Wall clock time and date at job start Tue Mar 31 2020 18:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.47954 * 111.00036 * 2 1 4 4 C 1.53930 * 86.18249 * 222.41633 * 3 2 1 5 5 N 1.46899 * 113.73753 * 138.08031 * 4 3 2 6 6 C 1.46893 * 111.00032 * 176.90222 * 5 4 3 7 7 C 1.53242 * 109.34081 * 172.74535 * 6 5 4 8 8 N 1.47081 * 108.51912 * 53.82480 * 7 6 5 9 9 C 1.34785 * 120.87892 * 128.79581 * 8 7 6 10 10 O 1.21760 * 119.99656 * 354.09791 * 9 8 7 11 11 C 1.46233 * 119.99857 * 174.10384 * 9 8 7 12 12 S 1.75665 * 125.22833 * 337.62229 * 11 9 8 13 13 C 1.75475 * 92.08969 * 179.97438 * 12 11 9 14 14 C 1.32761 * 111.36510 * 359.97438 * 13 12 11 15 15 C 1.39551 * 125.22492 * 157.32176 * 11 9 8 16 16 C 1.40535 * 123.71538 * 0.02562 * 15 11 9 17 17 H 1.07995 * 120.00250 * 22.93144 * 16 15 11 18 18 C 1.40311 * 119.99898 * 202.92804 * 16 15 11 19 19 N 1.30644 * 119.99665 * 7.59345 * 18 16 15 20 20 Si 1.86797 * 119.99930 * 187.59707 * 18 16 15 21 21 H 1.48492 * 109.47421 * 60.00154 * 20 18 16 22 22 H 1.48504 * 109.46880 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46971 * 299.99553 * 20 18 16 24 24 C 1.47073 * 118.24079 * 308.81709 * 8 7 6 25 25 C 1.46894 * 110.99869 * 52.59451 * 5 4 3 26 26 C 1.48181 * 111.07084 * 260.56450 * 2 1 3 27 27 H 1.09007 * 109.46935 * 59.99999 * 1 2 3 28 28 H 1.09000 * 109.47209 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47201 * 300.00494 * 1 2 3 30 30 H 1.09002 * 113.76099 * 108.09494 * 3 2 1 31 31 H 1.09005 * 113.76079 * 336.73259 * 3 2 1 32 32 H 1.09005 * 113.73219 * 269.26146 * 4 3 2 33 33 H 1.09003 * 109.49792 * 52.78744 * 6 5 4 34 34 H 1.09004 * 109.49353 * 292.70498 * 6 5 4 35 35 H 1.08995 * 109.63307 * 173.53952 * 7 6 5 36 36 H 1.08998 * 109.63105 * 294.12242 * 7 6 5 37 37 H 1.08008 * 124.31395 * 180.02562 * 13 12 11 38 38 H 1.08004 * 122.78539 * 180.02562 * 14 13 12 39 39 H 0.96997 * 119.99547 * 179.97438 * 19 18 16 40 40 H 1.08997 * 109.63003 * 170.89100 * 24 8 7 41 41 H 1.08996 * 109.62943 * 291.47876 * 24 8 7 42 42 H 1.09001 * 109.49120 * 67.30149 * 25 5 4 43 43 H 1.08993 * 109.50045 * 307.22022 * 25 5 4 44 44 H 1.09007 * 113.76315 * 23.24324 * 26 2 1 45 45 H 1.09004 * 113.82747 * 251.81260 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0212 0.8792 -1.0360 5 7 3.2517 1.8180 -2.1421 6 6 4.2875 1.3136 -3.0534 7 6 4.3702 2.2254 -4.2823 8 7 4.5646 3.6096 -3.8247 9 6 5.5588 4.3702 -4.3245 10 8 6.3751 3.8823 -5.0848 11 6 5.6570 5.7813 -3.9536 12 16 4.3303 6.7674 -3.3591 13 6 5.3615 8.1795 -3.2112 14 6 6.6067 7.9103 -3.5848 15 6 6.8203 6.5498 -4.0118 16 6 8.0625 6.0532 -4.4423 17 1 8.1043 5.1847 -5.0829 18 6 9.2485 6.6858 -4.0400 19 7 9.2096 7.6413 -3.1499 20 14 10.8830 6.1618 -4.7770 21 1 10.8502 6.3633 -6.2478 22 1 11.9753 6.9790 -4.1902 23 1 11.1230 4.7268 -4.4791 24 6 3.6458 4.1417 -2.8069 25 6 3.5917 3.1544 -1.6362 26 6 2.0018 -0.2267 -1.3640 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 2.4460 1.6802 0.9483 31 1 1.3011 2.1197 -0.3941 32 1 3.9459 0.5067 -0.5952 33 1 4.0338 0.3013 -3.3681 34 1 5.2498 1.3052 -2.5413 35 1 5.2118 1.9242 -4.9058 36 1 3.4443 2.1552 -4.8532 37 1 5.0261 9.1443 -2.8602 38 1 7.3951 8.6483 -3.5668 39 1 10.0296 8.0784 -2.8715 40 1 4.0087 5.1074 -2.4551 41 1 2.6504 4.2556 -3.2360 42 1 4.5637 3.1205 -1.1439 43 1 2.8334 3.4772 -0.9229 44 1 1.3044 0.0405 -2.1580 45 1 2.4506 -1.2102 -1.5037 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650590088.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:33 Heat of formation + Delta-G solvation = 46.414838 kcal Electronic energy + Delta-G solvation = -27009.784820 eV Core-core repulsion = 23348.096655 eV Total energy + Delta-G solvation = -3661.688165 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.38229 -38.90153 -36.95733 -35.83482 -33.58317 -33.06938 -31.16488 -29.97077 -28.92733 -27.05113 -26.36665 -25.67958 -23.32314 -23.16009 -22.15159 -20.86700 -19.72631 -19.31889 -18.57831 -17.26409 -16.33831 -16.05664 -15.83358 -15.46925 -15.25188 -14.83844 -14.69764 -14.37036 -14.21548 -14.08784 -13.72403 -13.37613 -12.88443 -12.84365 -12.44097 -12.41287 -12.19901 -12.10186 -11.91581 -11.64794 -11.50235 -11.33371 -11.08017 -11.04424 -10.99371 -10.96126 -10.73066 -10.55835 -10.34506 -10.00313 -9.62055 -9.15673 -9.07737 -8.50463 -8.45646 -7.84590 -7.49636 -7.10481 -7.02231 -4.56954 2.15485 2.96213 2.98088 3.01801 3.10860 3.50587 3.59074 3.80116 3.82564 3.84125 4.00997 4.24850 4.39760 4.84077 4.88470 5.00865 5.12636 5.21606 5.24431 5.26327 5.34311 5.43638 5.47354 5.53667 5.59577 5.60557 5.63045 5.77243 5.89122 5.95111 6.03230 6.07130 6.13202 6.23981 6.36021 6.53521 6.77759 6.80735 7.02515 7.06951 7.16126 7.20735 7.32970 7.50068 7.70951 8.29232 8.39157 8.57307 8.73042 9.49842 9.84061 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017252 B = 0.003143 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.577970 B = 8906.994302 C = 9661.595931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 N -0.488 5.488 3 C 0.008 3.992 4 C 0.049 3.951 5 N -0.529 5.529 6 C 0.045 3.955 7 C 0.124 3.876 8 N -0.630 5.630 9 C 0.609 3.391 10 O -0.565 6.565 11 C -0.438 4.438 12 S -0.022 6.022 13 C -0.227 4.227 14 C -0.098 4.098 15 C 0.144 3.856 16 C -0.386 4.386 17 H 0.111 0.889 18 C 0.068 3.932 19 N -0.780 5.780 20 Si 0.926 3.074 21 H -0.258 1.258 22 H -0.276 1.276 23 H -0.259 1.259 24 C 0.103 3.897 25 C 0.045 3.955 26 C 0.015 3.985 27 H 0.037 0.963 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.039 0.961 35 H 0.091 0.909 36 H 0.060 0.940 37 H 0.135 0.865 38 H 0.146 0.854 39 H 0.288 0.712 40 H 0.118 0.882 41 H 0.060 0.940 42 H 0.040 0.960 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.601 -7.832 5.331 14.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 N -0.211 5.211 3 C -0.120 4.120 4 C -0.060 4.060 5 N -0.254 5.254 6 C -0.084 4.084 7 C 0.000 4.000 8 N -0.365 5.365 9 C 0.407 3.593 10 O -0.448 6.448 11 C -0.556 4.556 12 S 0.234 5.766 13 C -0.360 4.360 14 C -0.129 4.129 15 C 0.133 3.867 16 C -0.417 4.417 17 H 0.128 0.872 18 C -0.154 4.154 19 N -0.404 5.404 20 Si 0.749 3.251 21 H -0.183 1.183 22 H -0.201 1.201 23 H -0.183 1.183 24 C -0.023 4.023 25 C -0.083 4.083 26 C -0.114 4.114 27 H 0.056 0.944 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.057 0.943 35 H 0.110 0.890 36 H 0.078 0.922 37 H 0.153 0.847 38 H 0.163 0.837 39 H 0.099 0.901 40 H 0.134 0.866 41 H 0.079 0.921 42 H 0.058 0.942 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.778 -8.536 5.606 15.589 hybrid contribution 2.388 0.699 -0.407 2.521 sum -9.390 -7.837 5.199 13.290 Atomic orbital electron populations 1.22831 0.89436 1.02243 1.01187 1.68452 1.09267 1.18611 1.24741 1.24066 0.97040 0.91690 0.99251 1.23556 0.97313 0.93704 0.91403 1.62260 1.44608 1.02223 1.16329 1.22473 0.92981 0.98529 0.94431 1.21406 1.01779 0.81739 0.95034 1.47871 1.32858 1.12719 1.43082 1.16922 0.78766 0.84583 0.79005 1.90626 1.41509 1.74335 1.38296 1.22526 0.97749 0.96053 1.39286 1.82852 1.16664 1.03141 1.73950 1.25318 0.98764 1.01556 1.10373 1.21786 0.95226 0.97558 0.98364 1.17907 0.92045 0.89182 0.87552 1.20015 0.88820 1.10422 1.22418 0.87151 1.26383 1.02749 0.93058 0.93199 1.69650 1.31412 1.17635 1.21750 0.86042 0.78460 0.80078 0.80485 1.18265 1.20103 1.18346 1.22228 0.93883 0.98037 0.88144 1.22457 0.99890 0.88645 0.97311 1.24097 0.97081 0.99135 0.91061 0.94431 0.91301 0.91462 0.89434 0.90192 0.90777 0.90262 0.94289 0.89023 0.92185 0.84743 0.83672 0.90055 0.86565 0.92124 0.94193 0.90056 0.90149 0.89667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.06 9.65 60.07 0.58 0.52 16 2 N -0.49 -5.00 6.55 -246.54 -1.62 -6.62 16 3 C 0.01 0.09 6.39 -2.77 -0.02 0.07 16 4 C 0.05 0.55 3.42 -69.41 -0.24 0.31 16 5 N -0.53 -6.86 4.61 -227.75 -1.05 -7.90 16 6 C 0.04 0.62 5.60 -3.70 -0.02 0.60 16 7 C 0.12 2.06 6.61 -3.60 -0.02 2.04 16 8 N -0.63 -12.49 3.01 -174.16 -0.52 -13.01 16 9 C 0.61 14.97 7.53 -13.05 -0.10 14.87 16 10 O -0.56 -15.38 14.20 5.14 0.07 -15.30 16 11 C -0.44 -10.96 6.04 -35.88 -0.22 -11.17 16 12 S -0.02 -0.47 18.91 -107.50 -2.03 -2.50 16 13 C -0.23 -4.87 11.07 28.86 0.32 -4.55 16 14 C -0.10 -2.36 9.06 -39.12 -0.35 -2.72 16 15 C 0.14 3.81 5.69 -106.21 -0.60 3.21 16 16 C -0.39 -10.35 8.71 -37.94 -0.33 -10.68 16 17 H 0.11 3.12 5.99 -52.49 -0.31 2.80 16 18 C 0.07 1.64 5.42 -17.28 -0.09 1.54 16 19 N -0.78 -18.65 10.70 55.57 0.59 -18.06 16 20 Si 0.93 18.47 29.57 -169.99 -5.03 13.45 16 21 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 22 H -0.28 -5.20 7.11 56.52 0.40 -4.80 16 23 H -0.26 -5.27 7.11 56.52 0.40 -4.86 16 24 C 0.10 1.76 5.59 -3.60 -0.02 1.74 16 25 C 0.05 0.65 5.43 -3.70 -0.02 0.63 16 26 C 0.02 0.15 7.79 -2.64 -0.02 0.13 16 27 H 0.04 0.31 7.63 -51.93 -0.40 -0.09 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.08 0.80 7.44 -51.93 -0.39 0.42 16 32 H 0.07 0.88 8.11 -51.93 -0.42 0.46 16 33 H 0.08 0.92 8.11 -51.93 -0.42 0.50 16 34 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.09 1.65 7.04 -51.93 -0.37 1.28 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.13 2.46 8.06 -52.48 -0.42 2.03 16 38 H 0.15 3.51 6.28 -52.48 -0.33 3.18 16 39 H 0.29 6.20 8.29 -40.82 -0.34 5.86 16 40 H 0.12 2.18 3.65 -21.50 -0.08 2.10 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.08 0.98 6.57 -51.93 -0.34 0.64 16 44 H 0.08 0.81 7.63 -51.93 -0.40 0.41 16 45 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 362.80 15.07 5.47 5.47 Total: -1.00 -28.64 362.80 -11.66 -40.30 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -6.39 Total: 7.66 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -1.16 Total: -3.48 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: -2.60 Total: -45.59 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: 0.07 Total: -15.30 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.45 kcal Atomic # 16 Polarization: -0.47 SS G_CDS: -2.03 Total: -2.50 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.64 -11.66 -40.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650590088.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.716 kcal (2) G-P(sol) polarization free energy of solvation -28.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds