Wall clock time and date at job start Tue Mar 31 2020 18:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36002 * 116.99808 * 2 1 4 4 C 1.38563 * 120.07173 * 359.97438 * 3 2 1 5 5 C 1.38250 * 119.99565 * 180.02562 * 4 3 2 6 6 C 1.38245 * 120.14488 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.92459 * 180.02562 * 6 5 4 8 8 N 1.46905 * 109.47321 * 89.99956 * 7 6 5 9 9 C 1.47957 * 111.00051 * 170.00087 * 8 7 6 10 10 C 1.53934 * 86.17811 * 222.41749 * 9 8 7 11 11 C 1.50706 * 113.73362 * 138.08265 * 10 9 8 12 12 O 1.20827 * 119.99684 * 1.89375 * 11 10 9 13 13 O 1.34225 * 119.99835 * 181.90357 * 11 10 9 14 14 C 1.48186 * 111.07096 * 70.56559 * 8 7 6 15 15 C 1.38245 * 120.15183 * 0.27896 * 6 5 4 16 16 C 1.38566 * 119.99501 * 359.48909 * 15 6 5 17 17 O 1.35989 * 120.07225 * 180.25283 * 16 15 6 18 18 C 1.42901 * 117.00260 * 0.23526 * 17 16 15 19 19 C 1.52994 * 109.47517 * 180.02562 * 18 17 16 20 20 C 1.50699 * 109.47479 * 180.02562 * 19 18 17 21 21 H 1.08000 * 119.99734 * 359.97438 * 20 19 18 22 22 C 1.37872 * 120.00304 * 179.97438 * 20 19 18 23 23 N 1.31521 * 119.99917 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00209 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47031 * 60.00269 * 24 22 20 26 26 H 1.48504 * 109.47168 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47387 * 300.00343 * 24 22 20 28 28 H 1.08997 * 109.47233 * 300.00397 * 1 2 3 29 29 H 1.09004 * 109.46893 * 60.00303 * 1 2 3 30 30 H 1.08992 * 109.46875 * 179.97438 * 1 2 3 31 31 H 1.08000 * 120.00546 * 0.04060 * 4 3 2 32 32 H 1.08002 * 119.92293 * 180.02562 * 5 4 3 33 33 H 1.08999 * 109.47022 * 330.00067 * 7 6 5 34 34 H 1.08996 * 109.47553 * 210.00141 * 7 6 5 35 35 H 1.09006 * 113.75754 * 108.10281 * 9 8 7 36 36 H 1.08999 * 113.75952 * 336.73294 * 9 8 7 37 37 H 1.08998 * 113.73400 * 269.25445 * 10 9 8 38 38 H 0.96700 * 116.99825 * 180.02562 * 13 11 10 39 39 H 1.09000 * 113.75847 * 23.24037 * 14 8 7 40 40 H 1.08998 * 113.82742 * 251.81310 * 14 8 7 41 41 H 1.08000 * 119.99940 * 179.74240 * 15 6 5 42 42 H 1.08999 * 109.46893 * 299.99956 * 18 17 16 43 43 H 1.09000 * 109.47008 * 59.99858 * 18 17 16 44 44 H 1.08999 * 109.46997 * 299.99885 * 19 18 17 45 45 H 1.09002 * 109.47561 * 59.99665 * 19 18 17 46 46 H 0.97006 * 119.99846 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2932 2.3748 -0.0005 5 6 1.9224 3.6058 -0.0011 6 6 3.3029 3.6799 -0.0005 7 6 3.9836 5.0244 -0.0005 8 7 4.2043 5.4616 1.3845 9 6 5.0774 6.6551 1.4310 10 6 5.7760 5.9705 2.6196 11 6 7.2779 6.0925 2.5927 12 8 7.8176 6.7161 1.7096 13 8 8.0160 5.5083 3.5495 14 6 5.2517 4.6441 2.0407 15 6 4.0603 2.5234 -0.0053 16 6 3.4360 1.2864 0.0001 17 8 4.1795 0.1478 0.0006 18 6 5.6003 0.3007 0.0007 19 6 6.2619 -1.0788 0.0007 20 6 7.7602 -0.9175 0.0014 21 1 8.1969 0.0702 0.0013 22 6 8.5735 -2.0308 0.0020 23 7 8.0416 -3.2337 0.0025 24 14 10.4307 -1.8308 0.0021 25 1 10.8478 -1.0813 1.2144 26 1 11.0728 -3.1699 0.0035 27 1 10.8481 -1.0824 -1.2106 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2146 2.3197 -0.0003 32 1 1.3341 4.5116 -0.0011 33 1 3.3539 5.7504 -0.5148 34 1 4.9419 4.9465 -0.5140 35 1 4.5532 7.5726 1.6988 36 1 5.7138 6.7682 0.5534 37 1 5.3464 6.2269 3.5880 38 1 8.9753 5.6146 3.4903 39 1 5.9391 4.1678 1.3418 40 1 4.8665 3.9577 2.7947 41 1 5.1386 2.5841 -0.0091 42 1 5.9066 0.8501 -0.8895 43 1 5.9065 0.8509 0.8905 44 1 5.9556 -1.6286 0.8906 45 1 5.9557 -1.6287 -0.8893 46 1 8.6138 -4.0170 0.0026 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001611046853.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:33 Heat of formation + Delta-G solvation = -133.145287 kcal Electronic energy + Delta-G solvation = -28730.245965 eV Core-core repulsion = 24585.725867 eV Total energy + Delta-G solvation = -4144.520098 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.06709 -41.45168 -40.08670 -39.47271 -37.98107 -37.11680 -35.49516 -33.31782 -32.38079 -30.98010 -30.09003 -28.22208 -27.21405 -27.06896 -26.17253 -23.98095 -23.51485 -22.37284 -21.84886 -20.65466 -19.50379 -19.24293 -18.64165 -18.16398 -17.67962 -17.53909 -17.26232 -17.08447 -16.56025 -16.34264 -16.30495 -15.87631 -15.59711 -15.41524 -15.09847 -14.71257 -14.33694 -14.21996 -14.13028 -13.85403 -13.52712 -13.44315 -13.14230 -13.03074 -12.80169 -12.64421 -12.63499 -12.56088 -12.28539 -12.10788 -12.01796 -11.86112 -11.77224 -11.65758 -11.60187 -11.50880 -11.42423 -10.62841 -10.01537 -9.64712 -8.71944 -8.27425 -6.41793 0.28460 0.45742 1.07421 1.38891 1.43061 1.51139 2.02387 2.25742 2.42703 2.50121 2.63615 2.93523 3.06573 3.20889 3.66947 3.80854 3.83563 3.96724 4.09189 4.14996 4.22690 4.24710 4.31956 4.36901 4.38927 4.43778 4.45291 4.48773 4.56347 4.66943 4.71354 4.73512 4.75198 4.82058 4.98209 5.07157 5.24797 5.29533 5.32987 5.44551 5.54407 5.58862 5.66728 5.79250 5.85248 6.04059 6.24394 6.70604 6.73518 6.91981 7.28307 8.85641 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.006122 B = 0.004327 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4572.328623 B = 6470.050141 C =10603.989912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.342 6.342 3 C 0.076 3.924 4 C -0.165 4.165 5 C -0.093 4.093 6 C -0.081 4.081 7 C 0.067 3.933 8 N -0.467 5.467 9 C 0.026 3.974 10 C -0.110 4.110 11 C 0.489 3.511 12 O -0.548 6.548 13 O -0.512 6.512 14 C 0.017 3.983 15 C -0.172 4.172 16 C 0.070 3.930 17 O -0.336 6.336 18 C 0.087 3.913 19 C 0.031 3.969 20 C -0.546 4.546 21 H 0.069 0.931 22 C 0.003 3.997 23 N -0.930 5.930 24 Si 0.975 3.025 25 H -0.262 1.262 26 H -0.281 1.281 27 H -0.265 1.265 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.109 0.891 31 H 0.165 0.835 32 H 0.160 0.840 33 H 0.114 0.886 34 H 0.046 0.954 35 H 0.125 0.875 36 H 0.077 0.923 37 H 0.158 0.842 38 H 0.427 0.573 39 H 0.063 0.937 40 H 0.101 0.899 41 H 0.124 0.876 42 H 0.055 0.945 43 H 0.057 0.943 44 H -0.003 1.003 45 H -0.005 1.005 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.848 22.105 4.369 25.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.257 6.257 3 C 0.030 3.970 4 C -0.183 4.183 5 C -0.112 4.112 6 C -0.081 4.081 7 C -0.060 4.060 8 N -0.190 5.190 9 C -0.102 4.102 10 C -0.129 4.129 11 C 0.333 3.667 12 O -0.439 6.439 13 O -0.325 6.325 14 C -0.112 4.112 15 C -0.192 4.192 16 C 0.025 3.975 17 O -0.251 6.251 18 C 0.012 3.988 19 C -0.006 4.006 20 C -0.584 4.584 21 H 0.088 0.912 22 C -0.195 4.195 23 N -0.569 5.569 24 Si 0.798 3.202 25 H -0.187 1.187 26 H -0.206 1.206 27 H -0.189 1.189 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.127 0.873 31 H 0.182 0.818 32 H 0.178 0.822 33 H 0.132 0.868 34 H 0.064 0.936 35 H 0.143 0.857 36 H 0.096 0.904 37 H 0.176 0.824 38 H 0.288 0.712 39 H 0.081 0.919 40 H 0.119 0.881 41 H 0.142 0.858 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.015 0.985 45 H 0.014 0.986 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.729 21.666 4.413 26.027 hybrid contribution 2.500 -0.622 -0.571 2.639 sum -11.229 21.045 3.843 24.161 Atomic orbital electron populations 1.23348 0.76422 1.05264 1.02540 1.86190 1.23527 1.26779 1.89202 1.18656 0.88997 0.86306 1.03027 1.21346 1.01043 0.90402 1.05535 1.21009 0.93238 0.97775 0.99138 1.19498 0.94099 0.93348 1.01199 1.21563 0.99938 0.93583 0.90926 1.68729 1.32257 1.03488 1.14501 1.24024 0.93557 0.96479 0.96103 1.23073 0.86010 0.99456 1.04403 1.23623 0.91649 0.73774 0.77677 1.90716 1.74643 1.41123 1.37384 1.84531 1.26927 1.70589 1.50484 1.23929 0.93216 0.95089 0.98965 1.21046 1.00216 0.90926 1.06972 1.18840 0.89405 0.86631 1.02631 1.86182 1.20222 1.29851 1.88816 1.22808 0.75982 0.99966 0.99995 1.18925 0.94752 0.91125 0.95813 1.21330 0.91013 0.93643 1.52428 0.91245 1.26034 1.04868 0.94560 0.94060 1.70127 1.37735 0.98643 1.50426 0.85357 0.77775 0.77625 0.79433 1.18700 1.20612 1.18937 0.91126 0.91126 0.87296 0.81766 0.82250 0.86837 0.93556 0.85657 0.90444 0.82424 0.71159 0.91876 0.88085 0.85793 0.92700 0.92433 0.98490 0.98627 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.47 16 2 O -0.34 -11.38 10.28 -79.71 -0.82 -12.20 16 3 C 0.08 2.44 6.70 22.57 0.15 2.59 16 4 C -0.16 -3.74 9.04 22.35 0.20 -3.54 16 5 C -0.09 -1.89 9.69 22.27 0.22 -1.68 16 6 C -0.08 -1.91 5.12 -19.86 -0.10 -2.02 16 7 C 0.07 1.25 4.97 85.56 0.43 1.68 16 8 N -0.47 -8.23 6.25 -911.98 -5.70 -13.93 16 9 C 0.03 0.39 7.31 86.41 0.63 1.02 16 10 C -0.11 -1.73 4.43 -10.89 -0.05 -1.78 16 11 C 0.49 9.65 7.86 71.24 0.56 10.21 16 12 O -0.55 -14.11 16.67 21.96 0.37 -13.75 16 13 O -0.51 -8.54 13.42 -51.37 -0.69 -9.22 16 14 C 0.02 0.34 6.53 86.36 0.56 0.90 16 15 C -0.17 -5.35 7.96 22.35 0.18 -5.18 16 16 C 0.07 2.64 6.70 22.57 0.15 2.79 16 17 O -0.34 -15.52 9.92 -79.56 -0.79 -16.31 16 18 C 0.09 4.02 4.68 71.98 0.34 4.36 16 19 C 0.03 1.77 5.34 29.85 0.16 1.93 16 20 C -0.55 -31.55 9.11 25.60 0.23 -31.32 16 21 H 0.07 3.73 7.74 -2.91 -0.02 3.71 16 22 C 0.00 0.20 5.46 84.65 0.46 0.66 16 23 N -0.93 -57.62 13.29 21.45 0.28 -57.33 16 24 Si 0.98 44.03 29.54 68.60 2.03 46.06 16 25 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 26 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 27 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 28 H 0.07 1.08 7.66 -2.39 -0.02 1.06 16 29 H 0.07 1.08 7.66 -2.39 -0.02 1.06 16 30 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.16 2.53 6.30 -2.91 -0.02 2.51 16 32 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 33 H 0.11 1.57 8.08 -2.39 -0.02 1.55 16 34 H 0.05 0.93 7.64 -2.39 -0.02 0.91 16 35 H 0.13 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.08 1.34 7.09 -2.39 -0.02 1.32 16 37 H 0.16 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.43 3.93 9.10 -74.06 -0.67 3.25 16 39 H 0.06 1.46 7.07 -2.39 -0.02 1.44 16 40 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.12 3.93 5.70 -2.91 -0.02 3.91 16 42 H 0.05 2.40 7.65 -2.39 -0.02 2.38 16 43 H 0.06 2.48 7.67 -2.39 -0.02 2.47 16 44 H 0.00 -0.21 8.14 -2.39 -0.02 -0.22 16 45 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 46 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 Total: -1.00 -79.08 386.00 0.25 -78.83 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.33 Total: 15.75 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: 5.23 Total: -17.90 kcal Atomic # 7 Polarization: -65.85 SS G_CDS: -5.42 Total: -71.27 kcal Atomic # 8 Polarization: -49.55 SS G_CDS: -1.93 Total: -51.48 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -79.08 0.25 -78.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611046853.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.312 kcal (2) G-P(sol) polarization free energy of solvation -79.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds