Wall clock time and date at job start Tue Mar 31 2020 18:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 119.99884 * 2 1 4 4 C 1.53000 * 109.46986 * 269.99545 * 3 2 1 5 5 H 1.08991 * 109.47114 * 60.00204 * 4 3 2 6 6 O 1.42901 * 109.47341 * 300.00159 * 4 3 2 7 7 C 1.52996 * 109.47213 * 180.02562 * 4 3 2 8 8 N 1.46903 * 109.47257 * 185.00128 * 7 4 3 9 9 C 1.46902 * 111.00100 * 179.97438 * 8 7 4 10 10 C 1.50698 * 109.46872 * 179.97438 * 9 8 7 11 11 O 1.21291 * 120.00415 * 0.02562 * 10 9 8 12 12 N 1.34783 * 119.99542 * 179.97438 * 10 9 8 13 13 C 1.37095 * 119.99719 * 179.97438 * 12 10 9 14 14 H 1.08004 * 120.00587 * 0.02562 * 13 12 10 15 15 C 1.38950 * 119.99938 * 179.97438 * 13 12 10 16 16 N 1.31405 * 120.00107 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99970 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47166 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46986 * 120.00263 * 17 15 13 20 20 H 1.48502 * 109.47561 * 240.00547 * 17 15 13 21 21 C 1.34777 * 119.99858 * 179.97438 * 2 1 3 22 22 O 1.21279 * 120.00166 * 180.02562 * 21 2 1 23 23 C 1.50706 * 119.99762 * 0.02562 * 21 2 1 24 24 H 1.08996 * 115.55128 * 34.33271 * 23 21 2 25 25 C 1.53001 * 117.49756 * 248.61806 * 23 21 2 26 26 C 1.52999 * 59.99986 * 252.51526 * 25 23 21 27 27 F 1.39899 * 117.49723 * 252.51260 * 26 25 23 28 28 F 1.39901 * 117.52253 * 107.48210 * 26 25 23 29 29 H 1.08999 * 109.47441 * 270.00307 * 1 2 3 30 30 H 1.09005 * 109.47121 * 30.00515 * 1 2 3 31 31 H 1.08997 * 109.47160 * 150.00168 * 1 2 3 32 32 H 1.09000 * 109.47710 * 29.99936 * 3 2 1 33 33 H 1.09000 * 109.46883 * 149.99979 * 3 2 1 34 34 H 0.96704 * 113.99924 * 300.00429 * 6 4 3 35 35 H 1.08999 * 109.47012 * 304.99801 * 7 4 3 36 36 H 1.08998 * 109.47407 * 64.99879 * 7 4 3 37 37 H 1.00902 * 110.99827 * 303.94937 * 8 7 4 38 38 H 1.09003 * 109.46797 * 299.99978 * 9 8 7 39 39 H 1.08994 * 109.47190 * 59.99909 * 9 8 7 40 40 H 0.97001 * 120.00126 * 359.97438 * 12 10 9 41 41 H 0.96998 * 120.00095 * 179.97438 * 16 15 13 42 42 H 1.09004 * 117.49834 * 0.02562 * 25 23 21 43 43 H 1.08997 * 117.49999 * 145.02096 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 1 1.5002 1.8406 -1.9563 6 8 3.2249 0.7144 -2.1161 7 6 3.2181 3.0350 -1.4426 8 7 3.3584 3.5194 -2.8223 9 6 4.0897 4.7929 -2.8613 10 6 4.2142 5.2570 -4.2897 11 8 3.7400 4.5926 -5.1868 12 7 4.8516 6.4110 -4.5701 13 6 4.9654 6.8330 -5.8695 14 1 4.5439 6.2410 -6.6685 15 6 5.6221 8.0229 -6.1585 16 7 6.1345 8.7435 -5.1865 17 14 5.7776 8.5975 -7.9291 18 1 5.1216 7.6143 -8.8282 19 1 5.1204 9.9207 -8.0797 20 1 7.2141 8.7147 -8.2872 21 6 2.1389 -1.1672 0.0005 22 8 3.3517 -1.1673 0.0010 23 6 1.3853 -2.4723 0.0005 24 1 0.4472 -2.4735 -0.5545 25 6 1.4600 -3.3312 1.2645 26 6 2.2074 -3.7627 0.0011 27 9 1.6972 -4.8539 -0.7103 28 9 3.6011 -3.6407 0.0010 29 1 -0.3634 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6085 2.0284 0.5138 33 1 3.1499 1.1383 0.5138 34 1 4.0874 0.5459 -1.7125 35 1 2.6710 3.7707 -0.8531 36 1 4.2063 2.8836 -1.0083 37 1 3.8056 2.8273 -3.4048 38 1 3.5483 5.5406 -2.2818 39 1 5.0839 4.6541 -2.4368 40 1 5.2299 6.9429 -3.8525 41 1 6.5932 9.5740 -5.3883 42 1 2.0539 -2.9521 2.0962 43 1 0.5709 -3.8975 1.5415 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700941373.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:23 Heat of formation + Delta-G solvation = -205.482500 kcal Electronic energy + Delta-G solvation = -28501.143463 eV Core-core repulsion = 23831.549809 eV Total energy + Delta-G solvation = -4669.593654 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.149 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.68776 -48.37148 -41.19768 -40.19774 -38.89876 -36.71548 -36.45992 -36.11879 -35.54379 -33.29076 -31.67254 -29.06454 -27.63003 -26.97670 -25.53876 -23.97390 -23.47093 -22.55666 -21.11126 -20.37944 -19.93476 -19.28836 -18.25305 -17.92622 -17.66401 -17.36636 -17.17551 -17.03615 -16.71686 -16.49073 -16.22128 -15.91786 -15.73968 -15.31218 -15.02251 -14.98974 -14.75332 -14.56506 -14.41923 -14.35073 -14.03061 -13.86257 -13.50194 -13.47109 -13.25346 -13.15157 -13.01928 -12.79058 -12.58295 -12.42729 -12.28156 -12.12819 -12.03667 -11.53645 -11.30961 -11.12502 -10.86413 -10.37594 -10.03657 -9.60050 -9.36214 -8.48723 -5.97558 1.21739 1.35349 1.40660 1.55138 1.75833 2.02659 2.04222 2.25335 2.29015 2.87835 3.17513 3.18325 3.21498 3.44496 3.53976 3.55927 3.73972 3.92611 4.08417 4.14759 4.28571 4.34015 4.38017 4.46658 4.50249 4.53359 4.56606 4.65125 4.71319 4.76435 4.80484 4.99547 5.11049 5.39280 5.42841 5.86209 6.08222 6.28205 6.32652 6.58203 6.74024 7.08222 7.10746 7.53759 8.09620 8.68877 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.027905 B = 0.001762 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.160171 B =15886.824783 C =16252.312756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.600 5.600 3 C 0.090 3.910 4 C 0.097 3.903 5 H 0.099 0.901 6 O -0.572 6.572 7 C 0.033 3.967 8 N -0.681 5.681 9 C 0.065 3.935 10 C 0.435 3.565 11 O -0.625 6.625 12 N -0.572 5.572 13 C -0.335 4.335 14 H 0.077 0.923 15 C -0.013 4.013 16 N -0.919 5.919 17 Si 0.994 3.006 18 H -0.275 1.275 19 H -0.269 1.269 20 H -0.270 1.270 21 C 0.536 3.464 22 O -0.561 6.561 23 C -0.193 4.193 24 H 0.176 0.824 25 C -0.107 4.107 26 C 0.187 3.813 27 F -0.165 7.165 28 F -0.167 7.167 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.123 0.877 33 H 0.080 0.920 34 H 0.377 0.623 35 H 0.103 0.897 36 H 0.041 0.959 37 H 0.343 0.657 38 H 0.110 0.890 39 H 0.064 0.936 40 H 0.397 0.603 41 H 0.278 0.722 42 H 0.131 0.869 43 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.978 -19.944 21.583 32.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.331 5.331 3 C -0.033 4.033 4 C 0.037 3.963 5 H 0.117 0.883 6 O -0.379 6.379 7 C -0.097 4.097 8 N -0.313 5.313 9 C -0.067 4.067 10 C 0.223 3.777 11 O -0.512 6.512 12 N -0.210 5.210 13 C -0.464 4.464 14 H 0.095 0.905 15 C -0.213 4.213 16 N -0.560 5.560 17 Si 0.818 3.182 18 H -0.199 1.199 19 H -0.194 1.194 20 H -0.195 1.195 21 C 0.324 3.676 22 O -0.440 6.440 23 C -0.215 4.215 24 H 0.193 0.807 25 C -0.144 4.144 26 C 0.150 3.850 27 F -0.145 7.145 28 F -0.148 7.148 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.141 0.859 33 H 0.098 0.902 34 H 0.225 0.775 35 H 0.121 0.879 36 H 0.059 0.941 37 H 0.161 0.839 38 H 0.128 0.872 39 H 0.082 0.918 40 H 0.231 0.769 41 H 0.088 0.912 42 H 0.149 0.851 43 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -14.682 -19.924 20.582 32.189 hybrid contribution 2.083 0.377 -0.525 2.181 sum -12.599 -19.547 20.057 30.710 Atomic orbital electron populations 1.22202 0.76671 1.04782 1.03930 1.47656 1.08565 1.04725 1.72194 1.22183 0.99148 0.85817 0.96190 1.22397 0.95072 0.85668 0.93199 0.88334 1.86585 1.33759 1.59960 1.57551 1.22694 1.00030 0.97644 0.89338 1.60043 1.55825 1.04793 1.10673 1.21557 0.98505 0.94044 0.92603 1.20944 0.82213 0.82519 0.92066 1.90500 1.53159 1.57658 1.49882 1.41931 1.50059 1.20408 1.08566 1.19699 1.35495 1.06004 0.85246 0.90496 1.26054 0.95747 0.95647 1.03863 1.69670 1.37315 1.15420 1.33608 0.84859 0.78306 0.78109 0.76973 1.19946 1.19389 1.19548 1.19624 0.86992 0.85073 0.75896 1.90738 1.15184 1.87470 1.50609 1.23781 1.02628 0.89037 1.06009 0.80694 1.24458 1.03057 0.96703 0.90203 1.20082 0.75786 0.86799 1.02356 1.93028 1.85838 1.55341 1.80306 1.93065 1.28922 1.95807 1.96968 0.89704 0.89892 0.89621 0.85949 0.90188 0.77486 0.87894 0.94077 0.83852 0.87171 0.91827 0.76883 0.91235 0.85074 0.81054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.34 10.27 127.77 1.31 1.65 16 2 N -0.60 -7.94 2.83 -846.75 -2.39 -10.33 16 3 C 0.09 1.24 5.15 86.38 0.44 1.69 16 4 C 0.10 1.96 3.48 30.59 0.11 2.06 16 5 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 6 O -0.57 -15.43 11.67 -140.68 -1.64 -17.07 16 7 C 0.03 0.70 5.36 86.30 0.46 1.16 16 8 N -0.68 -22.13 6.13 -517.94 -3.17 -25.30 16 9 C 0.07 2.27 6.17 85.56 0.53 2.79 16 10 C 0.43 21.36 7.82 87.66 0.69 22.04 16 11 O -0.63 -36.19 15.78 -3.06 -0.05 -36.24 16 12 N -0.57 -29.99 5.29 -306.98 -1.62 -31.61 16 13 C -0.33 -19.45 9.68 84.04 0.81 -18.63 16 14 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 15 C -0.01 -0.72 5.50 84.93 0.47 -0.26 16 16 N -0.92 -49.99 13.05 21.66 0.28 -49.71 16 17 Si 0.99 43.60 29.55 68.60 2.03 45.63 16 18 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 19 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 20 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 21 C 0.54 9.86 6.97 87.66 0.61 10.47 16 22 O -0.56 -15.13 13.51 5.27 0.07 -15.06 16 23 C -0.19 -2.29 5.27 -11.54 -0.06 -2.35 16 24 H 0.18 1.03 6.44 -2.39 -0.02 1.02 16 25 C -0.11 -0.71 10.20 30.59 0.31 -0.40 16 26 C 0.19 3.19 5.19 30.59 0.16 3.35 16 27 F -0.16 -3.01 17.60 44.97 0.79 -2.22 16 28 F -0.17 -4.31 15.71 44.97 0.71 -3.60 16 29 H 0.08 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.08 0.39 8.07 -2.38 -0.02 0.37 16 31 H 0.09 0.24 6.00 -2.39 -0.01 0.22 16 32 H 0.12 0.91 8.07 -2.39 -0.02 0.89 16 33 H 0.08 1.30 7.42 -2.39 -0.02 1.28 16 34 H 0.38 9.53 8.45 -74.05 -0.63 8.90 16 35 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.34 12.73 7.99 -89.69 -0.72 12.02 16 38 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 39 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.40 19.57 7.90 -92.71 -0.73 18.84 16 41 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 42 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.17 -0.17 8.14 -2.39 -0.02 -0.19 16 Total: -1.00 -82.25 374.42 -0.15 -82.39 By element: Atomic # 1 Polarization: 40.54 SS G_CDS: -0.99 Total: 39.56 kcal Atomic # 6 Polarization: 17.73 SS G_CDS: 5.84 Total: 23.57 kcal Atomic # 7 Polarization: -110.05 SS G_CDS: -6.91 Total: -116.96 kcal Atomic # 8 Polarization: -66.76 SS G_CDS: -1.62 Total: -68.38 kcal Atomic # 9 Polarization: -7.32 SS G_CDS: 1.50 Total: -5.82 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -82.25 -0.15 -82.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700941373.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.088 kcal (2) G-P(sol) polarization free energy of solvation -82.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds