Wall clock time and date at job start Tue Mar 31 2020 19:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00003 * 2 1 4 4 C 1.50708 * 109.54014 * 301.31083 * 3 2 1 5 5 O 1.21277 * 120.00058 * 141.94684 * 4 3 2 6 6 N 1.34777 * 119.99859 * 321.94125 * 4 3 2 7 7 C 1.46503 * 119.99780 * 174.90976 * 6 4 3 8 8 C 1.50702 * 109.46871 * 180.02562 * 7 6 4 9 9 C 1.38330 * 119.96337 * 269.72110 * 8 7 6 10 10 C 1.38276 * 120.13539 * 179.76814 * 9 8 7 11 11 C 1.38120 * 120.07067 * 0.51250 * 10 9 8 12 12 C 1.38858 * 119.92883 * 359.73988 * 11 10 9 13 13 O 1.35758 * 120.06641 * 179.97438 * 12 11 10 14 14 C 1.34831 * 116.99757 * 5.12185 * 13 12 11 15 15 H 1.07995 * 120.00206 * 5.26700 * 14 13 12 16 16 C 1.38659 * 119.99585 * 185.26005 * 14 13 12 17 17 N 1.31552 * 120.00002 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 119.99700 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47281 * 90.00274 * 18 16 14 20 20 H 1.48509 * 109.47125 * 210.00057 * 18 16 14 21 21 H 1.48500 * 109.47545 * 330.00177 * 18 16 14 22 22 C 1.38075 * 119.96997 * 89.99899 * 8 7 6 23 23 C 1.53178 * 109.62049 * 61.52978 * 3 2 1 24 24 C 1.53089 * 109.16491 * 176.89305 * 23 3 2 25 25 O 1.42911 * 109.41362 * 302.39203 * 24 23 3 26 26 C 1.42908 * 114.09357 * 61.15835 * 25 24 23 27 27 C 1.53094 * 109.41703 * 298.83904 * 26 25 24 28 28 H 1.09009 * 109.47310 * 294.95828 * 1 2 3 29 29 H 1.08998 * 109.47065 * 54.95221 * 1 2 3 30 30 H 1.09002 * 109.47350 * 174.95875 * 1 2 3 31 31 H 0.96996 * 120.00232 * 355.18656 * 6 4 3 32 32 H 1.09000 * 109.46613 * 299.99952 * 7 6 4 33 33 H 1.08994 * 109.47269 * 59.99927 * 7 6 4 34 34 H 1.07997 * 119.92540 * 359.97438 * 9 8 7 35 35 H 1.08004 * 119.96304 * 180.25089 * 10 9 8 36 36 H 1.08003 * 120.03569 * 179.76506 * 11 10 9 37 37 H 0.96996 * 120.00081 * 179.97438 * 17 16 14 38 38 H 1.08003 * 120.02827 * 359.95558 * 22 8 7 39 39 H 1.08997 * 109.52326 * 296.80089 * 23 3 2 40 40 H 1.08998 * 109.51664 * 56.98772 * 23 3 2 41 41 H 1.08994 * 109.48343 * 182.41338 * 24 23 3 42 42 H 1.08998 * 109.49022 * 62.37529 * 24 23 3 43 43 H 1.09001 * 109.47552 * 178.85711 * 26 25 24 44 44 H 1.08997 * 109.49211 * 58.82997 * 26 25 24 45 45 H 1.08997 * 109.51890 * 297.70494 * 27 26 25 46 46 H 1.08997 * 109.52052 * 177.51773 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5410 2.0662 -1.2134 5 8 1.2952 3.2507 -1.1289 6 7 1.3946 1.4300 -2.3926 7 6 0.8331 2.1411 -3.5438 8 6 0.7761 1.2122 -4.7291 9 6 1.8487 1.1360 -5.5993 10 6 1.8022 0.2813 -6.6853 11 6 0.6797 -0.4914 -6.9103 12 6 -0.4007 -0.4133 -6.0415 13 8 -1.5056 -1.1711 -6.2602 14 6 -1.4496 -2.0559 -7.2761 15 1 -0.5265 -2.1979 -7.8183 16 6 -2.5773 -2.7836 -7.6245 17 7 -3.7019 -2.6104 -6.9642 18 14 -2.4996 -4.0099 -9.0314 19 1 -2.1068 -5.3421 -8.5058 20 1 -3.8331 -4.1065 -9.6780 21 1 -1.4975 -3.5562 -10.0289 22 6 -0.3488 0.4423 -4.9485 23 6 1.5911 2.0551 1.2684 24 6 2.2809 3.4215 1.2956 25 8 3.6971 3.2400 1.2356 26 6 4.1517 2.5865 0.0488 27 6 3.5371 1.1865 -0.0286 28 1 -0.3634 0.4337 0.9318 29 1 -0.3633 0.5901 -0.8413 30 1 -0.3634 -1.0237 -0.0903 31 1 1.6572 0.5001 -2.4779 32 1 -0.1730 2.4847 -3.3031 33 1 1.4621 2.9984 -3.7834 34 1 2.7255 1.7429 -5.4282 35 1 2.6428 0.2211 -7.3607 36 1 0.6424 -1.1559 -7.7608 37 1 -4.4909 -3.1191 -7.2081 38 1 -1.1874 0.5050 -4.2708 39 1 0.5099 2.1928 1.2696 40 1 1.8870 1.4801 2.1458 41 1 2.0200 3.9421 2.2170 42 1 1.9534 4.0113 0.4395 43 1 5.2385 2.5056 0.0720 44 1 3.8488 3.1652 -0.8238 45 1 3.8723 0.5940 0.8226 46 1 3.8475 0.7031 -0.9549 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647193386.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:14 Heat of formation + Delta-G solvation = -144.343283 kcal Electronic energy + Delta-G solvation = -29379.169794 eV Core-core repulsion = 25234.164114 eV Total energy + Delta-G solvation = -4145.005680 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.24192 -40.85606 -39.38289 -38.55586 -38.38903 -35.88576 -34.30004 -33.64383 -32.42403 -32.00324 -30.79439 -28.16782 -27.77701 -27.12860 -25.49377 -24.53784 -23.33914 -23.09857 -22.34981 -20.97942 -19.58777 -18.94292 -18.70398 -17.82310 -17.28455 -17.01573 -16.84251 -16.69009 -16.46389 -16.25823 -16.11545 -15.73887 -15.57242 -15.47590 -15.29609 -14.87642 -14.66094 -14.43375 -14.17859 -13.96238 -13.68390 -13.46219 -13.37923 -13.34833 -13.04226 -12.79543 -12.55710 -12.46777 -12.38710 -12.29277 -12.12720 -12.07129 -11.66587 -11.28320 -11.25042 -10.82537 -10.69090 -10.38482 -10.12457 -9.74874 -9.04977 -8.48351 -6.16657 0.35284 0.68760 1.31795 1.35309 1.43792 1.52236 2.01709 2.16636 2.48087 2.82300 2.93812 3.14862 3.35129 3.40700 3.55786 3.63476 3.80620 3.89913 4.06476 4.23479 4.27329 4.28201 4.28873 4.35058 4.37757 4.49037 4.50809 4.54865 4.60539 4.70569 4.71088 4.73048 4.80093 4.94497 4.96884 4.98548 5.01800 5.10212 5.23318 5.35886 5.59695 5.68096 5.69755 5.80086 6.00086 6.14354 6.18733 6.38100 6.96688 7.00898 7.76395 8.74703 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.020729 B = 0.002507 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.461705 B =11168.003547 C =11791.281670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.371 6.371 3 C 0.101 3.899 4 C 0.495 3.505 5 O -0.556 6.556 6 N -0.705 5.705 7 C 0.173 3.827 8 C -0.060 4.060 9 C -0.169 4.169 10 C -0.069 4.069 11 C -0.234 4.234 12 C 0.113 3.887 13 O -0.231 6.231 14 C -0.412 4.412 15 H 0.103 0.897 16 C -0.022 4.022 17 N -0.920 5.920 18 Si 1.017 2.983 19 H -0.263 1.263 20 H -0.273 1.273 21 H -0.252 1.252 22 C -0.180 4.180 23 C -0.159 4.159 24 C 0.043 3.957 25 O -0.394 6.394 26 C 0.060 3.940 27 C -0.137 4.137 28 H 0.061 0.939 29 H 0.034 0.966 30 H 0.103 0.897 31 H 0.412 0.588 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.120 0.880 37 H 0.272 0.728 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.096 0.904 41 H 0.106 0.894 42 H 0.077 0.923 43 H 0.126 0.874 44 H 0.043 0.957 45 H 0.102 0.898 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.339 7.393 12.752 21.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.290 6.290 3 C 0.058 3.942 4 C 0.282 3.718 5 O -0.435 6.435 6 N -0.356 5.356 7 C 0.050 3.950 8 C -0.061 4.061 9 C -0.188 4.188 10 C -0.087 4.087 11 C -0.254 4.254 12 C 0.063 3.937 13 O -0.138 6.138 14 C -0.488 4.488 15 H 0.120 0.880 16 C -0.220 4.220 17 N -0.558 5.558 18 Si 0.836 3.164 19 H -0.188 1.188 20 H -0.198 1.198 21 H -0.176 1.176 22 C -0.200 4.200 23 C -0.197 4.197 24 C -0.033 4.033 25 O -0.312 6.312 26 C -0.016 4.016 27 C -0.174 4.174 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.121 0.879 31 H 0.248 0.752 32 H 0.084 0.916 33 H 0.108 0.892 34 H 0.166 0.834 35 H 0.166 0.834 36 H 0.138 0.862 37 H 0.081 0.919 38 H 0.126 0.874 39 H 0.097 0.903 40 H 0.114 0.886 41 H 0.124 0.876 42 H 0.095 0.905 43 H 0.144 0.856 44 H 0.061 0.939 45 H 0.121 0.879 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 14.946 8.049 13.060 21.418 hybrid contribution -1.136 -1.056 -1.041 1.868 sum 13.810 6.993 12.020 19.598 Atomic orbital electron populations 1.23022 0.79937 1.04228 1.00808 1.88008 1.20848 1.25338 1.94768 1.21906 0.96612 0.83715 0.91958 1.21547 0.77179 0.87787 0.85334 1.90587 1.51644 1.16275 1.85010 1.46146 1.63272 1.16419 1.09800 1.20099 0.99415 0.93260 0.82236 1.19431 0.93342 0.96653 0.96666 1.20993 0.99103 1.02456 0.96211 1.21162 0.96548 0.93784 0.97229 1.21387 0.95681 1.06039 1.02286 1.19852 0.87766 0.91434 0.94669 1.83956 1.33779 1.46433 1.49622 1.21795 0.99223 1.16679 1.11084 0.88000 1.26559 0.93547 1.00350 1.01501 1.70175 1.01944 1.41941 1.41758 0.84611 0.78587 0.77012 0.76191 1.18820 1.19795 1.17553 1.20193 1.00268 1.01144 0.98413 1.22587 1.02075 0.98178 0.96890 1.23064 0.80114 0.95652 1.04466 1.87881 1.22736 1.79222 1.41406 1.22707 1.00934 0.90365 0.87622 1.22239 0.89371 0.99805 1.06033 0.92063 0.94719 0.87851 0.75224 0.91621 0.89168 0.83425 0.83370 0.86213 0.91862 0.87433 0.90277 0.88580 0.87617 0.90473 0.85634 0.93907 0.87910 0.88523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.22 113.37 1.16 1.48 16 2 O -0.37 -7.89 9.85 -148.98 -1.47 -9.36 16 3 C 0.10 2.04 0.80 -11.42 -0.01 2.03 16 4 C 0.50 11.87 4.39 87.66 0.38 12.25 16 5 O -0.56 -15.87 13.04 -3.02 -0.04 -15.91 16 6 N -0.71 -16.60 4.80 -466.78 -2.24 -18.84 16 7 C 0.17 4.45 5.80 85.63 0.50 4.94 16 8 C -0.06 -1.84 5.25 -19.88 -0.10 -1.95 16 9 C -0.17 -4.64 9.70 22.30 0.22 -4.42 16 10 C -0.07 -2.13 10.04 22.25 0.22 -1.90 16 11 C -0.23 -9.50 9.14 22.39 0.20 -9.30 16 12 C 0.11 5.33 6.65 22.57 0.15 5.48 16 13 O -0.23 -13.45 9.76 -22.84 -0.22 -13.68 16 14 C -0.41 -23.23 9.45 67.92 0.64 -22.59 16 15 H 0.10 5.24 5.28 -2.91 -0.02 5.22 16 16 C -0.02 -1.22 5.49 84.84 0.47 -0.75 16 17 N -0.92 -55.48 13.67 21.61 0.30 -55.18 16 18 Si 1.02 41.75 29.55 68.60 2.03 43.77 16 19 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 20 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 21 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 22 C -0.18 -7.18 9.64 22.39 0.22 -6.96 16 23 C -0.16 -3.01 4.46 30.68 0.14 -2.87 16 24 C 0.04 0.87 6.54 72.01 0.47 1.34 16 25 O -0.39 -8.28 10.77 -148.98 -1.60 -9.88 16 26 C 0.06 1.04 6.60 72.01 0.48 1.51 16 27 C -0.14 -2.25 5.28 30.68 0.16 -2.09 16 28 H 0.06 1.05 6.80 -2.38 -0.02 1.04 16 29 H 0.03 0.80 6.54 -2.39 -0.02 0.78 16 30 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.41 9.38 8.08 -92.71 -0.75 8.64 16 32 H 0.07 1.83 8.08 -2.39 -0.02 1.81 16 33 H 0.09 2.12 8.08 -2.39 -0.02 2.10 16 34 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 35 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 36 H 0.12 4.97 5.70 -2.91 -0.02 4.96 16 37 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 38 H 0.11 4.38 8.06 -2.91 -0.02 4.35 16 39 H 0.08 1.49 6.88 -2.39 -0.02 1.48 16 40 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.08 1.89 5.19 -2.39 -0.01 1.88 16 43 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.04 0.85 7.12 -2.39 -0.02 0.83 16 45 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -70.34 371.28 2.30 -68.04 By element: Atomic # 1 Polarization: 34.56 SS G_CDS: 0.27 Total: 34.82 kcal Atomic # 6 Polarization: -29.07 SS G_CDS: 5.29 Total: -23.78 kcal Atomic # 7 Polarization: -72.07 SS G_CDS: -1.95 Total: -74.02 kcal Atomic # 8 Polarization: -45.50 SS G_CDS: -3.33 Total: -48.83 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.77 kcal Total: -70.34 2.30 -68.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647193386.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.304 kcal (2) G-P(sol) polarization free energy of solvation -70.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds