Wall clock time and date at job start Tue Mar 31 2020 18:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81405 * 109.47124 * 2 1 4 4 C 1.76203 * 102.99995 * 179.97438 * 3 2 1 5 5 C 1.39048 * 120.04227 * 0.02562 * 4 3 2 6 6 C 1.38111 * 120.05268 * 179.97438 * 5 4 3 7 7 C 1.38204 * 120.15340 * 359.97438 * 6 5 4 8 8 C 1.38916 * 120.08626 * 0.02562 * 7 6 5 9 9 N 1.39949 * 120.02694 * 179.97438 * 8 7 6 10 10 C 1.34776 * 119.99984 * 149.31721 * 9 8 7 11 11 O 1.21585 * 120.00142 * 355.08889 * 10 9 8 12 12 N 1.34775 * 120.00087 * 175.09737 * 10 9 8 13 13 C 1.46964 * 120.59511 * 184.65250 * 12 10 9 14 14 C 1.53364 * 108.63561 * 235.24581 * 13 12 10 15 15 N 1.46965 * 108.64005 * 310.57831 * 14 13 12 16 16 C 1.36935 * 120.59342 * 235.20775 * 15 14 13 17 17 H 1.07994 * 120.00205 * 148.00543 * 16 15 14 18 18 C 1.38817 * 119.99820 * 327.72099 * 16 15 14 19 19 N 1.31613 * 119.99949 * 349.71838 * 18 16 15 20 20 Si 1.86804 * 119.99603 * 169.71878 * 18 16 15 21 21 H 1.48500 * 109.47209 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.46938 * 120.00200 * 20 18 16 23 23 H 1.48504 * 109.46850 * 240.00245 * 20 18 16 24 24 C 1.46959 * 118.81028 * 55.47687 * 15 14 13 25 25 C 1.46965 * 120.59434 * 4.67911 * 12 10 9 26 26 C 1.38732 * 119.94480 * 0.27190 * 8 7 6 27 27 H 1.09006 * 109.47185 * 59.99707 * 1 2 3 28 28 H 1.09001 * 109.47004 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47226 * 300.00033 * 1 2 3 30 30 H 1.09005 * 109.47338 * 240.00240 * 2 1 3 31 31 H 1.09001 * 109.47185 * 119.99827 * 2 1 3 32 32 H 1.07997 * 119.97539 * 0.02562 * 5 4 3 33 33 H 1.08003 * 119.92292 * 179.97438 * 6 5 4 34 34 H 1.07993 * 119.95675 * 180.02562 * 7 6 5 35 35 H 0.96999 * 119.99717 * 329.30742 * 9 8 7 36 36 H 1.09002 * 109.60609 * 115.50197 * 13 12 10 37 37 H 1.09003 * 109.60848 * 354.99301 * 13 12 10 38 38 H 1.09007 * 109.61031 * 190.83081 * 14 13 12 39 39 H 1.09002 * 109.74872 * 70.40991 * 14 13 12 40 40 H 0.97008 * 119.99438 * 179.97438 * 19 18 16 41 41 H 1.08994 * 109.61310 * 64.26801 * 24 15 14 42 42 H 1.09001 * 109.61030 * 184.78235 * 24 15 14 43 43 H 1.08999 * 109.60779 * 244.50253 * 25 12 10 44 44 H 1.09004 * 109.60662 * 4.83306 * 25 12 10 45 45 H 1.07995 * 120.07307 * 179.70424 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 3.8855 1.5117 0.0008 5 6 4.4415 0.2373 0.0007 6 6 5.8138 0.0813 0.0007 7 6 6.6385 1.1904 0.0004 8 6 6.0895 2.4664 0.0005 9 7 6.9257 3.5886 0.0007 10 6 6.5236 4.7288 -0.5948 11 8 5.4745 4.7568 -1.2087 12 7 7.2844 5.8380 -0.5100 13 6 6.8118 7.1136 -1.0663 14 6 7.8630 7.6375 -2.0525 15 7 9.1803 7.5931 -1.4025 16 6 9.9537 8.7199 -1.3170 17 1 10.6091 8.8621 -0.4705 18 6 9.8995 9.6767 -2.3213 19 7 9.2672 9.4154 -3.4456 20 14 10.7242 11.3349 -2.0769 21 1 11.3620 11.3778 -0.7365 22 1 11.7581 11.5327 -3.1242 23 1 9.7073 12.4127 -2.1752 24 6 9.6553 6.3163 -0.8512 25 6 8.6017 5.7936 0.1401 26 6 4.7115 2.6275 0.0067 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.7998 -0.6314 -0.0003 33 1 6.2434 -0.9095 0.0011 34 1 7.7111 1.0648 0.0000 35 1 7.7947 3.5457 0.4295 36 1 6.6739 7.8351 -0.2610 37 1 5.8670 6.9579 -1.5872 38 1 7.6257 8.6650 -2.3285 39 1 7.8743 7.0123 -2.9454 40 1 9.2291 10.0842 -4.1473 41 1 9.7904 5.5968 -1.6586 42 1 10.6019 6.4709 -0.3334 43 1 8.5912 6.4211 1.0312 44 1 8.8376 4.7665 0.4187 45 1 4.2825 3.6186 0.0116 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669175545.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:48 Heat of formation + Delta-G solvation = 36.467823 kcal Electronic energy + Delta-G solvation = -26136.653342 eV Core-core repulsion = 22474.533843 eV Total energy + Delta-G solvation = -3662.119500 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.63617 -38.80410 -36.91404 -34.77921 -33.94390 -33.23023 -31.26197 -31.08088 -30.51231 -29.28322 -26.84991 -24.44377 -23.80102 -23.11235 -22.77982 -22.27427 -20.72939 -19.21126 -18.60468 -17.60887 -16.54564 -16.41738 -16.14424 -15.50749 -15.20220 -15.06518 -14.85502 -14.75279 -14.46271 -13.90040 -13.74344 -13.61957 -13.33971 -13.29682 -13.14996 -12.74686 -12.54559 -12.44833 -12.01257 -11.86895 -11.71343 -11.37313 -11.18492 -10.91089 -10.79267 -10.61224 -10.58335 -10.29517 -10.24825 -10.04619 -9.90461 -9.70237 -9.61520 -8.62715 -8.42026 -8.05623 -7.50163 -6.68958 -5.86751 -3.38881 1.09896 1.30747 1.33553 2.27458 2.76829 3.26549 3.32092 3.39511 3.41295 3.75522 3.99698 4.40628 4.52253 4.55765 4.75525 4.90686 5.02753 5.07552 5.12179 5.31786 5.32097 5.39092 5.40241 5.42660 5.62489 5.65739 5.68458 5.69221 5.77977 6.00840 6.15124 6.23250 6.26987 6.31279 6.34467 6.38750 6.47534 6.64839 6.77591 6.96646 7.13887 7.26313 7.58371 7.70145 8.08180 8.36642 8.73304 9.10517 9.70774 10.29354 11.20081 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.027073 B = 0.002253 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.975215 B =12422.558097 C =13152.239481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.114 4.114 3 S -0.112 6.112 4 C -0.064 4.064 5 C -0.161 4.161 6 C -0.079 4.079 7 C -0.160 4.160 8 C 0.197 3.803 9 N -0.690 5.690 10 C 0.701 3.299 11 O -0.579 6.579 12 N -0.608 5.608 13 C 0.103 3.897 14 C 0.158 3.842 15 N -0.590 5.590 16 C -0.259 4.259 17 H 0.067 0.933 18 C 0.006 3.994 19 N -0.902 5.902 20 Si 0.907 3.093 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.288 1.288 24 C 0.131 3.869 25 C 0.092 3.908 26 C -0.105 4.105 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.121 0.879 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.407 0.593 36 H 0.061 0.939 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.024 0.976 40 H 0.256 0.744 41 H 0.024 0.976 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.061 0.939 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.185 -19.981 9.774 24.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.262 4.262 3 S 0.130 5.870 4 C -0.177 4.177 5 C -0.186 4.186 6 C -0.099 4.099 7 C -0.183 4.183 8 C 0.099 3.901 9 N -0.339 5.339 10 C 0.403 3.597 11 O -0.457 6.457 12 N -0.343 5.343 13 C -0.021 4.021 14 C 0.032 3.968 15 N -0.313 5.313 16 C -0.388 4.388 17 H 0.084 0.916 18 C -0.193 4.193 19 N -0.545 5.545 20 Si 0.736 3.264 21 H -0.202 1.202 22 H -0.216 1.216 23 H -0.214 1.214 24 C 0.004 3.996 25 C -0.033 4.033 26 C -0.131 4.131 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.138 0.862 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.245 0.755 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.120 0.880 39 H 0.042 0.958 40 H 0.066 0.934 41 H 0.041 0.959 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.695 -18.725 9.172 23.906 hybrid contribution 1.905 -0.338 0.169 1.942 sum -9.790 -19.063 9.341 23.377 Atomic orbital electron populations 1.21512 0.91868 1.02805 1.03410 1.23605 1.00430 0.96728 1.05480 1.85714 0.97889 1.10853 1.92497 1.21523 0.96648 0.95872 1.03668 1.21024 0.95795 0.95239 1.06530 1.20739 0.92672 0.98128 0.98411 1.20859 1.00155 0.90779 1.06548 1.17391 0.89563 0.85846 0.97293 1.42934 1.21017 1.10550 1.59395 1.15877 0.83932 0.80149 0.79751 1.90898 1.24471 1.83587 1.46697 1.47330 1.18237 1.08657 1.60083 1.22494 0.99703 0.81682 0.98197 1.21231 0.82667 1.01898 0.91035 1.43949 1.15544 1.04118 1.67701 1.19209 1.20792 0.96391 1.02444 0.91560 1.25244 0.99452 1.00007 0.94623 1.69967 1.45538 1.33951 1.05057 0.86161 0.78881 0.83739 0.77580 1.20181 1.21589 1.21443 1.21358 0.94395 0.89507 0.94358 1.22405 0.84024 0.99564 0.97283 1.20849 0.91362 0.98946 1.01973 0.91457 0.90854 0.91546 0.89447 0.89516 0.86155 0.85511 0.85523 0.75474 0.92109 0.89878 0.88045 0.95766 0.93399 0.95857 0.91391 0.91251 0.92117 0.83613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.92 37.16 0.37 -0.47 16 2 C -0.11 -0.87 5.05 37.16 0.19 -0.68 16 3 S -0.11 -1.32 21.92 -107.50 -2.36 -3.68 16 4 C -0.06 -0.84 6.11 -39.06 -0.24 -1.08 16 5 C -0.16 -1.74 9.36 -39.33 -0.37 -2.11 16 6 C -0.08 -0.79 10.03 -39.64 -0.40 -1.19 16 7 C -0.16 -1.79 9.95 -39.34 -0.39 -2.18 16 8 C 0.20 2.77 6.32 -83.72 -0.53 2.24 16 9 N -0.69 -9.81 5.26 -14.24 -0.07 -9.88 16 10 C 0.70 12.65 8.06 -86.92 -0.70 11.95 16 11 O -0.58 -12.27 13.26 5.29 0.07 -12.20 16 12 N -0.61 -10.98 2.95 -177.94 -0.52 -11.50 16 13 C 0.10 2.06 6.60 -3.60 -0.02 2.04 16 14 C 0.16 3.75 5.45 -3.60 -0.02 3.73 16 15 N -0.59 -14.17 2.95 -171.77 -0.51 -14.68 16 16 C -0.26 -6.78 9.57 -15.06 -0.14 -6.92 16 17 H 0.07 1.69 7.85 -52.49 -0.41 1.28 16 18 C 0.01 0.16 5.05 -17.43 -0.09 0.07 16 19 N -0.90 -25.59 11.06 55.49 0.61 -24.97 16 20 Si 0.91 21.05 29.57 -169.99 -5.03 16.02 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 24 C 0.13 2.54 6.70 -3.37 -0.02 2.51 16 25 C 0.09 1.45 6.58 -3.37 -0.02 1.42 16 26 C -0.11 -1.61 8.41 -39.18 -0.33 -1.94 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.62 7.75 -51.92 -0.40 0.22 16 31 H 0.09 0.58 7.75 -51.92 -0.40 0.18 16 32 H 0.12 1.01 5.87 -52.49 -0.31 0.70 16 33 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 34 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 35 H 0.41 4.58 6.27 -40.82 -0.26 4.32 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.08 1.69 6.99 -51.93 -0.36 1.32 16 38 H 0.10 2.65 6.07 -51.92 -0.32 2.34 16 39 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 1.23 7.93 -51.93 -0.41 0.81 16 43 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.06 0.72 5.60 -51.93 -0.29 0.43 16 45 H 0.15 2.58 6.22 -52.49 -0.33 2.25 16 LS Contribution 371.18 15.07 5.59 5.59 Total: -1.00 -31.87 371.18 -11.36 -43.23 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -6.43 Total: 4.68 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: -2.72 Total: 7.39 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: -0.49 Total: -61.04 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.07 Total: -12.20 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Atomic # 16 Polarization: -1.32 SS G_CDS: -2.36 Total: -3.68 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.87 -11.36 -43.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669175545.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.698 kcal (2) G-P(sol) polarization free energy of solvation -31.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds