Wall clock time and date at job start Tue Mar 31 2020 18:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 119.99884 * 2 1 4 4 C 1.53000 * 109.46986 * 269.99545 * 3 2 1 5 5 H 1.08991 * 109.47114 * 60.00204 * 4 3 2 6 6 O 1.42901 * 109.47341 * 300.00159 * 4 3 2 7 7 C 1.52996 * 109.47213 * 180.02562 * 4 3 2 8 8 N 1.46903 * 109.47257 * 185.00128 * 7 4 3 9 9 C 1.46902 * 111.00100 * 179.97438 * 8 7 4 10 10 C 1.50698 * 109.46872 * 179.97438 * 9 8 7 11 11 O 1.21291 * 120.00415 * 0.02562 * 10 9 8 12 12 N 1.34783 * 119.99542 * 179.97438 * 10 9 8 13 13 C 1.37095 * 119.99719 * 179.97438 * 12 10 9 14 14 H 1.08004 * 120.00587 * 0.02562 * 13 12 10 15 15 C 1.38950 * 119.99938 * 179.97438 * 13 12 10 16 16 N 1.31405 * 120.00107 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99970 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47166 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46986 * 120.00263 * 17 15 13 20 20 H 1.48502 * 109.47561 * 240.00547 * 17 15 13 21 21 C 1.34777 * 119.99858 * 179.97438 * 2 1 3 22 22 O 1.21279 * 120.00166 * 180.02562 * 21 2 1 23 23 C 1.50706 * 119.99762 * 0.02562 * 21 2 1 24 24 H 1.08996 * 115.55128 * 34.33271 * 23 21 2 25 25 C 1.53001 * 117.49756 * 248.61806 * 23 21 2 26 26 C 1.52999 * 59.99986 * 252.51526 * 25 23 21 27 27 F 1.39899 * 117.49723 * 252.51260 * 26 25 23 28 28 F 1.39901 * 117.52253 * 107.48210 * 26 25 23 29 29 H 1.08999 * 109.47441 * 270.00307 * 1 2 3 30 30 H 1.09005 * 109.47121 * 30.00515 * 1 2 3 31 31 H 1.08997 * 109.47160 * 150.00168 * 1 2 3 32 32 H 1.09000 * 109.47710 * 29.99936 * 3 2 1 33 33 H 1.09000 * 109.46883 * 149.99979 * 3 2 1 34 34 H 0.96704 * 113.99924 * 300.00429 * 6 4 3 35 35 H 1.08999 * 109.47012 * 304.99801 * 7 4 3 36 36 H 1.08998 * 109.47407 * 64.99879 * 7 4 3 37 37 H 1.00902 * 110.99827 * 303.94937 * 8 7 4 38 38 H 1.09003 * 109.46797 * 299.99978 * 9 8 7 39 39 H 1.08994 * 109.47190 * 59.99909 * 9 8 7 40 40 H 0.97001 * 120.00126 * 359.97438 * 12 10 9 41 41 H 0.96998 * 120.00095 * 179.97438 * 16 15 13 42 42 H 1.09004 * 117.49834 * 0.02562 * 25 23 21 43 43 H 1.08997 * 117.49999 * 145.02096 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 1 1.5002 1.8406 -1.9563 6 8 3.2249 0.7144 -2.1161 7 6 3.2181 3.0350 -1.4426 8 7 3.3584 3.5194 -2.8223 9 6 4.0897 4.7929 -2.8613 10 6 4.2142 5.2570 -4.2897 11 8 3.7400 4.5926 -5.1868 12 7 4.8516 6.4110 -4.5701 13 6 4.9654 6.8330 -5.8695 14 1 4.5439 6.2410 -6.6685 15 6 5.6221 8.0229 -6.1585 16 7 6.1345 8.7435 -5.1865 17 14 5.7776 8.5975 -7.9291 18 1 5.1216 7.6143 -8.8282 19 1 5.1204 9.9207 -8.0797 20 1 7.2141 8.7147 -8.2872 21 6 2.1389 -1.1672 0.0005 22 8 3.3517 -1.1673 0.0010 23 6 1.3853 -2.4723 0.0005 24 1 0.4472 -2.4735 -0.5545 25 6 1.4600 -3.3312 1.2645 26 6 2.2074 -3.7627 0.0011 27 9 1.6972 -4.8539 -0.7103 28 9 3.6011 -3.6407 0.0010 29 1 -0.3634 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6085 2.0284 0.5138 33 1 3.1499 1.1383 0.5138 34 1 4.0874 0.5459 -1.7125 35 1 2.6710 3.7707 -0.8531 36 1 4.2063 2.8836 -1.0083 37 1 3.8056 2.8273 -3.4048 38 1 3.5483 5.5406 -2.2818 39 1 5.0839 4.6541 -2.4368 40 1 5.2299 6.9429 -3.8525 41 1 6.5932 9.5740 -5.3883 42 1 2.0539 -2.9521 2.0962 43 1 0.5709 -3.8975 1.5415 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700941373.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:23 Heat of formation + Delta-G solvation = -175.610534 kcal Electronic energy + Delta-G solvation = -28499.848117 eV Core-core repulsion = 23831.549809 eV Total energy + Delta-G solvation = -4668.298308 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.149 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.02347 -47.66242 -40.52945 -38.47507 -37.81111 -36.07972 -35.71978 -34.67051 -33.75357 -31.23549 -30.74241 -27.94912 -27.02742 -25.61496 -24.22360 -23.16437 -22.75730 -21.67460 -19.77643 -19.23730 -18.67702 -17.88404 -17.41448 -17.13827 -16.72852 -16.41934 -16.34911 -15.92136 -15.66706 -15.32054 -14.83959 -14.48939 -14.42428 -14.32653 -14.22681 -13.92559 -13.81327 -13.69854 -13.44725 -13.37434 -13.10901 -12.94317 -12.78168 -12.54627 -12.08104 -11.77013 -11.72659 -11.54911 -11.50231 -11.17235 -11.03191 -10.60618 -10.42124 -10.32825 -10.21264 -10.13668 -9.50540 -8.98342 -8.43723 -8.05892 -7.94354 -6.40385 -3.80982 1.83476 2.30210 2.56187 2.83554 3.17662 3.28056 3.35798 3.65540 3.68111 3.92414 4.03453 4.12541 4.17881 4.26025 4.37996 4.62426 4.74128 4.82264 4.83149 4.95002 5.01082 5.04259 5.07684 5.18925 5.22071 5.24792 5.27288 5.38426 5.58884 5.77813 5.95186 5.97365 5.99049 6.27558 6.85844 7.19735 7.57043 7.63101 7.70199 7.74135 8.08310 8.63068 9.19697 9.55939 10.07667 10.77521 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.027905 B = 0.001762 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.160171 B =15886.824783 C =16252.312756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.603 5.603 3 C 0.084 3.916 4 C 0.094 3.906 5 H 0.108 0.892 6 O -0.550 6.550 7 C 0.030 3.970 8 N -0.664 5.664 9 C 0.050 3.950 10 C 0.441 3.559 11 O -0.581 6.581 12 N -0.565 5.565 13 C -0.298 4.298 14 H 0.104 0.896 15 C 0.021 3.979 16 N -0.902 5.902 17 Si 0.930 3.070 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.282 1.282 21 C 0.549 3.451 22 O -0.515 6.515 23 C -0.196 4.196 24 H 0.150 0.850 25 C -0.148 4.148 26 C 0.231 3.769 27 F -0.156 7.156 28 F -0.137 7.137 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.375 0.625 35 H 0.079 0.921 36 H 0.031 0.969 37 H 0.357 0.643 38 H 0.085 0.915 39 H 0.043 0.957 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.127 0.873 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.346 -20.395 19.759 30.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.335 5.335 3 C -0.039 4.039 4 C 0.033 3.967 5 H 0.126 0.874 6 O -0.355 6.355 7 C -0.101 4.101 8 N -0.298 5.298 9 C -0.082 4.082 10 C 0.226 3.774 11 O -0.465 6.465 12 N -0.202 5.202 13 C -0.428 4.428 14 H 0.121 0.879 15 C -0.181 4.181 16 N -0.544 5.544 17 Si 0.757 3.243 18 H -0.192 1.192 19 H -0.208 1.208 20 H -0.208 1.208 21 C 0.335 3.665 22 O -0.390 6.390 23 C -0.218 4.218 24 H 0.167 0.833 25 C -0.187 4.187 26 C 0.194 3.806 27 F -0.136 7.136 28 F -0.117 7.117 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.223 0.777 35 H 0.097 0.903 36 H 0.049 0.951 37 H 0.177 0.823 38 H 0.103 0.897 39 H 0.061 0.939 40 H 0.225 0.775 41 H 0.080 0.920 42 H 0.146 0.854 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -13.015 -20.399 18.707 30.585 hybrid contribution 1.619 0.524 0.024 1.702 sum -11.396 -19.875 18.732 29.593 Atomic orbital electron populations 1.21914 0.79005 1.03879 1.02070 1.47521 1.07108 1.05446 1.73455 1.22267 0.98603 0.84807 0.98266 1.22367 0.96132 0.86580 0.91650 0.87423 1.86616 1.33337 1.59099 1.56458 1.22578 0.98916 0.96684 0.91911 1.60018 1.56265 1.05564 1.07946 1.21683 0.96590 0.92827 0.97137 1.19809 0.84164 0.83728 0.89679 1.90535 1.51729 1.56625 1.47604 1.41869 1.49472 1.19628 1.09196 1.19764 1.33531 1.04978 0.84479 0.87858 1.25266 0.96804 0.96219 0.99762 1.69618 1.37621 1.15166 1.32001 0.85793 0.77900 0.78567 0.82044 1.19202 1.20762 1.20777 1.19085 0.87227 0.83707 0.76486 1.90759 1.13154 1.86716 1.48400 1.23687 1.02802 0.91235 1.04107 0.83292 1.24278 1.03161 0.99233 0.91988 1.19443 0.76736 0.85752 0.98688 1.93059 1.85987 1.54884 1.79715 1.93141 1.26365 1.95590 1.96617 0.92125 0.90332 0.90849 0.89113 0.89295 0.77690 0.90274 0.95112 0.82271 0.89674 0.93943 0.77483 0.91953 0.85434 0.84884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.31 10.27 59.85 0.61 0.92 16 2 N -0.60 -4.58 2.83 -181.57 -0.51 -5.09 16 3 C 0.08 0.66 5.15 -4.04 -0.02 0.64 16 4 C 0.09 0.99 3.48 -26.73 -0.09 0.90 16 5 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 6 O -0.55 -7.28 11.67 -43.91 -0.51 -7.79 16 7 C 0.03 0.35 5.36 -3.82 -0.02 0.33 16 8 N -0.66 -11.04 6.13 -115.06 -0.70 -11.74 16 9 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 10 C 0.44 10.68 7.82 -10.98 -0.09 10.60 16 11 O -0.58 -16.31 15.78 5.55 0.09 -16.22 16 12 N -0.56 -14.58 5.29 -10.96 -0.06 -14.64 16 13 C -0.30 -8.46 9.68 -14.93 -0.14 -8.60 16 14 H 0.10 3.09 7.16 -52.48 -0.38 2.71 16 15 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 16 N -0.90 -24.81 13.05 55.50 0.72 -24.08 16 17 Si 0.93 21.34 29.55 -169.99 -5.02 16.32 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 C 0.55 5.28 6.97 -10.98 -0.08 5.20 16 22 O -0.52 -6.78 13.51 -3.12 -0.04 -6.82 16 23 C -0.20 -1.33 5.27 -91.77 -0.48 -1.82 16 24 H 0.15 0.65 6.44 -51.93 -0.33 0.32 16 25 C -0.15 -0.69 10.20 -26.73 -0.27 -0.96 16 26 C 0.23 2.01 5.19 -26.73 -0.14 1.87 16 27 F -0.16 -1.44 17.60 2.25 0.04 -1.40 16 28 F -0.14 -1.67 15.71 2.25 0.04 -1.63 16 29 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.08 0.30 8.07 -51.93 -0.42 -0.11 16 31 H 0.07 0.22 6.00 -51.93 -0.31 -0.09 16 32 H 0.09 0.50 8.07 -51.93 -0.42 0.08 16 33 H 0.09 0.77 7.42 -51.93 -0.39 0.39 16 34 H 0.38 4.52 8.45 45.56 0.38 4.91 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.36 6.53 7.99 -39.29 -0.31 6.21 16 38 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 41 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.13 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.13 0.23 8.14 -51.93 -0.42 -0.19 16 LS Contribution 374.42 15.07 5.64 5.64 Total: -1.00 -36.10 374.42 -6.19 -42.28 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -5.01 Total: 14.75 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: -0.85 Total: 10.42 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: -0.55 Total: -55.55 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -0.47 Total: -30.83 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.08 Total: -3.03 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.10 -6.19 -42.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700941373.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.326 kcal (2) G-P(sol) polarization free energy of solvation -36.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds