Wall clock time and date at job start Tue Mar 31 2020 18:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46492 * 120.00169 * 2 1 4 4 C 1.52997 * 109.47290 * 89.99837 * 3 2 1 5 5 H 1.09001 * 109.47289 * 304.99819 * 4 3 2 6 6 O 1.42905 * 109.47264 * 64.99985 * 4 3 2 7 7 C 1.53005 * 109.47452 * 184.99894 * 4 3 2 8 8 N 1.46898 * 109.47342 * 179.97438 * 7 4 3 9 9 C 1.46894 * 110.99937 * 179.97438 * 8 7 4 10 10 C 1.50700 * 109.47146 * 180.02562 * 9 8 7 11 11 O 1.21297 * 120.00025 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00468 * 180.02562 * 10 9 8 13 13 C 1.37087 * 120.00439 * 180.02562 * 12 10 9 14 14 H 1.08003 * 120.00156 * 359.97438 * 13 12 10 15 15 C 1.38946 * 120.00189 * 180.02562 * 13 12 10 16 16 N 1.31411 * 119.99912 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00362 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47220 * 89.99192 * 17 15 13 19 19 H 1.48494 * 109.47225 * 209.99626 * 17 15 13 20 20 H 1.48506 * 109.46854 * 329.99814 * 17 15 13 21 21 C 1.34784 * 119.99875 * 179.97438 * 2 1 3 22 22 O 1.21273 * 120.00000 * 180.02562 * 21 2 1 23 23 C 1.50699 * 119.99908 * 0.02562 * 21 2 1 24 24 H 1.09001 * 115.55455 * 34.32583 * 23 21 2 25 25 C 1.53006 * 117.49721 * 248.62148 * 23 21 2 26 26 C 1.52998 * 117.49890 * 179.97438 * 23 21 2 27 27 F 1.39903 * 117.50127 * 214.97817 * 26 23 21 28 28 F 1.39894 * 117.49942 * 359.97438 * 26 23 21 29 29 H 1.08998 * 109.46883 * 90.00137 * 1 2 3 30 30 H 1.09000 * 109.47574 * 209.99898 * 1 2 3 31 31 H 1.08993 * 109.47164 * 330.00357 * 1 2 3 32 32 H 1.09004 * 109.47472 * 329.99814 * 3 2 1 33 33 H 1.09002 * 109.47083 * 210.00006 * 3 2 1 34 34 H 0.96705 * 113.99788 * 60.00095 * 6 4 3 35 35 H 1.09001 * 109.46812 * 300.00216 * 7 4 3 36 36 H 1.09002 * 109.46935 * 59.99874 * 7 4 3 37 37 H 1.00898 * 111.00042 * 303.95611 * 8 7 4 38 38 H 1.09002 * 109.47659 * 300.00319 * 9 8 7 39 39 H 1.09005 * 109.46819 * 60.00639 * 9 8 7 40 40 H 0.97005 * 119.99475 * 0.02562 * 12 10 9 41 41 H 0.97003 * 120.00238 * 180.02562 * 16 15 13 42 42 H 1.08988 * 117.49804 * 0.02562 * 25 23 21 43 43 H 1.08996 * 117.49382 * 145.01927 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4525 1.7103 1.4425 5 1 1.5061 1.7550 1.9815 6 8 3.3209 0.7724 2.0814 7 6 3.1061 3.0938 1.4443 8 7 3.3504 3.5181 2.8293 9 6 3.9792 4.8450 2.8702 10 6 4.2144 5.2455 4.3038 11 8 3.8905 4.4987 5.2031 12 7 4.7847 6.4334 4.5869 13 6 4.9991 6.7975 5.8910 14 1 4.7107 6.1326 6.6918 15 6 5.5866 8.0224 6.1828 16 7 5.9370 8.8317 5.2086 17 14 5.8781 8.5189 7.9599 18 1 7.2210 8.0530 8.3901 19 1 5.8053 9.9972 8.0792 20 1 4.8398 7.9008 8.8232 21 6 2.1389 -1.1673 0.0005 22 8 3.3516 -1.1673 0.0010 23 6 1.3854 -2.4723 0.0005 24 1 0.4472 -2.4736 -0.5544 25 6 1.4601 -3.3312 1.2646 26 6 2.2074 -3.7627 0.0005 27 9 1.6969 -4.8539 -0.7109 28 9 3.6010 -3.6408 0.0000 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5137 32 1 1.6085 2.0284 -0.5139 33 1 3.1499 1.1383 -0.5138 34 1 4.1837 0.6810 1.6543 35 1 4.0525 3.0492 0.9053 36 1 2.4437 3.8092 0.9570 37 1 2.4969 3.5053 3.3673 38 1 4.9319 4.8121 2.3415 39 1 3.3233 5.5728 2.3922 40 1 5.0434 7.0308 3.8677 41 1 6.3475 9.6867 5.4122 42 1 2.0538 -2.9521 2.0962 43 1 0.5709 -3.8975 1.5415 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700941377.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:31 Heat of formation + Delta-G solvation = -204.380805 kcal Electronic energy + Delta-G solvation = -28528.903754 eV Core-core repulsion = 23859.357873 eV Total energy + Delta-G solvation = -4669.545881 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.149 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.69752 -48.37558 -41.17224 -40.17720 -38.80571 -36.70631 -36.45424 -36.09576 -35.53487 -33.27746 -31.59780 -29.04519 -27.62753 -26.95937 -25.49524 -23.97780 -23.48927 -22.58938 -21.09043 -20.37154 -19.91941 -19.25686 -18.24329 -17.86399 -17.69753 -17.38330 -17.05434 -16.99365 -16.63912 -16.38845 -16.12362 -15.99962 -15.75946 -15.26542 -15.02731 -14.98890 -14.71599 -14.68259 -14.47422 -14.33423 -13.96453 -13.81882 -13.47096 -13.45407 -13.21781 -13.17535 -12.99322 -12.77847 -12.57475 -12.42865 -12.29033 -12.12408 -11.98551 -11.51998 -11.21677 -11.13857 -10.85076 -10.35449 -10.02572 -9.58113 -9.26263 -8.47612 -5.96436 1.23257 1.37527 1.41240 1.54049 1.68344 2.03286 2.04339 2.28662 2.32785 2.87517 3.18060 3.19615 3.21782 3.45728 3.52458 3.67559 3.76472 3.86725 4.12108 4.16925 4.30192 4.37477 4.39243 4.47316 4.50975 4.55931 4.57616 4.63578 4.71607 4.75895 4.78912 4.97745 5.10936 5.39926 5.45285 5.87816 6.10072 6.28769 6.38903 6.59432 6.87905 7.09596 7.11800 7.55191 8.11045 8.69716 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.028483 B = 0.001770 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.814995 B =15812.874941 C =16180.130662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.602 5.602 3 C 0.089 3.911 4 C 0.100 3.900 5 H 0.097 0.903 6 O -0.562 6.562 7 C 0.032 3.968 8 N -0.679 5.679 9 C 0.067 3.933 10 C 0.435 3.565 11 O -0.625 6.625 12 N -0.573 5.573 13 C -0.335 4.335 14 H 0.077 0.923 15 C -0.013 4.013 16 N -0.920 5.920 17 Si 0.994 3.006 18 H -0.272 1.272 19 H -0.269 1.269 20 H -0.273 1.273 21 C 0.534 3.466 22 O -0.559 6.559 23 C -0.184 4.184 24 H 0.184 0.816 25 C -0.121 4.121 26 C 0.194 3.806 27 F -0.161 7.161 28 F -0.167 7.167 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.120 0.880 33 H 0.076 0.924 34 H 0.376 0.624 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.343 0.657 38 H 0.101 0.899 39 H 0.070 0.930 40 H 0.397 0.603 41 H 0.278 0.722 42 H 0.119 0.881 43 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.132 -18.867 -17.602 30.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.334 5.334 3 C -0.035 4.035 4 C 0.039 3.961 5 H 0.114 0.886 6 O -0.368 6.368 7 C -0.098 4.098 8 N -0.311 5.311 9 C -0.066 4.066 10 C 0.223 3.777 11 O -0.511 6.511 12 N -0.210 5.210 13 C -0.465 4.465 14 H 0.095 0.905 15 C -0.213 4.213 16 N -0.560 5.560 17 Si 0.817 3.183 18 H -0.198 1.198 19 H -0.193 1.193 20 H -0.198 1.198 21 C 0.321 3.679 22 O -0.437 6.437 23 C -0.206 4.206 24 H 0.201 0.799 25 C -0.159 4.159 26 C 0.157 3.843 27 F -0.141 7.141 28 F -0.147 7.147 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.138 0.862 33 H 0.095 0.905 34 H 0.224 0.776 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.161 0.839 38 H 0.119 0.881 39 H 0.088 0.912 40 H 0.231 0.769 41 H 0.087 0.913 42 H 0.137 0.863 43 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -15.525 -19.575 -16.601 29.996 hybrid contribution 0.523 1.271 -0.247 1.396 sum -15.002 -18.304 -16.848 29.051 Atomic orbital electron populations 1.22195 0.76609 1.05152 1.03726 1.47664 1.08563 1.04687 1.72476 1.22196 0.99007 0.85725 0.96522 1.22325 0.93642 0.86841 0.93253 0.88558 1.86555 1.29631 1.62868 1.57743 1.22692 1.01456 0.96711 0.88906 1.59890 1.32621 1.25893 1.12736 1.21532 1.01619 0.91127 0.92290 1.20952 0.82432 0.82136 0.92172 1.90501 1.57158 1.53542 1.49907 1.41931 1.54227 1.16719 1.08159 1.19660 1.39355 1.02599 0.84839 0.90460 1.26050 0.96120 0.95262 1.03890 1.69668 1.41818 1.10985 1.33575 0.84920 0.78682 0.77648 0.77032 1.19769 1.19347 1.19771 1.19682 0.87029 0.85145 0.76003 1.90755 1.15291 1.87455 1.50188 1.23765 1.02669 0.88789 1.05345 0.79891 1.24431 1.03321 0.97538 0.90617 1.19962 0.75725 0.86843 1.01803 1.93033 1.85785 1.55231 1.80063 1.93069 1.28914 1.95802 1.96937 0.90244 0.89226 0.89538 0.86187 0.90514 0.77627 0.90238 0.91918 0.83858 0.88104 0.91174 0.76923 0.91265 0.86278 0.81133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.28 10.01 127.77 1.28 1.56 16 2 N -0.60 -7.89 2.86 -846.79 -2.42 -10.31 16 3 C 0.09 1.23 5.11 86.38 0.44 1.67 16 4 C 0.10 1.92 3.42 30.60 0.10 2.02 16 5 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 6 O -0.56 -15.45 12.07 -141.52 -1.71 -17.16 16 7 C 0.03 0.66 5.35 86.31 0.46 1.12 16 8 N -0.68 -21.33 5.99 -517.93 -3.10 -24.44 16 9 C 0.07 2.27 6.17 85.56 0.53 2.80 16 10 C 0.44 21.10 7.82 87.66 0.69 21.79 16 11 O -0.62 -35.66 15.78 -3.08 -0.05 -35.71 16 12 N -0.57 -29.78 5.29 -306.99 -1.62 -31.41 16 13 C -0.33 -19.32 9.68 84.04 0.81 -18.50 16 14 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 15 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 16 N -0.92 -49.83 13.05 21.66 0.28 -49.55 16 17 Si 0.99 43.34 29.55 68.60 2.03 45.37 16 18 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 19 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 21 C 0.53 10.03 7.08 87.66 0.62 10.65 16 22 O -0.56 -15.67 13.70 4.46 0.06 -15.61 16 23 C -0.18 -2.20 4.78 -11.54 -0.06 -2.26 16 24 H 0.18 0.71 7.26 -2.39 -0.02 0.69 16 25 C -0.12 -1.24 10.21 30.61 0.31 -0.93 16 26 C 0.19 3.38 5.19 30.61 0.16 3.54 16 27 F -0.16 -2.75 17.60 44.97 0.79 -1.96 16 28 F -0.17 -4.41 15.71 44.97 0.71 -3.71 16 29 H 0.08 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.09 0.14 6.64 -2.39 -0.02 0.13 16 31 H 0.09 0.26 8.07 -2.39 -0.02 0.24 16 32 H 0.12 0.87 8.07 -2.38 -0.02 0.86 16 33 H 0.08 1.32 7.42 -2.39 -0.02 1.30 16 34 H 0.38 10.05 8.75 -74.05 -0.65 9.40 16 35 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.34 11.40 8.43 -89.70 -0.76 10.64 16 38 H 0.10 3.14 8.14 -2.39 -0.02 3.13 16 39 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 40 H 0.40 19.44 7.90 -92.70 -0.73 18.70 16 41 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 42 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.17 0.40 8.14 -2.39 -0.02 0.38 16 Total: -1.00 -81.99 376.38 -0.27 -82.26 By element: Atomic # 1 Polarization: 40.07 SS G_CDS: -1.05 Total: 39.02 kcal Atomic # 6 Polarization: 17.38 SS G_CDS: 5.82 Total: 23.20 kcal Atomic # 7 Polarization: -108.84 SS G_CDS: -6.86 Total: -115.70 kcal Atomic # 8 Polarization: -66.78 SS G_CDS: -1.70 Total: -68.47 kcal Atomic # 9 Polarization: -7.17 SS G_CDS: 1.50 Total: -5.67 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -81.99 -0.27 -82.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700941377.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.125 kcal (2) G-P(sol) polarization free energy of solvation -81.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds