Wall clock time and date at job start Tue Mar 31 2020 18:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.47954 * 111.00036 * 2 1 4 4 C 1.53930 * 86.18249 * 222.41633 * 3 2 1 5 5 N 1.46899 * 113.73753 * 138.08031 * 4 3 2 6 6 C 1.46893 * 111.00032 * 176.90222 * 5 4 3 7 7 C 1.53242 * 109.34081 * 172.74535 * 6 5 4 8 8 N 1.47081 * 108.51912 * 53.82480 * 7 6 5 9 9 C 1.34785 * 120.87892 * 128.79581 * 8 7 6 10 10 O 1.21760 * 119.99656 * 354.09791 * 9 8 7 11 11 C 1.46233 * 119.99857 * 174.10384 * 9 8 7 12 12 S 1.75665 * 125.22833 * 337.62229 * 11 9 8 13 13 C 1.75475 * 92.08969 * 179.97438 * 12 11 9 14 14 C 1.32761 * 111.36510 * 359.97438 * 13 12 11 15 15 C 1.39551 * 125.22492 * 157.32176 * 11 9 8 16 16 C 1.40535 * 123.71538 * 0.02562 * 15 11 9 17 17 H 1.07995 * 120.00250 * 22.93144 * 16 15 11 18 18 C 1.40311 * 119.99898 * 202.92804 * 16 15 11 19 19 N 1.30644 * 119.99665 * 7.59345 * 18 16 15 20 20 Si 1.86797 * 119.99930 * 187.59707 * 18 16 15 21 21 H 1.48492 * 109.47421 * 60.00154 * 20 18 16 22 22 H 1.48504 * 109.46880 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46971 * 299.99553 * 20 18 16 24 24 C 1.47073 * 118.24079 * 308.81709 * 8 7 6 25 25 C 1.46894 * 110.99869 * 52.59451 * 5 4 3 26 26 C 1.48181 * 111.07084 * 260.56450 * 2 1 3 27 27 H 1.09007 * 109.46935 * 59.99999 * 1 2 3 28 28 H 1.09000 * 109.47209 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47201 * 300.00494 * 1 2 3 30 30 H 1.09002 * 113.76099 * 108.09494 * 3 2 1 31 31 H 1.09005 * 113.76079 * 336.73259 * 3 2 1 32 32 H 1.09005 * 113.73219 * 269.26146 * 4 3 2 33 33 H 1.09003 * 109.49792 * 52.78744 * 6 5 4 34 34 H 1.09004 * 109.49353 * 292.70498 * 6 5 4 35 35 H 1.08995 * 109.63307 * 173.53952 * 7 6 5 36 36 H 1.08998 * 109.63105 * 294.12242 * 7 6 5 37 37 H 1.08008 * 124.31395 * 180.02562 * 13 12 11 38 38 H 1.08004 * 122.78539 * 180.02562 * 14 13 12 39 39 H 0.96997 * 119.99547 * 179.97438 * 19 18 16 40 40 H 1.08997 * 109.63003 * 170.89100 * 24 8 7 41 41 H 1.08996 * 109.62943 * 291.47876 * 24 8 7 42 42 H 1.09001 * 109.49120 * 67.30149 * 25 5 4 43 43 H 1.08993 * 109.50045 * 307.22022 * 25 5 4 44 44 H 1.09007 * 113.76315 * 23.24324 * 26 2 1 45 45 H 1.09004 * 113.82747 * 251.81260 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0212 0.8792 -1.0360 5 7 3.2517 1.8180 -2.1421 6 6 4.2875 1.3136 -3.0534 7 6 4.3702 2.2254 -4.2823 8 7 4.5646 3.6096 -3.8247 9 6 5.5588 4.3702 -4.3245 10 8 6.3751 3.8823 -5.0848 11 6 5.6570 5.7813 -3.9536 12 16 4.3303 6.7674 -3.3591 13 6 5.3615 8.1795 -3.2112 14 6 6.6067 7.9103 -3.5848 15 6 6.8203 6.5498 -4.0118 16 6 8.0625 6.0532 -4.4423 17 1 8.1043 5.1847 -5.0829 18 6 9.2485 6.6858 -4.0400 19 7 9.2096 7.6413 -3.1499 20 14 10.8830 6.1618 -4.7770 21 1 10.8502 6.3633 -6.2478 22 1 11.9753 6.9790 -4.1902 23 1 11.1230 4.7268 -4.4791 24 6 3.6458 4.1417 -2.8069 25 6 3.5917 3.1544 -1.6362 26 6 2.0018 -0.2267 -1.3640 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 2.4460 1.6802 0.9483 31 1 1.3011 2.1197 -0.3941 32 1 3.9459 0.5067 -0.5952 33 1 4.0338 0.3013 -3.3681 34 1 5.2498 1.3052 -2.5413 35 1 5.2118 1.9242 -4.9058 36 1 3.4443 2.1552 -4.8532 37 1 5.0261 9.1443 -2.8602 38 1 7.3951 8.6483 -3.5668 39 1 10.0296 8.0784 -2.8715 40 1 4.0087 5.1074 -2.4551 41 1 2.6504 4.2556 -3.2360 42 1 4.5637 3.1205 -1.1439 43 1 2.8334 3.4772 -0.9229 44 1 1.3044 0.0405 -2.1580 45 1 2.4506 -1.2102 -1.5037 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650590088.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:32 Heat of formation + Delta-G solvation = 25.868534 kcal Electronic energy + Delta-G solvation = -27010.675774 eV Core-core repulsion = 23348.096655 eV Total energy + Delta-G solvation = -3662.579119 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.37269 -40.39125 -38.48125 -37.57728 -35.02994 -34.89098 -32.48068 -30.96177 -30.64745 -28.59392 -27.25381 -27.14293 -24.66279 -24.21752 -23.68425 -22.35602 -20.98191 -20.55416 -20.33470 -18.78794 -18.01733 -17.21271 -17.20337 -16.80795 -16.42557 -16.26310 -16.13811 -15.84313 -15.52497 -15.27626 -15.13534 -14.47063 -14.20710 -14.07501 -13.95160 -13.76410 -13.68958 -13.60511 -13.39667 -13.13400 -12.84926 -12.77390 -12.51867 -12.35680 -12.24160 -12.15282 -12.05309 -11.85738 -11.72455 -11.49481 -11.37702 -10.86799 -10.41265 -9.85450 -9.70914 -9.41267 -9.24301 -8.88362 -8.78142 -6.46818 0.32388 1.31221 1.34707 1.39052 1.43446 1.69650 2.00868 2.14221 2.23279 2.50075 2.76307 3.07617 3.29114 3.38836 3.81601 3.97898 4.03910 4.17045 4.23390 4.25021 4.28901 4.33878 4.40546 4.54572 4.55038 4.62371 4.68426 4.70798 4.76342 4.81341 4.85313 4.93522 4.98384 5.00039 5.04233 5.09213 5.30808 5.34356 5.40960 5.59089 5.75119 5.86971 5.92745 6.03639 6.05198 6.36472 6.55539 6.68725 6.87190 7.64821 8.06739 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017252 B = 0.003143 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.577970 B = 8906.994302 C = 9661.595931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 N -0.501 5.501 3 C 0.013 3.987 4 C 0.045 3.955 5 N -0.522 5.522 6 C 0.055 3.945 7 C 0.121 3.879 8 N -0.627 5.627 9 C 0.596 3.404 10 O -0.606 6.606 11 C -0.473 4.473 12 S 0.049 5.951 13 C -0.215 4.215 14 C -0.131 4.131 15 C 0.116 3.884 16 C -0.429 4.429 17 H 0.082 0.918 18 C 0.037 3.963 19 N -0.795 5.795 20 Si 0.988 3.012 21 H -0.259 1.259 22 H -0.249 1.249 23 H -0.269 1.269 24 C 0.101 3.899 25 C 0.054 3.946 26 C 0.023 3.977 27 H 0.040 0.960 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.109 0.891 34 H 0.019 0.981 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.172 0.828 38 H 0.139 0.861 39 H 0.300 0.700 40 H 0.101 0.899 41 H 0.078 0.922 42 H 0.020 0.980 43 H 0.111 0.889 44 H 0.084 0.916 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.609 -8.094 6.631 16.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 N -0.223 5.223 3 C -0.115 4.115 4 C -0.063 4.063 5 N -0.247 5.247 6 C -0.074 4.074 7 C -0.002 4.002 8 N -0.361 5.361 9 C 0.394 3.606 10 O -0.493 6.493 11 C -0.591 4.591 12 S 0.306 5.694 13 C -0.348 4.348 14 C -0.163 4.163 15 C 0.105 3.895 16 C -0.460 4.460 17 H 0.100 0.900 18 C -0.183 4.183 19 N -0.419 5.419 20 Si 0.807 3.193 21 H -0.183 1.183 22 H -0.173 1.173 23 H -0.194 1.194 24 C -0.024 4.024 25 C -0.075 4.075 26 C -0.106 4.106 27 H 0.059 0.941 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.085 0.915 33 H 0.127 0.873 34 H 0.037 0.963 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.190 0.810 38 H 0.157 0.843 39 H 0.112 0.888 40 H 0.118 0.882 41 H 0.096 0.904 42 H 0.038 0.962 43 H 0.129 0.871 44 H 0.102 0.898 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.854 -8.808 6.950 17.828 hybrid contribution 2.813 0.726 -0.760 3.003 sum -11.042 -8.081 6.190 15.018 Atomic orbital electron populations 1.22863 0.88242 1.02886 1.01655 1.68462 1.10544 1.18522 1.24806 1.24064 0.96568 0.91957 0.98959 1.23621 0.97577 0.93968 0.91183 1.62285 1.43474 1.02025 1.16928 1.22365 0.92568 0.99224 0.93250 1.21586 1.01714 0.80495 0.96414 1.47910 1.31849 1.13557 1.42793 1.17163 0.79430 0.85109 0.78935 1.90584 1.43305 1.75121 1.40248 1.23023 0.99626 0.97166 1.39281 1.82430 1.13724 1.00828 1.72374 1.25843 0.98031 1.03458 1.07508 1.21649 0.96498 0.96617 1.01497 1.18343 0.92606 0.90591 0.87994 1.19982 0.90763 1.10936 1.24287 0.90031 1.27020 1.05010 0.92982 0.93296 1.69635 1.32863 1.17739 1.21667 0.85162 0.75097 0.79323 0.79672 1.18334 1.17268 1.19378 1.22328 0.93581 0.98039 0.88452 1.22365 0.99916 0.88925 0.96286 1.24072 0.96453 0.98885 0.91155 0.94120 0.90639 0.90818 0.89098 0.89629 0.91537 0.87307 0.96308 0.91116 0.90281 0.81029 0.84326 0.88832 0.88208 0.90417 0.96205 0.87142 0.89821 0.88970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.10 9.65 127.69 1.23 1.13 16 2 N -0.50 -8.87 6.55 -933.93 -6.12 -14.99 16 3 C 0.01 0.23 6.39 86.41 0.55 0.78 16 4 C 0.05 0.90 3.42 46.48 0.16 1.06 16 5 N -0.52 -12.41 4.61 -874.48 -4.03 -16.44 16 6 C 0.05 1.46 5.60 86.39 0.48 1.94 16 7 C 0.12 4.00 6.61 86.35 0.57 4.57 16 8 N -0.63 -25.07 3.01 -823.11 -2.48 -27.54 16 9 C 0.60 30.47 7.53 86.32 0.65 31.12 16 10 O -0.61 -35.12 14.20 -4.54 -0.06 -35.19 16 11 C -0.47 -24.33 6.04 24.67 0.15 -24.18 16 12 S 0.05 1.98 18.91 -56.49 -1.07 0.91 16 13 C -0.22 -8.95 11.07 66.64 0.74 -8.21 16 14 C -0.13 -6.43 9.06 22.61 0.20 -6.22 16 15 C 0.12 6.39 5.69 -20.89 -0.12 6.27 16 16 C -0.43 -24.39 8.71 23.33 0.20 -24.19 16 17 H 0.08 4.99 5.99 -2.91 -0.02 4.97 16 18 C 0.04 1.84 5.42 85.37 0.46 2.30 16 19 N -0.79 -38.75 10.70 21.89 0.23 -38.52 16 20 Si 0.99 38.88 29.57 68.60 2.03 40.91 16 21 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 22 H -0.25 -8.65 7.11 99.48 0.71 -7.95 16 23 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 24 C 0.10 3.30 5.59 86.35 0.48 3.78 16 25 C 0.05 1.43 5.43 86.39 0.47 1.90 16 26 C 0.02 0.40 7.79 86.37 0.67 1.07 16 27 H 0.04 0.55 7.63 -2.38 -0.02 0.53 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.09 1.41 7.44 -2.38 -0.02 1.40 16 32 H 0.07 1.47 8.11 -2.38 -0.02 1.45 16 33 H 0.11 2.28 8.11 -2.39 -0.02 2.26 16 34 H 0.02 0.58 8.14 -2.38 -0.02 0.56 16 35 H 0.07 2.65 7.04 -2.39 -0.02 2.63 16 36 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.17 5.73 8.06 -2.91 -0.02 5.71 16 38 H 0.14 6.87 6.28 -2.91 -0.02 6.85 16 39 H 0.30 12.91 8.29 -92.71 -0.77 12.14 16 40 H 0.10 3.63 3.65 -21.74 -0.08 3.55 16 41 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.11 2.32 6.57 -2.39 -0.02 2.31 16 44 H 0.08 1.40 7.63 -2.38 -0.02 1.38 16 45 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -65.90 362.80 -3.66 -69.55 By element: Atomic # 1 Polarization: 27.24 SS G_CDS: 0.93 Total: 28.18 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: 6.91 Total: -6.87 kcal Atomic # 7 Polarization: -85.10 SS G_CDS: -12.39 Total: -97.49 kcal Atomic # 8 Polarization: -35.12 SS G_CDS: -0.06 Total: -35.19 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.91 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -1.07 Total: 0.91 kcal Total: -65.90 -3.66 -69.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650590088.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.420 kcal (2) G-P(sol) polarization free energy of solvation -65.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds