Wall clock time and date at job start Tue Mar 31 2020 19:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00003 * 2 1 4 4 C 1.50708 * 109.54014 * 301.31083 * 3 2 1 5 5 O 1.21277 * 120.00058 * 141.94684 * 4 3 2 6 6 N 1.34777 * 119.99859 * 321.94125 * 4 3 2 7 7 C 1.46503 * 119.99780 * 174.90976 * 6 4 3 8 8 C 1.50702 * 109.46871 * 180.02562 * 7 6 4 9 9 C 1.38330 * 119.96337 * 269.72110 * 8 7 6 10 10 C 1.38276 * 120.13539 * 179.76814 * 9 8 7 11 11 C 1.38120 * 120.07067 * 0.51250 * 10 9 8 12 12 C 1.38858 * 119.92883 * 359.73988 * 11 10 9 13 13 O 1.35758 * 120.06641 * 179.97438 * 12 11 10 14 14 C 1.34831 * 116.99757 * 5.12185 * 13 12 11 15 15 H 1.07995 * 120.00206 * 5.26700 * 14 13 12 16 16 C 1.38659 * 119.99585 * 185.26005 * 14 13 12 17 17 N 1.31552 * 120.00002 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 119.99700 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47281 * 90.00274 * 18 16 14 20 20 H 1.48509 * 109.47125 * 210.00057 * 18 16 14 21 21 H 1.48500 * 109.47545 * 330.00177 * 18 16 14 22 22 C 1.38075 * 119.96997 * 89.99899 * 8 7 6 23 23 C 1.53178 * 109.62049 * 61.52978 * 3 2 1 24 24 C 1.53089 * 109.16491 * 176.89305 * 23 3 2 25 25 O 1.42911 * 109.41362 * 302.39203 * 24 23 3 26 26 C 1.42908 * 114.09357 * 61.15835 * 25 24 23 27 27 C 1.53094 * 109.41703 * 298.83904 * 26 25 24 28 28 H 1.09009 * 109.47310 * 294.95828 * 1 2 3 29 29 H 1.08998 * 109.47065 * 54.95221 * 1 2 3 30 30 H 1.09002 * 109.47350 * 174.95875 * 1 2 3 31 31 H 0.96996 * 120.00232 * 355.18656 * 6 4 3 32 32 H 1.09000 * 109.46613 * 299.99952 * 7 6 4 33 33 H 1.08994 * 109.47269 * 59.99927 * 7 6 4 34 34 H 1.07997 * 119.92540 * 359.97438 * 9 8 7 35 35 H 1.08004 * 119.96304 * 180.25089 * 10 9 8 36 36 H 1.08003 * 120.03569 * 179.76506 * 11 10 9 37 37 H 0.96996 * 120.00081 * 179.97438 * 17 16 14 38 38 H 1.08003 * 120.02827 * 359.95558 * 22 8 7 39 39 H 1.08997 * 109.52326 * 296.80089 * 23 3 2 40 40 H 1.08998 * 109.51664 * 56.98772 * 23 3 2 41 41 H 1.08994 * 109.48343 * 182.41338 * 24 23 3 42 42 H 1.08998 * 109.49022 * 62.37529 * 24 23 3 43 43 H 1.09001 * 109.47552 * 178.85711 * 26 25 24 44 44 H 1.08997 * 109.49211 * 58.82997 * 26 25 24 45 45 H 1.08997 * 109.51890 * 297.70494 * 27 26 25 46 46 H 1.08997 * 109.52052 * 177.51773 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5410 2.0662 -1.2134 5 8 1.2952 3.2507 -1.1289 6 7 1.3946 1.4300 -2.3926 7 6 0.8331 2.1411 -3.5438 8 6 0.7761 1.2122 -4.7291 9 6 1.8487 1.1360 -5.5993 10 6 1.8022 0.2813 -6.6853 11 6 0.6797 -0.4914 -6.9103 12 6 -0.4007 -0.4133 -6.0415 13 8 -1.5056 -1.1711 -6.2602 14 6 -1.4496 -2.0559 -7.2761 15 1 -0.5265 -2.1979 -7.8183 16 6 -2.5773 -2.7836 -7.6245 17 7 -3.7019 -2.6104 -6.9642 18 14 -2.4996 -4.0099 -9.0314 19 1 -2.1068 -5.3421 -8.5058 20 1 -3.8331 -4.1065 -9.6780 21 1 -1.4975 -3.5562 -10.0289 22 6 -0.3488 0.4423 -4.9485 23 6 1.5911 2.0551 1.2684 24 6 2.2809 3.4215 1.2956 25 8 3.6971 3.2400 1.2356 26 6 4.1517 2.5865 0.0488 27 6 3.5371 1.1865 -0.0286 28 1 -0.3634 0.4337 0.9318 29 1 -0.3633 0.5901 -0.8413 30 1 -0.3634 -1.0237 -0.0903 31 1 1.6572 0.5001 -2.4779 32 1 -0.1730 2.4847 -3.3031 33 1 1.4621 2.9984 -3.7834 34 1 2.7255 1.7429 -5.4282 35 1 2.6428 0.2211 -7.3607 36 1 0.6424 -1.1559 -7.7608 37 1 -4.4909 -3.1191 -7.2081 38 1 -1.1874 0.5050 -4.2708 39 1 0.5099 2.1928 1.2696 40 1 1.8870 1.4801 2.1458 41 1 2.0200 3.9421 2.2170 42 1 1.9534 4.0113 0.4395 43 1 5.2385 2.5056 0.0720 44 1 3.8488 3.1652 -0.8238 45 1 3.8723 0.5940 0.8226 46 1 3.8475 0.7031 -0.9549 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647193386.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:15 Heat of formation + Delta-G solvation = -123.240153 kcal Electronic energy + Delta-G solvation = -29378.254694 eV Core-core repulsion = 25234.164114 eV Total energy + Delta-G solvation = -4144.090579 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.30294 -39.27160 -38.33626 -37.64648 -36.84702 -34.67617 -32.79884 -32.38761 -31.45582 -30.79761 -29.21648 -27.28525 -26.46904 -25.36993 -24.49562 -23.73382 -22.17845 -21.75138 -20.88010 -19.94000 -18.06675 -17.72069 -17.24911 -16.76260 -16.36666 -16.02012 -15.80704 -15.43342 -15.24900 -14.92553 -14.78600 -14.59519 -14.37421 -14.21624 -13.83175 -13.71131 -13.54272 -13.35407 -12.76105 -12.60166 -12.59217 -12.47844 -12.27077 -11.93323 -11.73441 -11.65861 -11.43503 -11.26708 -10.97368 -10.89794 -10.81383 -10.75104 -10.51613 -10.42359 -9.84186 -9.49452 -9.36716 -9.07215 -8.93175 -8.29958 -7.38844 -6.54124 -4.13599 1.82194 2.20812 2.32745 3.03406 3.07886 3.09803 3.12711 3.35641 3.70840 3.88518 4.26215 4.37488 4.41759 4.57757 4.67496 4.86325 5.00340 5.01077 5.06647 5.13067 5.18202 5.18858 5.25263 5.32363 5.44800 5.46787 5.52929 5.60801 5.64801 5.71340 5.71608 5.74663 5.80538 5.91120 6.02169 6.18332 6.39046 6.48719 6.68354 6.74992 6.94214 6.98862 7.10975 7.21223 7.29421 7.41234 7.65104 7.89878 8.03352 8.91319 9.59231 10.63584 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.020729 B = 0.002507 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.461705 B =11168.003547 C =11791.281670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.366 6.366 3 C 0.101 3.899 4 C 0.493 3.507 5 O -0.535 6.535 6 N -0.708 5.708 7 C 0.165 3.835 8 C -0.074 4.074 9 C -0.195 4.195 10 C -0.075 4.075 11 C -0.225 4.225 12 C 0.151 3.849 13 O -0.175 6.175 14 C -0.393 4.393 15 H 0.092 0.908 16 C 0.040 3.960 17 N -0.860 5.860 18 Si 0.941 3.059 19 H -0.272 1.272 20 H -0.277 1.277 21 H -0.267 1.267 22 C -0.171 4.171 23 C -0.161 4.161 24 C 0.042 3.958 25 O -0.382 6.382 26 C 0.062 3.938 27 C -0.139 4.139 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.096 0.904 31 H 0.409 0.591 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.128 0.872 37 H 0.271 0.729 38 H 0.117 0.883 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.056 0.944 45 H 0.093 0.907 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.105 6.884 12.575 18.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.285 6.285 3 C 0.059 3.941 4 C 0.278 3.722 5 O -0.413 6.413 6 N -0.360 5.360 7 C 0.043 3.957 8 C -0.075 4.075 9 C -0.214 4.214 10 C -0.093 4.093 11 C -0.244 4.244 12 C 0.097 3.903 13 O -0.079 6.079 14 C -0.469 4.469 15 H 0.110 0.890 16 C -0.164 4.164 17 N -0.495 5.495 18 Si 0.766 3.234 19 H -0.198 1.198 20 H -0.202 1.202 21 H -0.192 1.192 22 C -0.191 4.191 23 C -0.199 4.199 24 C -0.034 4.034 25 O -0.301 6.301 26 C -0.015 4.015 27 C -0.177 4.177 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.115 0.885 31 H 0.244 0.756 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.146 0.854 37 H 0.081 0.919 38 H 0.135 0.865 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.109 0.891 42 H 0.115 0.885 43 H 0.120 0.880 44 H 0.074 0.926 45 H 0.111 0.889 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 11.653 7.511 12.868 18.916 hybrid contribution -0.375 -1.156 -1.141 1.667 sum 11.278 6.356 11.727 17.468 Atomic orbital electron populations 1.22962 0.80178 1.03893 1.00718 1.88010 1.20546 1.25111 1.94795 1.21814 0.95574 0.84056 0.92695 1.21214 0.77869 0.88015 0.85085 1.90577 1.50792 1.15246 1.84710 1.46242 1.63340 1.16385 1.10000 1.20211 0.99171 0.93541 0.82766 1.19226 0.94532 0.97794 0.95929 1.20465 0.98673 1.04156 0.98146 1.20749 0.96900 0.95184 0.96510 1.21257 0.95050 1.05321 1.02783 1.19320 0.87708 0.90406 0.92894 1.83994 1.31289 1.44375 1.48207 1.21318 0.98475 1.16174 1.10976 0.89043 1.25299 0.94192 0.98302 0.98638 1.70028 1.00900 1.39569 1.38986 0.85709 0.78227 0.79769 0.79724 1.19805 1.20190 1.19167 1.20044 0.99088 1.00820 0.99138 1.22588 1.02136 0.98349 0.96874 1.23093 0.80203 0.95555 1.04527 1.87894 1.22566 1.78925 1.40684 1.22570 0.99546 0.90708 0.88648 1.22201 0.90760 0.99715 1.05061 0.93459 0.93207 0.88516 0.75550 0.90867 0.90709 0.87526 0.87235 0.85409 0.91904 0.86523 0.90177 0.89691 0.89133 0.88516 0.88021 0.92614 0.88880 0.89494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.22 101.05 1.03 1.23 16 2 O -0.37 -4.19 9.85 -35.23 -0.35 -4.54 16 3 C 0.10 1.12 0.80 -91.59 -0.07 1.05 16 4 C 0.49 6.28 4.39 -10.98 -0.05 6.23 16 5 O -0.53 -7.94 13.04 5.56 0.07 -7.87 16 6 N -0.71 -8.98 4.80 -61.47 -0.30 -9.27 16 7 C 0.17 2.30 5.80 -5.19 -0.03 2.27 16 8 C -0.07 -1.20 5.25 -104.65 -0.55 -1.75 16 9 C -0.19 -3.08 9.70 -39.53 -0.38 -3.46 16 10 C -0.08 -1.28 10.04 -39.61 -0.40 -1.68 16 11 C -0.22 -4.59 9.14 -39.40 -0.36 -4.95 16 12 C 0.15 3.43 6.65 -39.11 -0.26 3.17 16 13 O -0.18 -4.80 9.76 0.02 0.00 -4.80 16 14 C -0.39 -10.59 9.45 30.89 0.29 -10.30 16 15 H 0.09 2.27 5.28 -52.49 -0.28 1.99 16 16 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 17 N -0.86 -24.54 13.67 55.48 0.76 -23.79 16 18 Si 0.94 19.89 29.55 -169.99 -5.02 14.87 16 19 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 20 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 22 C -0.17 -3.34 9.64 -39.40 -0.38 -3.72 16 23 C -0.16 -1.66 4.46 -26.59 -0.12 -1.78 16 24 C 0.04 0.46 6.54 37.20 0.24 0.70 16 25 O -0.38 -4.40 10.77 -35.23 -0.38 -4.78 16 26 C 0.06 0.61 6.60 37.21 0.25 0.86 16 27 C -0.14 -1.33 5.28 -26.59 -0.14 -1.47 16 28 H 0.05 0.43 6.80 -51.92 -0.35 0.08 16 29 H 0.05 0.58 6.54 -51.93 -0.34 0.24 16 30 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.41 5.06 8.08 -40.82 -0.33 4.73 16 32 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 33 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 34 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 35 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 36 H 0.13 2.63 5.70 -52.48 -0.30 2.34 16 37 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 38 H 0.12 2.24 8.06 -52.48 -0.42 1.82 16 39 H 0.08 0.81 6.88 -51.93 -0.36 0.45 16 40 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.10 1.22 5.19 -51.93 -0.27 0.95 16 43 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.61 7.12 -51.93 -0.37 0.24 16 45 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 371.28 15.07 5.60 5.60 Total: -1.00 -30.46 371.28 -7.02 -37.47 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -6.37 Total: 9.74 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -1.02 Total: -12.64 kcal Atomic # 7 Polarization: -33.52 SS G_CDS: 0.46 Total: -33.06 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.65 Total: -21.98 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.46 -7.02 -37.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647193386.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.769 kcal (2) G-P(sol) polarization free energy of solvation -30.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds