Wall clock time and date at job start Tue Mar 31 2020 19:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34229 * 116.99814 * 2 1 4 4 O 1.20822 * 120.00294 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99825 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.62930 * 331.47768 * 5 3 2 7 7 C 1.52890 * 109.79132 * 91.97253 * 5 3 2 8 8 C 1.50739 * 109.96936 * 170.20583 * 7 5 3 9 9 C 1.38725 * 118.42978 * 163.29630 * 8 7 5 10 10 C 1.37932 * 120.42696 * 179.56934 * 9 8 7 11 11 C 1.38760 * 119.77293 * 359.97438 * 10 9 8 12 12 O 1.35903 * 120.12392 * 180.02562 * 11 10 9 13 13 C 1.38507 * 119.74845 * 0.08650 * 11 10 9 14 14 C 1.37879 * 121.63619 * 343.01110 * 8 7 5 15 15 C 1.50637 * 121.84563 * 0.60902 * 14 8 7 16 16 N 1.46627 * 110.48948 * 342.32553 * 15 14 8 17 17 C 1.46897 * 110.99960 * 175.99712 * 16 15 14 18 18 C 1.52996 * 109.47410 * 284.57531 * 17 16 15 19 19 O 1.42904 * 109.47242 * 67.35791 * 18 17 16 20 20 C 1.42899 * 114.00091 * 180.02562 * 19 18 17 21 21 C 1.50697 * 109.47070 * 180.02562 * 20 19 18 22 22 H 1.08002 * 120.00263 * 0.02562 * 21 20 19 23 23 C 1.37884 * 119.99899 * 179.97438 * 21 20 19 24 24 N 1.31513 * 120.00087 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99915 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.46859 * 90.00439 * 25 23 21 27 27 H 1.48497 * 109.47282 * 210.00055 * 25 23 21 28 28 H 1.48507 * 109.47285 * 330.00735 * 25 23 21 29 29 H 1.09003 * 109.47035 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47587 * 300.00552 * 1 2 3 31 31 H 1.09003 * 109.47005 * 60.00568 * 1 2 3 32 32 H 1.08992 * 109.38549 * 50.05095 * 7 5 3 33 33 H 1.09004 * 109.38733 * 290.35481 * 7 5 3 34 34 H 1.08001 * 119.78506 * 359.53592 * 9 8 7 35 35 H 1.07997 * 120.11427 * 179.71120 * 10 9 8 36 36 H 0.96704 * 113.99742 * 90.00174 * 12 11 10 37 37 H 1.07989 * 119.83433 * 179.97438 * 13 11 10 38 38 H 1.09001 * 109.29363 * 102.63406 * 15 14 8 39 39 H 1.08995 * 109.30214 * 222.21054 * 15 14 8 40 40 H 1.09000 * 109.47266 * 44.57152 * 17 16 15 41 41 H 1.09002 * 109.47474 * 164.57283 * 17 16 15 42 42 H 1.09000 * 109.47849 * 187.36535 * 18 17 16 43 43 H 1.09001 * 109.47165 * 307.36410 * 18 17 16 44 44 H 1.08998 * 109.47216 * 300.00399 * 20 19 18 45 45 H 1.08998 * 109.47048 * 60.00062 * 20 19 18 46 46 H 0.96998 * 119.99829 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9793 0.3931 0.4893 7 6 4.0801 1.3517 -1.4385 8 6 5.5533 1.6705 -1.4424 9 6 6.2758 1.4403 -2.6041 10 6 7.6243 1.7255 -2.6561 11 6 8.2620 2.2467 -1.5393 12 8 9.5903 2.5308 -1.5829 13 6 7.5399 2.4750 -0.3796 14 6 6.1849 2.1849 -0.3299 15 6 5.4440 2.4450 0.9556 16 7 3.9981 2.4860 0.7153 17 6 3.2594 2.6443 1.9751 18 6 3.2540 1.3157 2.7337 19 8 4.5811 1.0082 3.1655 20 6 4.6874 -0.2203 3.8877 21 6 6.1219 -0.4425 4.2923 22 1 6.8769 0.2821 4.0251 23 6 6.4704 -1.5705 5.0046 24 7 5.5511 -2.4527 5.3304 25 14 8.2487 -1.8464 5.5055 26 1 8.4885 -1.2341 6.8371 27 1 8.5231 -3.3042 5.5744 28 1 9.1482 -1.2201 4.5035 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 3.5396 2.1317 -1.9746 33 1 3.9157 0.3943 -1.9331 34 1 5.7793 1.0345 -3.4731 35 1 8.1829 1.5400 -3.5616 36 1 9.7905 3.4316 -1.8722 37 1 8.0348 2.8801 0.4905 38 1 5.6685 1.6509 1.6677 39 1 5.7648 3.4010 1.3692 40 1 3.7408 3.4088 2.5850 41 1 2.2337 2.9439 1.7598 42 1 2.5988 1.3951 3.6012 43 1 2.8930 0.5239 2.0772 44 1 4.0619 -0.1730 4.7791 45 1 4.3563 -1.0436 3.2548 46 1 5.7964 -3.2463 5.8312 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001620667908.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:45 Heat of formation + Delta-G solvation = -157.966310 kcal Electronic energy + Delta-G solvation = -30162.581677 eV Core-core repulsion = 26016.985259 eV Total energy + Delta-G solvation = -4145.596418 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.30367 -40.94663 -39.64587 -38.40362 -37.66245 -36.79426 -34.95703 -33.91900 -32.94035 -30.53420 -30.20361 -28.83766 -28.50133 -25.79525 -25.51139 -24.51198 -23.50780 -22.93000 -22.24783 -20.58835 -19.13237 -18.75515 -18.67529 -18.10035 -17.81177 -17.61177 -17.02908 -16.70264 -16.50672 -16.42375 -16.07463 -15.92378 -15.44220 -15.16334 -15.07173 -14.54153 -14.33953 -14.29537 -14.08102 -13.84953 -13.63390 -13.39930 -13.29582 -13.09962 -13.02307 -12.77889 -12.74794 -12.57475 -12.51320 -12.24739 -12.14484 -12.12244 -11.79699 -11.44926 -11.37725 -11.18142 -10.93230 -10.35201 -9.88817 -9.41875 -9.24753 -8.35188 -6.47327 0.28145 0.38579 0.95243 1.37671 1.39698 1.51322 1.51826 2.30292 2.59434 2.69784 2.99182 3.04439 3.31939 3.55835 3.60778 3.83559 3.90968 3.93169 3.99492 4.06578 4.11812 4.25624 4.30513 4.31761 4.34273 4.37719 4.56323 4.61848 4.66972 4.69242 4.73880 4.78863 4.85526 4.96645 5.04022 5.09286 5.16046 5.23727 5.34858 5.46001 5.50740 5.51431 5.69611 5.87362 5.90824 5.93354 6.42227 6.61658 6.73784 6.90301 7.24086 8.77001 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.007128 B = 0.005182 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3927.007774 B = 5401.899058 C = 8338.972147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.368 6.368 3 C 0.476 3.524 4 O -0.505 6.505 5 C 0.083 3.917 6 H 0.063 0.937 7 C -0.054 4.054 8 C -0.093 4.093 9 C -0.095 4.095 10 C -0.149 4.149 11 C 0.100 3.900 12 O -0.510 6.510 13 C -0.156 4.156 14 C -0.066 4.066 15 C 0.082 3.918 16 N -0.499 5.499 17 C 0.050 3.950 18 C 0.016 3.984 19 O -0.390 6.390 20 C 0.211 3.789 21 C -0.543 4.543 22 H 0.063 0.937 23 C 0.009 3.991 24 N -0.929 5.929 25 Si 0.977 3.023 26 H -0.267 1.267 27 H -0.275 1.275 28 H -0.266 1.266 29 H 0.128 0.872 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.157 0.843 35 H 0.151 0.849 36 H 0.409 0.591 37 H 0.126 0.874 38 H 0.070 0.930 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.110 0.890 42 H 0.048 0.952 43 H 0.035 0.965 44 H -0.016 1.016 45 H -0.018 1.018 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.631 8.990 -17.818 20.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C 0.318 3.682 4 O -0.393 6.393 5 C -0.026 4.026 6 H 0.081 0.919 7 C -0.092 4.092 8 C -0.093 4.093 9 C -0.112 4.112 10 C -0.167 4.167 11 C 0.055 3.945 12 O -0.323 6.323 13 C -0.175 4.175 14 C -0.067 4.067 15 C -0.045 4.045 16 N -0.223 5.223 17 C -0.078 4.078 18 C -0.062 4.062 19 O -0.310 6.310 20 C 0.136 3.864 21 C -0.580 4.580 22 H 0.081 0.919 23 C -0.189 4.189 24 N -0.568 5.568 25 Si 0.800 3.200 26 H -0.192 1.192 27 H -0.200 1.200 28 H -0.190 1.190 29 H 0.146 0.854 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.117 0.883 33 H 0.126 0.874 34 H 0.175 0.825 35 H 0.169 0.831 36 H 0.268 0.732 37 H 0.144 0.856 38 H 0.087 0.913 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.128 0.872 42 H 0.066 0.934 43 H 0.053 0.947 44 H 0.002 0.998 45 H 0.000 1.000 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.798 9.081 -17.877 20.408 hybrid contribution 0.276 -0.740 1.360 1.573 sum -3.522 8.342 -16.517 18.836 Atomic orbital electron populations 1.23615 0.74166 1.05822 1.02985 1.86549 1.25595 1.32714 1.83518 1.23319 0.91354 0.81593 0.71924 1.90607 1.67043 1.36513 1.45107 1.21384 0.87604 0.94575 0.99067 0.91867 1.20447 0.92183 1.04330 0.92193 1.19543 0.95392 1.00468 0.93946 1.21198 0.93574 0.98856 0.97617 1.21571 0.94961 1.01511 0.98698 1.18450 0.83305 0.99615 0.93095 1.84789 1.19256 1.37846 1.90380 1.21375 0.93468 1.03500 0.99205 1.19576 0.93664 0.98410 0.95005 1.21296 0.85432 1.03353 0.94422 1.62608 1.04819 1.34259 1.20649 1.22599 1.01236 0.95328 0.88638 1.23365 0.86369 0.98249 0.98250 1.87838 1.26609 1.42384 1.74148 1.19809 0.96775 0.80898 0.88926 1.21312 0.93626 1.07086 1.36014 0.91893 1.25898 1.03089 0.94830 0.95129 1.70063 1.35587 1.11694 1.39469 0.85264 0.78003 0.77700 0.78992 1.19206 1.19990 1.18986 0.85357 0.92064 0.90649 0.88331 0.87382 0.82521 0.83103 0.73196 0.85554 0.91259 0.88401 0.88525 0.87231 0.93384 0.94667 0.99842 1.00030 0.92063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.56 113.37 1.20 1.70 16 2 O -0.37 -9.93 10.45 -51.41 -0.54 -10.47 16 3 C 0.48 13.86 4.80 71.23 0.34 14.20 16 4 O -0.51 -15.74 14.45 21.98 0.32 -15.42 16 5 C 0.08 2.51 1.72 44.08 0.08 2.58 16 6 H 0.06 2.25 6.97 -2.39 -0.02 2.24 16 7 C -0.05 -1.30 5.25 29.82 0.16 -1.14 16 8 C -0.09 -2.41 5.77 -19.82 -0.11 -2.52 16 9 C -0.09 -1.96 9.65 22.31 0.22 -1.75 16 10 C -0.15 -3.13 9.99 22.32 0.22 -2.90 16 11 C 0.10 2.46 6.70 22.46 0.15 2.61 16 12 O -0.51 -11.03 13.51 -92.46 -1.25 -12.28 16 13 C -0.16 -4.43 9.59 22.43 0.22 -4.21 16 14 C -0.07 -1.97 5.79 -19.87 -0.12 -2.09 16 15 C 0.08 2.67 4.96 85.59 0.42 3.10 16 16 N -0.50 -15.60 4.63 -880.35 -4.08 -19.68 16 17 C 0.05 1.59 5.31 86.30 0.46 2.05 16 18 C 0.02 0.62 5.40 71.98 0.39 1.00 16 19 O -0.39 -18.36 7.44 -148.98 -1.11 -19.47 16 20 C 0.21 11.75 5.69 71.24 0.41 12.15 16 21 C -0.54 -31.96 9.43 25.60 0.24 -31.71 16 22 H 0.06 3.66 7.81 -2.91 -0.02 3.64 16 23 C 0.01 0.54 5.46 84.66 0.46 1.00 16 24 N -0.93 -55.79 13.29 21.45 0.28 -55.50 16 25 Si 0.98 44.55 29.54 68.60 2.03 46.58 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 27 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 28 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 29 H 0.13 1.69 8.14 -2.39 -0.02 1.68 16 30 H 0.06 1.19 8.13 -2.39 -0.02 1.17 16 31 H 0.07 1.23 8.13 -2.39 -0.02 1.21 16 32 H 0.10 2.17 8.11 -2.39 -0.02 2.15 16 33 H 0.11 2.09 8.14 -2.38 -0.02 2.07 16 34 H 0.16 2.20 8.06 -2.91 -0.02 2.17 16 35 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 36 H 0.41 4.41 9.06 -74.05 -0.67 3.74 16 37 H 0.13 3.51 8.06 -2.92 -0.02 3.48 16 38 H 0.07 2.83 5.27 -2.39 -0.01 2.82 16 39 H 0.10 2.97 8.13 -2.39 -0.02 2.95 16 40 H 0.10 2.93 8.00 -2.39 -0.02 2.91 16 41 H 0.11 3.35 6.02 -2.39 -0.01 3.33 16 42 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.04 1.37 5.10 -2.39 -0.01 1.35 16 44 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 45 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 46 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -72.96 374.62 0.72 -72.24 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 0.34 Total: 19.92 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: 4.73 Total: -5.93 kcal Atomic # 7 Polarization: -71.39 SS G_CDS: -3.79 Total: -75.18 kcal Atomic # 8 Polarization: -55.06 SS G_CDS: -2.58 Total: -57.64 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -72.96 0.72 -72.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001620667908.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.724 kcal (2) G-P(sol) polarization free energy of solvation -72.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds