Wall clock time and date at job start Tue Mar 31 2020 19:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34637 * 117.00401 * 2 1 4 4 O 1.21518 * 119.99532 * 359.97438 * 3 2 1 5 5 N 1.34770 * 120.00063 * 179.97438 * 3 2 1 6 6 C 1.46501 * 119.99571 * 179.97438 * 5 3 2 7 7 C 1.50705 * 109.46816 * 179.97438 * 6 5 3 8 8 O 1.21271 * 119.99981 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99770 * 180.02562 * 7 6 5 10 10 C 1.46499 * 120.00053 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47367 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.52920 * 304.92051 * 11 10 9 13 13 C 1.53201 * 109.49716 * 65.00110 * 11 10 9 14 14 N 1.46916 * 108.77574 * 174.58458 * 13 11 10 15 15 C 1.36948 * 120.63003 * 126.41210 * 14 13 11 16 16 H 1.07999 * 119.99629 * 332.61809 * 15 14 13 17 17 C 1.38810 * 119.99620 * 152.61555 * 15 14 13 18 18 N 1.31624 * 119.99475 * 159.35579 * 17 15 14 19 19 Si 1.86795 * 120.00426 * 339.35173 * 17 15 14 20 20 H 1.48510 * 109.46775 * 92.91913 * 19 17 15 21 21 H 1.48497 * 109.47105 * 212.91387 * 19 17 15 22 22 H 1.48496 * 109.47244 * 332.91830 * 19 17 15 23 23 C 1.46926 * 118.74332 * 306.39410 * 14 13 11 24 24 C 1.53190 * 108.77851 * 53.60529 * 23 14 13 25 25 C 1.53040 * 109.49922 * 184.83609 * 11 10 9 26 26 F 1.39906 * 109.45714 * 58.66528 * 25 11 10 27 27 F 1.39897 * 109.46225 * 298.70631 * 25 11 10 28 28 H 1.09004 * 109.47714 * 300.00397 * 1 2 3 29 29 H 1.08998 * 109.47199 * 60.00192 * 1 2 3 30 30 H 1.09003 * 109.47562 * 180.02562 * 1 2 3 31 31 H 0.96998 * 120.00349 * 359.97438 * 5 3 2 32 32 H 1.09003 * 109.46998 * 60.00526 * 6 5 3 33 33 H 1.08999 * 109.47537 * 300.00209 * 6 5 3 34 34 H 0.96999 * 120.00553 * 359.97438 * 9 7 6 35 35 H 1.09001 * 109.47240 * 59.99673 * 10 9 7 36 36 H 1.08999 * 109.46994 * 300.00143 * 10 9 7 37 37 H 1.08998 * 109.58341 * 54.79749 * 13 11 10 38 38 H 1.08995 * 109.58231 * 294.37495 * 13 11 10 39 39 H 0.96993 * 120.00125 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.58736 * 173.40134 * 23 14 13 41 41 H 1.09001 * 109.58171 * 293.81862 * 23 14 13 42 42 H 1.08998 * 109.49355 * 65.32006 * 24 23 14 43 43 H 1.08993 * 109.49954 * 185.41968 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2700 0.0005 6 6 4.0742 2.5754 0.0000 7 6 5.5683 2.3779 0.0013 8 8 6.0317 1.2572 0.0022 9 7 6.3893 3.4467 0.0016 10 6 7.8416 3.2548 0.0024 11 6 8.5363 4.6180 0.0020 12 1 8.1781 5.2091 -0.8409 13 6 8.2240 5.3514 1.3102 14 7 9.0005 6.5979 1.3505 15 6 8.3804 7.7996 1.5673 16 1 7.3479 7.9339 1.2804 17 6 9.0789 8.8447 2.1560 18 7 8.6598 10.0834 2.0058 19 14 10.6136 8.4934 3.1613 20 1 11.8110 8.5954 2.2887 21 1 10.7196 9.4817 4.2646 22 1 10.5303 7.1240 3.7296 23 6 10.4550 6.5310 1.1540 24 6 10.7424 5.7844 -0.1524 25 6 10.0490 4.4204 -0.1188 26 9 10.3353 3.7229 -1.2974 27 9 10.5128 3.6888 0.9797 28 1 -0.3635 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.9374 0.4565 0.0013 32 1 3.7810 3.1329 0.8895 33 1 3.7817 3.1319 -0.8905 34 1 6.0186 4.3431 0.0006 35 1 8.1350 2.6976 -0.8873 36 1 8.1340 2.6979 0.8926 37 1 8.4992 4.7220 2.1565 38 1 7.1597 5.5822 1.3546 39 1 9.1476 10.8137 2.4174 40 1 10.8627 7.5402 1.0955 41 1 10.9121 5.9978 1.9877 42 1 10.3634 6.3645 -0.9938 43 1 11.8176 5.6433 -0.2619 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699889651.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:07 Heat of formation + Delta-G solvation = -188.511121 kcal Electronic energy + Delta-G solvation = -29601.919217 eV Core-core repulsion = 24933.061497 eV Total energy + Delta-G solvation = -4668.857719 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.149 amu Computer time = 2.71 seconds Orbital eigenvalues (eV) -48.77847 -46.72772 -40.83754 -39.91249 -37.82835 -36.92702 -35.44750 -34.78782 -32.83416 -31.50503 -30.73735 -29.13160 -27.37768 -25.78686 -25.12771 -22.64667 -21.99606 -21.60714 -20.85299 -19.96337 -19.41515 -17.48772 -17.34344 -17.13287 -16.96289 -16.78593 -16.54191 -15.95433 -15.74829 -15.71736 -15.19668 -14.89546 -14.63994 -14.35277 -14.06114 -13.72818 -13.61827 -13.38570 -13.33158 -13.13292 -12.98178 -12.72478 -12.44923 -12.37489 -12.23892 -12.02489 -11.93622 -11.74603 -11.08673 -11.05846 -10.97152 -10.81105 -10.46221 -10.34666 -10.21189 -9.94530 -9.66131 -9.62126 -9.28953 -8.83820 -7.26790 -6.12423 -3.52483 1.73783 2.27415 2.51225 2.88763 3.19114 3.38654 3.40503 3.94377 3.96059 4.27532 4.33419 4.37740 4.43548 4.63683 4.75647 4.82648 4.89957 4.94939 4.98482 5.05971 5.16925 5.18713 5.22407 5.40700 5.60311 5.71178 5.76132 5.80127 5.91099 6.01088 6.02763 6.11321 6.14254 6.30188 6.34792 6.55564 7.05089 7.17782 7.70478 7.85441 7.99600 8.12708 8.69519 9.50844 9.83760 11.02502 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.015061 B = 0.002682 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.647414 B =10436.653803 C =11835.018807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.370 6.370 3 C 0.650 3.350 4 O -0.572 6.572 5 N -0.698 5.698 6 C 0.117 3.883 7 C 0.511 3.489 8 O -0.538 6.538 9 N -0.715 5.715 10 C 0.125 3.875 11 C -0.158 4.158 12 H 0.109 0.891 13 C 0.155 3.845 14 N -0.603 5.603 15 C -0.270 4.270 16 H 0.090 0.910 17 C 0.029 3.971 18 N -0.901 5.901 19 Si 0.878 3.122 20 H -0.287 1.287 21 H -0.300 1.300 22 H -0.268 1.268 23 C 0.124 3.876 24 C -0.172 4.172 25 C 0.302 3.698 26 F -0.208 7.208 27 F -0.199 7.199 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.419 0.581 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.409 0.591 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.038 0.962 38 H 0.076 0.924 39 H 0.265 0.735 40 H 0.087 0.913 41 H 0.039 0.961 42 H 0.097 0.903 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.891 -16.369 -5.607 19.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.284 6.284 3 C 0.403 3.597 4 O -0.460 6.460 5 N -0.360 5.360 6 C -0.009 4.009 7 C 0.296 3.704 8 O -0.415 6.415 9 N -0.367 5.367 10 C 0.001 3.999 11 C -0.179 4.179 12 H 0.127 0.873 13 C 0.028 3.972 14 N -0.326 5.326 15 C -0.398 4.398 16 H 0.107 0.893 17 C -0.171 4.171 18 N -0.542 5.542 19 Si 0.708 3.292 20 H -0.214 1.214 21 H -0.228 1.228 22 H -0.193 1.193 23 C -0.001 4.001 24 C -0.212 4.212 25 C 0.265 3.735 26 F -0.189 7.189 27 F -0.180 7.180 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.121 0.879 31 H 0.257 0.743 32 H 0.125 0.875 33 H 0.124 0.876 34 H 0.245 0.755 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.056 0.944 38 H 0.095 0.905 39 H 0.075 0.925 40 H 0.105 0.895 41 H 0.057 0.943 42 H 0.115 0.885 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.924 -16.525 -5.542 19.146 hybrid contribution 0.994 -0.009 0.520 1.122 sum -6.930 -16.535 -5.021 18.618 Atomic orbital electron populations 1.23227 0.74092 1.03580 1.02892 1.86247 1.24378 1.30762 1.87010 1.17959 0.83033 0.82330 0.76402 1.91032 1.64632 1.34781 1.55601 1.44172 1.03302 1.10390 1.78166 1.21033 0.89116 0.84932 1.05837 1.20324 0.88515 0.85106 0.76467 1.90723 1.77308 1.23665 1.49790 1.45804 1.06855 1.09431 1.74620 1.21363 0.78553 0.96469 1.03466 1.22994 0.92258 0.97422 1.05250 0.87306 1.20960 0.97080 0.87580 0.91583 1.44388 1.01694 1.03206 1.83325 1.18864 0.98761 0.86499 1.35689 0.89254 1.25275 0.98158 0.95183 0.98484 1.69820 1.41288 0.98204 1.44924 0.87039 0.83296 0.78027 0.80866 1.21417 1.22787 1.19269 1.21416 0.86119 0.99861 0.92753 1.23083 1.00933 0.93251 1.03959 1.20942 0.94311 0.87109 0.71122 1.92979 1.94966 1.81865 1.49111 1.92974 1.90453 1.79831 1.54742 0.91693 0.91723 0.87871 0.74260 0.87466 0.87620 0.75467 0.90562 0.90300 0.94399 0.90534 0.92478 0.89537 0.94336 0.88477 0.89987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 55. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.38 10.56 101.05 1.07 1.45 16 2 O -0.37 -3.68 10.61 -40.31 -0.43 -4.11 16 3 C 0.65 7.51 8.75 54.05 0.47 7.98 16 4 O -0.57 -8.02 16.13 -19.29 -0.31 -8.33 16 5 N -0.70 -7.11 5.53 -66.46 -0.37 -7.48 16 6 C 0.12 1.06 6.15 -5.19 -0.03 1.03 16 7 C 0.51 5.58 7.90 -10.98 -0.09 5.49 16 8 O -0.54 -7.59 15.67 5.56 0.09 -7.50 16 9 N -0.71 -7.40 5.33 -60.30 -0.32 -7.72 16 10 C 0.13 1.57 4.83 -4.04 -0.02 1.55 16 11 C -0.16 -2.20 2.03 -90.50 -0.18 -2.39 16 12 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 13 C 0.15 2.58 5.40 -3.71 -0.02 2.56 16 14 N -0.60 -12.68 2.77 -172.32 -0.48 -13.15 16 15 C -0.27 -6.80 10.04 -15.05 -0.15 -6.95 16 16 H 0.09 2.36 8.06 -52.49 -0.42 1.94 16 17 C 0.03 0.78 5.23 -17.43 -0.09 0.69 16 18 N -0.90 -25.87 13.97 55.49 0.78 -25.10 16 19 Si 0.88 20.89 24.34 -169.99 -4.14 16.75 16 20 H -0.29 -6.53 6.62 56.52 0.37 -6.16 16 21 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 22 H -0.27 -6.31 6.64 56.52 0.38 -5.93 16 23 C 0.12 2.46 4.00 -3.71 -0.01 2.44 16 24 C -0.17 -2.76 5.62 -26.61 -0.15 -2.91 16 25 C 0.30 4.64 1.63 -26.69 -0.04 4.60 16 26 F -0.21 -3.15 16.41 2.25 0.04 -3.12 16 27 F -0.20 -3.31 15.73 2.25 0.04 -3.27 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.42 4.17 7.55 -40.82 -0.31 3.86 16 32 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.41 3.50 7.70 -40.82 -0.31 3.18 16 35 H 0.08 0.99 7.63 -51.93 -0.40 0.60 16 36 H 0.08 1.08 7.97 -51.93 -0.41 0.66 16 37 H 0.04 0.66 7.92 -51.93 -0.41 0.24 16 38 H 0.08 1.17 7.13 -51.93 -0.37 0.80 16 39 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.09 1.86 4.49 -51.93 -0.23 1.63 16 41 H 0.04 0.78 6.85 -51.93 -0.36 0.42 16 42 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16 43 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 357.73 15.07 5.39 5.39 Total: -1.00 -32.39 357.73 -4.77 -37.16 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -5.80 Total: 4.94 kcal Atomic # 6 Polarization: 14.80 SS G_CDS: 0.75 Total: 15.54 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: -0.39 Total: -53.45 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.65 Total: -19.94 kcal Atomic # 9 Polarization: -6.46 SS G_CDS: 0.07 Total: -6.39 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.14 Total: 16.75 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.39 -4.77 -37.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699889651.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.354 kcal (2) G-P(sol) polarization free energy of solvation -32.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.71 seconds