Wall clock time and date at job start Tue Mar 31 2020 18:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46492 * 120.00169 * 2 1 4 4 C 1.52997 * 109.47290 * 89.99837 * 3 2 1 5 5 H 1.09001 * 109.47289 * 304.99819 * 4 3 2 6 6 O 1.42905 * 109.47264 * 64.99985 * 4 3 2 7 7 C 1.53005 * 109.47452 * 184.99894 * 4 3 2 8 8 N 1.46898 * 109.47342 * 179.97438 * 7 4 3 9 9 C 1.46894 * 110.99937 * 179.97438 * 8 7 4 10 10 C 1.50700 * 109.47146 * 180.02562 * 9 8 7 11 11 O 1.21297 * 120.00025 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00468 * 180.02562 * 10 9 8 13 13 C 1.37087 * 120.00439 * 180.02562 * 12 10 9 14 14 H 1.08003 * 120.00156 * 359.97438 * 13 12 10 15 15 C 1.38946 * 120.00189 * 180.02562 * 13 12 10 16 16 N 1.31411 * 119.99912 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00362 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47220 * 89.99192 * 17 15 13 19 19 H 1.48494 * 109.47225 * 209.99626 * 17 15 13 20 20 H 1.48506 * 109.46854 * 329.99814 * 17 15 13 21 21 C 1.34784 * 119.99875 * 179.97438 * 2 1 3 22 22 O 1.21273 * 120.00000 * 180.02562 * 21 2 1 23 23 C 1.50699 * 119.99908 * 0.02562 * 21 2 1 24 24 H 1.09001 * 115.55455 * 34.32583 * 23 21 2 25 25 C 1.53006 * 117.49721 * 248.62148 * 23 21 2 26 26 C 1.52998 * 117.49890 * 179.97438 * 23 21 2 27 27 F 1.39903 * 117.50127 * 214.97817 * 26 23 21 28 28 F 1.39894 * 117.49942 * 359.97438 * 26 23 21 29 29 H 1.08998 * 109.46883 * 90.00137 * 1 2 3 30 30 H 1.09000 * 109.47574 * 209.99898 * 1 2 3 31 31 H 1.08993 * 109.47164 * 330.00357 * 1 2 3 32 32 H 1.09004 * 109.47472 * 329.99814 * 3 2 1 33 33 H 1.09002 * 109.47083 * 210.00006 * 3 2 1 34 34 H 0.96705 * 113.99788 * 60.00095 * 6 4 3 35 35 H 1.09001 * 109.46812 * 300.00216 * 7 4 3 36 36 H 1.09002 * 109.46935 * 59.99874 * 7 4 3 37 37 H 1.00898 * 111.00042 * 303.95611 * 8 7 4 38 38 H 1.09002 * 109.47659 * 300.00319 * 9 8 7 39 39 H 1.09005 * 109.46819 * 60.00639 * 9 8 7 40 40 H 0.97005 * 119.99475 * 0.02562 * 12 10 9 41 41 H 0.97003 * 120.00238 * 180.02562 * 16 15 13 42 42 H 1.08988 * 117.49804 * 0.02562 * 25 23 21 43 43 H 1.08996 * 117.49382 * 145.01927 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4525 1.7103 1.4425 5 1 1.5061 1.7550 1.9815 6 8 3.3209 0.7724 2.0814 7 6 3.1061 3.0938 1.4443 8 7 3.3504 3.5181 2.8293 9 6 3.9792 4.8450 2.8702 10 6 4.2144 5.2455 4.3038 11 8 3.8905 4.4987 5.2031 12 7 4.7847 6.4334 4.5869 13 6 4.9991 6.7975 5.8910 14 1 4.7107 6.1326 6.6918 15 6 5.5866 8.0224 6.1828 16 7 5.9370 8.8317 5.2086 17 14 5.8781 8.5189 7.9599 18 1 7.2210 8.0530 8.3901 19 1 5.8053 9.9972 8.0792 20 1 4.8398 7.9008 8.8232 21 6 2.1389 -1.1673 0.0005 22 8 3.3516 -1.1673 0.0010 23 6 1.3854 -2.4723 0.0005 24 1 0.4472 -2.4736 -0.5544 25 6 1.4601 -3.3312 1.2646 26 6 2.2074 -3.7627 0.0005 27 9 1.6969 -4.8539 -0.7109 28 9 3.6010 -3.6408 0.0000 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5137 32 1 1.6085 2.0284 -0.5139 33 1 3.1499 1.1383 -0.5138 34 1 4.1837 0.6810 1.6543 35 1 4.0525 3.0492 0.9053 36 1 2.4437 3.8092 0.9570 37 1 2.4969 3.5053 3.3673 38 1 4.9319 4.8121 2.3415 39 1 3.3233 5.5728 2.3922 40 1 5.0434 7.0308 3.8677 41 1 6.3475 9.6867 5.4122 42 1 2.0538 -2.9521 2.0962 43 1 0.5709 -3.8975 1.5415 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700941377.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:32 Heat of formation + Delta-G solvation = -174.470003 kcal Electronic energy + Delta-G solvation = -28527.606724 eV Core-core repulsion = 23859.357873 eV Total energy + Delta-G solvation = -4668.248851 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.149 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.01072 -47.64276 -40.49121 -38.44426 -37.75608 -36.03007 -35.68394 -34.68612 -33.75837 -31.23602 -30.67439 -27.95051 -27.02878 -25.57868 -24.18905 -23.14239 -22.74740 -21.73079 -19.75321 -19.23222 -18.62903 -17.88707 -17.39358 -17.04250 -16.83171 -16.32399 -16.20818 -15.91046 -15.63764 -15.17458 -14.88318 -14.57599 -14.42622 -14.27693 -14.11633 -14.05860 -13.81225 -13.70369 -13.37705 -13.36586 -13.12017 -12.98752 -12.70208 -12.47220 -12.05196 -11.82738 -11.68768 -11.53111 -11.48380 -11.14545 -11.02682 -10.58755 -10.38537 -10.32622 -10.20952 -10.08853 -9.49784 -8.95381 -8.43008 -8.03380 -7.94430 -6.40710 -3.81390 1.87892 2.26481 2.60269 2.91670 3.18976 3.27342 3.33291 3.68638 3.72913 3.91960 4.03288 4.14679 4.23281 4.24863 4.46050 4.59678 4.73586 4.80618 4.88450 4.96852 5.00569 5.05566 5.10437 5.19394 5.22345 5.28076 5.28406 5.37369 5.53412 5.77768 5.92013 5.97187 6.00355 6.26953 6.87076 7.18697 7.56355 7.62727 7.74167 7.84362 8.07566 8.62669 9.19188 9.55473 10.07282 10.77086 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.028483 B = 0.001770 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.814995 B =15812.874941 C =16180.130662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.605 5.605 3 C 0.083 3.917 4 C 0.097 3.903 5 H 0.095 0.905 6 O -0.537 6.537 7 C 0.029 3.971 8 N -0.657 5.657 9 C 0.051 3.949 10 C 0.441 3.559 11 O -0.581 6.581 12 N -0.565 5.565 13 C -0.299 4.299 14 H 0.103 0.897 15 C 0.021 3.979 16 N -0.903 5.903 17 Si 0.931 3.069 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.270 1.270 21 C 0.547 3.453 22 O -0.510 6.510 23 C -0.197 4.197 24 H 0.146 0.854 25 C -0.145 4.145 26 C 0.229 3.771 27 F -0.158 7.158 28 F -0.137 7.137 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.377 0.623 35 H 0.075 0.925 36 H 0.034 0.966 37 H 0.349 0.651 38 H 0.085 0.915 39 H 0.042 0.958 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.133 0.867 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.104 -19.350 -16.659 29.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.339 5.339 3 C -0.040 4.040 4 C 0.036 3.964 5 H 0.112 0.888 6 O -0.342 6.342 7 C -0.102 4.102 8 N -0.290 5.290 9 C -0.082 4.082 10 C 0.226 3.774 11 O -0.465 6.465 12 N -0.201 5.201 13 C -0.428 4.428 14 H 0.121 0.879 15 C -0.180 4.180 16 N -0.544 5.544 17 Si 0.758 3.242 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.194 1.194 21 C 0.333 3.667 22 O -0.384 6.384 23 C -0.219 4.219 24 H 0.164 0.836 25 C -0.183 4.183 26 C 0.191 3.809 27 F -0.138 7.138 28 F -0.117 7.117 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.225 0.775 35 H 0.094 0.906 36 H 0.052 0.948 37 H 0.169 0.831 38 H 0.103 0.897 39 H 0.060 0.940 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.151 0.849 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -13.460 -20.078 -15.612 28.776 hybrid contribution -0.062 1.433 -0.502 1.520 sum -13.522 -18.645 -16.115 28.110 Atomic orbital electron populations 1.21879 0.79158 1.03841 1.01975 1.47527 1.06987 1.05493 1.73862 1.22285 0.98684 0.84706 0.98311 1.22230 0.94411 0.87930 0.91832 0.88757 1.86588 1.29212 1.61780 1.56641 1.22621 1.00383 0.95715 0.91494 1.59910 1.32564 1.26773 1.09729 1.21688 0.99950 0.89558 0.96984 1.19806 0.84457 0.83406 0.89725 1.90536 1.55816 1.52502 1.47621 1.41861 1.53606 1.15866 1.08810 1.19706 1.37188 1.01876 0.84046 0.87922 1.25265 0.97098 0.95878 0.99779 1.69613 1.42116 1.10712 1.31967 0.85848 0.78936 0.77425 0.82022 1.20375 1.20963 1.19435 1.19117 0.87276 0.83681 0.76589 1.90774 1.13108 1.86652 1.47867 1.23660 1.02512 0.91192 1.04571 0.83587 1.24311 1.03154 0.98762 0.92109 1.19484 0.76744 0.85583 0.99063 1.93051 1.86017 1.54999 1.79759 1.93143 1.26320 1.95570 1.96635 0.92282 0.90724 0.90492 0.89441 0.89097 0.77534 0.90627 0.94840 0.83130 0.89652 0.94043 0.77490 0.91903 0.84912 0.84909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.30 10.01 59.85 0.60 0.90 16 2 N -0.61 -4.61 2.86 -181.58 -0.52 -5.13 16 3 C 0.08 0.66 5.11 -4.05 -0.02 0.64 16 4 C 0.10 1.00 3.42 -26.73 -0.09 0.91 16 5 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 6 O -0.54 -7.31 12.07 -43.04 -0.52 -7.83 16 7 C 0.03 0.32 5.35 -3.82 -0.02 0.30 16 8 N -0.66 -10.66 5.99 -115.06 -0.69 -11.35 16 9 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 10 C 0.44 10.58 7.82 -10.98 -0.09 10.49 16 11 O -0.58 -16.16 15.78 5.54 0.09 -16.07 16 12 N -0.56 -14.48 5.29 -10.96 -0.06 -14.54 16 13 C -0.30 -8.43 9.68 -14.94 -0.14 -8.58 16 14 H 0.10 3.05 7.16 -52.48 -0.38 2.67 16 15 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 16 N -0.90 -24.71 13.05 55.50 0.72 -23.98 16 17 Si 0.93 21.24 29.55 -169.99 -5.02 16.22 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 C 0.55 5.37 7.08 -10.98 -0.08 5.29 16 22 O -0.51 -6.91 13.70 -2.24 -0.03 -6.94 16 23 C -0.20 -1.36 4.78 -91.77 -0.44 -1.80 16 24 H 0.15 0.56 7.26 -51.93 -0.38 0.18 16 25 C -0.15 -0.87 10.21 -26.70 -0.27 -1.14 16 26 C 0.23 2.03 5.19 -26.71 -0.14 1.89 16 27 F -0.16 -1.40 17.60 2.25 0.04 -1.36 16 28 F -0.14 -1.70 15.71 2.25 0.04 -1.66 16 29 H 0.06 0.16 8.14 -51.93 -0.42 -0.27 16 30 H 0.07 0.21 6.64 -51.93 -0.34 -0.13 16 31 H 0.08 0.26 8.07 -51.93 -0.42 -0.16 16 32 H 0.09 0.48 8.07 -51.93 -0.42 0.06 16 33 H 0.09 0.82 7.42 -51.93 -0.39 0.43 16 34 H 0.38 4.80 8.75 45.56 0.40 5.20 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.35 5.90 8.43 -39.29 -0.33 5.57 16 38 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 39 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 41 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.13 0.93 8.14 -51.94 -0.42 0.51 16 43 H 0.13 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 376.38 15.07 5.67 5.67 Total: -1.00 -36.07 376.38 -6.19 -42.26 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -5.09 Total: 14.46 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: -0.82 Total: 10.25 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -0.54 Total: -55.00 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -0.46 Total: -30.83 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.08 Total: -3.03 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.07 -6.19 -42.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700941377.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.211 kcal (2) G-P(sol) polarization free energy of solvation -36.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds