.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611046853.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.369 kcal (2) G-P(sol) polarization free energy of solvation -34.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds