Wall clock time and date at job start Tue Mar 31 2020 19:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34229 * 116.99814 * 2 1 4 4 O 1.20822 * 120.00294 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99825 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.62930 * 331.47768 * 5 3 2 7 7 C 1.52890 * 109.79132 * 91.97253 * 5 3 2 8 8 C 1.50739 * 109.96936 * 170.20583 * 7 5 3 9 9 C 1.38725 * 118.42978 * 163.29630 * 8 7 5 10 10 C 1.37932 * 120.42696 * 179.56934 * 9 8 7 11 11 C 1.38760 * 119.77293 * 359.97438 * 10 9 8 12 12 O 1.35903 * 120.12392 * 180.02562 * 11 10 9 13 13 C 1.38507 * 119.74845 * 0.08650 * 11 10 9 14 14 C 1.37879 * 121.63619 * 343.01110 * 8 7 5 15 15 C 1.50637 * 121.84563 * 0.60902 * 14 8 7 16 16 N 1.46627 * 110.48948 * 342.32553 * 15 14 8 17 17 C 1.46897 * 110.99960 * 175.99712 * 16 15 14 18 18 C 1.52996 * 109.47410 * 284.57531 * 17 16 15 19 19 O 1.42904 * 109.47242 * 67.35791 * 18 17 16 20 20 C 1.42899 * 114.00091 * 180.02562 * 19 18 17 21 21 C 1.50697 * 109.47070 * 180.02562 * 20 19 18 22 22 H 1.08002 * 120.00263 * 0.02562 * 21 20 19 23 23 C 1.37884 * 119.99899 * 179.97438 * 21 20 19 24 24 N 1.31513 * 120.00087 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99915 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.46859 * 90.00439 * 25 23 21 27 27 H 1.48497 * 109.47282 * 210.00055 * 25 23 21 28 28 H 1.48507 * 109.47285 * 330.00735 * 25 23 21 29 29 H 1.09003 * 109.47035 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47587 * 300.00552 * 1 2 3 31 31 H 1.09003 * 109.47005 * 60.00568 * 1 2 3 32 32 H 1.08992 * 109.38549 * 50.05095 * 7 5 3 33 33 H 1.09004 * 109.38733 * 290.35481 * 7 5 3 34 34 H 1.08001 * 119.78506 * 359.53592 * 9 8 7 35 35 H 1.07997 * 120.11427 * 179.71120 * 10 9 8 36 36 H 0.96704 * 113.99742 * 90.00174 * 12 11 10 37 37 H 1.07989 * 119.83433 * 179.97438 * 13 11 10 38 38 H 1.09001 * 109.29363 * 102.63406 * 15 14 8 39 39 H 1.08995 * 109.30214 * 222.21054 * 15 14 8 40 40 H 1.09000 * 109.47266 * 44.57152 * 17 16 15 41 41 H 1.09002 * 109.47474 * 164.57283 * 17 16 15 42 42 H 1.09000 * 109.47849 * 187.36535 * 18 17 16 43 43 H 1.09001 * 109.47165 * 307.36410 * 18 17 16 44 44 H 1.08998 * 109.47216 * 300.00399 * 20 19 18 45 45 H 1.08998 * 109.47048 * 60.00062 * 20 19 18 46 46 H 0.96998 * 119.99829 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9793 0.3931 0.4893 7 6 4.0801 1.3517 -1.4385 8 6 5.5533 1.6705 -1.4424 9 6 6.2758 1.4403 -2.6041 10 6 7.6243 1.7255 -2.6561 11 6 8.2620 2.2467 -1.5393 12 8 9.5903 2.5308 -1.5829 13 6 7.5399 2.4750 -0.3796 14 6 6.1849 2.1849 -0.3299 15 6 5.4440 2.4450 0.9556 16 7 3.9981 2.4860 0.7153 17 6 3.2594 2.6443 1.9751 18 6 3.2540 1.3157 2.7337 19 8 4.5811 1.0082 3.1655 20 6 4.6874 -0.2203 3.8877 21 6 6.1219 -0.4425 4.2923 22 1 6.8769 0.2821 4.0251 23 6 6.4704 -1.5705 5.0046 24 7 5.5511 -2.4527 5.3304 25 14 8.2487 -1.8464 5.5055 26 1 8.4885 -1.2341 6.8371 27 1 8.5231 -3.3042 5.5744 28 1 9.1482 -1.2201 4.5035 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 3.5396 2.1317 -1.9746 33 1 3.9157 0.3943 -1.9331 34 1 5.7793 1.0345 -3.4731 35 1 8.1829 1.5400 -3.5616 36 1 9.7905 3.4316 -1.8722 37 1 8.0348 2.8801 0.4905 38 1 5.6685 1.6509 1.6677 39 1 5.7648 3.4010 1.3692 40 1 3.7408 3.4088 2.5850 41 1 2.2337 2.9439 1.7598 42 1 2.5988 1.3951 3.6012 43 1 2.8930 0.5239 2.0772 44 1 4.0619 -0.1730 4.7791 45 1 4.3563 -1.0436 3.2548 46 1 5.7964 -3.2463 5.8312 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001620667908.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:45 Heat of formation + Delta-G solvation = -134.569074 kcal Electronic energy + Delta-G solvation = -30161.567097 eV Core-core repulsion = 26016.985259 eV Total energy + Delta-G solvation = -4144.581838 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.14641 -39.92203 -38.43298 -37.01168 -36.51036 -35.51515 -32.99289 -32.66122 -31.76253 -29.48664 -28.66052 -27.60714 -26.94775 -24.51183 -24.43855 -22.44785 -22.38191 -21.69384 -21.18786 -19.45733 -18.04385 -17.68710 -16.93229 -16.77918 -16.39298 -16.14496 -15.68629 -15.58853 -15.27575 -14.99049 -14.85685 -14.28987 -14.24253 -13.84627 -13.74032 -13.37735 -13.33012 -12.96514 -12.76929 -12.64911 -12.34162 -12.19183 -11.96278 -11.79087 -11.60265 -11.42357 -11.19412 -11.13796 -10.97504 -10.89217 -10.84202 -10.64200 -10.43093 -10.17268 -10.10309 -9.19041 -8.95954 -8.83039 -8.37477 -8.32502 -7.98013 -6.16286 -4.18828 1.25494 1.37884 2.11602 2.56373 3.27511 3.33091 3.38276 3.60115 3.88271 4.19132 4.30179 4.58765 4.61028 4.79661 4.93655 4.95732 5.01803 5.03984 5.09694 5.19243 5.20635 5.27003 5.32690 5.42656 5.45774 5.53805 5.58460 5.73915 5.76781 5.85448 5.94692 5.98262 6.03845 6.15305 6.30518 6.36552 6.43298 6.45734 6.55156 6.83509 6.96709 7.01141 7.11088 7.33423 7.64229 7.71553 7.74645 8.06245 8.42430 8.92581 9.46463 10.95006 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.007128 B = 0.005182 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3927.007774 B = 5401.899058 C = 8338.972147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.357 6.357 3 C 0.470 3.530 4 O -0.491 6.491 5 C 0.086 3.914 6 H 0.091 0.909 7 C -0.060 4.060 8 C -0.081 4.081 9 C -0.101 4.101 10 C -0.151 4.151 11 C 0.103 3.897 12 O -0.499 6.499 13 C -0.138 4.138 14 C -0.044 4.044 15 C 0.074 3.926 16 N -0.504 5.504 17 C 0.040 3.960 18 C 0.019 3.981 19 O -0.390 6.390 20 C 0.194 3.806 21 C -0.516 4.516 22 H 0.066 0.934 23 C 0.058 3.942 24 N -0.897 5.897 25 Si 0.906 3.094 26 H -0.278 1.278 27 H -0.285 1.285 28 H -0.270 1.270 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.386 0.614 37 H 0.131 0.869 38 H 0.109 0.891 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.100 0.900 42 H 0.045 0.955 43 H 0.037 0.963 44 H 0.005 0.995 45 H 0.005 0.995 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.351 8.870 -15.989 18.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.273 6.273 3 C 0.312 3.688 4 O -0.377 6.377 5 C -0.024 4.024 6 H 0.108 0.892 7 C -0.097 4.097 8 C -0.081 4.081 9 C -0.119 4.119 10 C -0.170 4.170 11 C 0.058 3.942 12 O -0.309 6.309 13 C -0.157 4.157 14 C -0.045 4.045 15 C -0.053 4.053 16 N -0.229 5.229 17 C -0.087 4.087 18 C -0.060 4.060 19 O -0.310 6.310 20 C 0.120 3.880 21 C -0.554 4.554 22 H 0.084 0.916 23 C -0.143 4.143 24 N -0.536 5.536 25 Si 0.733 3.267 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.195 1.195 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.242 0.758 37 H 0.149 0.851 38 H 0.126 0.874 39 H 0.111 0.889 40 H 0.108 0.892 41 H 0.118 0.882 42 H 0.063 0.937 43 H 0.055 0.945 44 H 0.023 0.977 45 H 0.022 0.978 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.506 8.939 -16.033 18.901 hybrid contribution 0.560 -0.714 0.851 1.244 sum -3.945 8.225 -15.182 17.711 Atomic orbital electron populations 1.23279 0.76277 1.03817 1.02463 1.86565 1.23460 1.33318 1.83918 1.23453 0.91567 0.81460 0.72307 1.90621 1.66819 1.36090 1.44174 1.21345 0.87155 0.96097 0.97770 0.89154 1.20404 0.92628 1.02845 0.93841 1.19348 0.94827 1.00327 0.93588 1.20863 0.93558 1.00017 0.97434 1.21252 0.94732 1.02696 0.98292 1.18329 0.82903 0.99796 0.93137 1.84854 1.20039 1.35818 1.90152 1.21294 0.93412 1.02492 0.98492 1.19590 0.93250 0.96647 0.94965 1.21479 0.85062 1.04547 0.94165 1.62558 1.05035 1.34013 1.21256 1.22626 1.00513 0.96978 0.88604 1.23139 0.88224 0.96711 0.97927 1.87808 1.24112 1.44432 1.74658 1.20236 0.97840 0.79914 0.89968 1.21003 0.92856 1.06456 1.35095 0.91554 1.24936 0.98262 0.95472 0.95650 1.69957 1.33257 1.11197 1.39148 0.86364 0.83941 0.77362 0.79043 1.20432 1.21034 1.19503 0.88001 0.91808 0.91922 0.89312 0.89486 0.85711 0.85655 0.75835 0.85124 0.87398 0.88919 0.89220 0.88161 0.93677 0.94461 0.97695 0.97759 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.90 10.45 -39.26 -0.41 -5.31 16 3 C 0.47 6.93 4.80 36.00 0.17 7.11 16 4 O -0.49 -7.83 14.45 -18.75 -0.27 -8.10 16 5 C 0.09 1.28 1.72 -68.78 -0.12 1.16 16 6 H 0.09 1.53 6.97 -51.93 -0.36 1.17 16 7 C -0.06 -0.75 5.25 -27.92 -0.15 -0.90 16 8 C -0.08 -1.08 5.77 -104.55 -0.60 -1.69 16 9 C -0.10 -1.17 9.65 -39.51 -0.38 -1.56 16 10 C -0.15 -1.78 9.99 -39.50 -0.39 -2.18 16 11 C 0.10 1.33 6.70 -39.29 -0.26 1.07 16 12 O -0.50 -5.81 13.51 -19.44 -0.26 -6.07 16 13 C -0.14 -1.94 9.59 -39.33 -0.38 -2.32 16 14 C -0.04 -0.65 5.79 -104.63 -0.61 -1.26 16 15 C 0.07 1.16 4.96 -5.15 -0.03 1.14 16 16 N -0.50 -7.77 4.63 -229.61 -1.06 -8.83 16 17 C 0.04 0.63 5.31 -3.83 -0.02 0.61 16 18 C 0.02 0.35 5.40 37.16 0.20 0.55 16 19 O -0.39 -8.75 7.44 -35.23 -0.26 -9.01 16 20 C 0.19 5.17 5.69 36.00 0.20 5.37 16 21 C -0.52 -14.75 9.43 -34.44 -0.32 -15.08 16 22 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 23 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 24 N -0.90 -26.52 13.29 55.43 0.74 -25.79 16 25 Si 0.91 21.69 29.54 -169.99 -5.02 16.67 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 29 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 31 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 32 H 0.09 1.06 8.11 -51.93 -0.42 0.64 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 35 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 36 H 0.39 2.45 9.06 45.56 0.41 2.86 16 37 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.11 2.07 5.27 -51.93 -0.27 1.79 16 39 H 0.09 1.35 8.13 -51.93 -0.42 0.92 16 40 H 0.09 1.35 8.00 -51.93 -0.42 0.93 16 41 H 0.10 1.54 6.02 -51.93 -0.31 1.23 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.04 0.69 5.10 -51.93 -0.26 0.43 16 44 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 45 H 0.00 0.13 8.14 -51.93 -0.42 -0.30 16 46 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 374.62 15.07 5.65 5.65 Total: -1.00 -33.46 374.62 -8.45 -41.91 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -5.83 Total: 3.86 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -1.71 Total: -4.97 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: -0.33 Total: -34.62 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -1.21 Total: -28.50 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.46 -8.45 -41.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001620667908.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.661 kcal (2) G-P(sol) polarization free energy of solvation -33.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds