Wall clock time and date at job start Tue Mar 31 2020 18:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36939 * 119.99950 * 2 1 4 4 H 1.08000 * 119.99931 * 177.91575 * 3 2 1 5 5 C 1.38809 * 120.00001 * 357.90691 * 3 2 1 6 6 N 1.31620 * 119.99939 * 33.45523 * 5 3 2 7 7 Si 1.86801 * 120.00207 * 213.43952 * 5 3 2 8 8 H 1.48501 * 109.46523 * 95.00751 * 7 5 3 9 9 H 1.48497 * 109.47381 * 215.00238 * 7 5 3 10 10 H 1.48501 * 109.47171 * 335.00899 * 7 5 3 11 11 C 1.46504 * 119.99880 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.47127 * 274.26875 * 11 2 1 13 13 H 1.08999 * 110.00319 * 305.59852 * 12 11 2 14 14 C 1.54327 * 109.87693 * 66.69328 * 12 11 2 15 15 C 1.55157 * 102.94139 * 141.60752 * 14 12 11 16 16 C 1.55129 * 101.48487 * 324.33441 * 15 14 12 17 17 N 1.47019 * 109.88268 * 184.49796 * 12 11 2 18 18 C 1.34780 * 125.64723 * 61.61072 * 17 12 11 19 19 O 1.21632 * 119.99801 * 354.90671 * 18 17 12 20 20 C 1.47263 * 119.99817 * 174.90733 * 18 17 12 21 21 C 1.35210 * 123.13774 * 179.97438 * 20 18 17 22 22 S 1.70944 * 108.82570 * 179.97438 * 21 20 18 23 23 C 1.70766 * 91.12834 * 0.02562 * 22 21 20 24 24 C 1.50705 * 124.72049 * 179.97438 * 23 22 21 25 25 C 1.53000 * 117.51502 * 351.30574 * 24 23 22 26 26 C 1.52995 * 117.49836 * 59.93324 * 24 23 22 27 27 N 1.28646 * 110.56035 * 0.24260 * 23 22 21 28 28 H 1.09007 * 109.46565 * 273.76472 * 1 2 3 29 29 H 1.09003 * 109.47290 * 33.76052 * 1 2 3 30 30 H 1.08992 * 109.47296 * 153.76290 * 1 2 3 31 31 H 0.96998 * 120.00221 * 179.97438 * 6 5 3 32 32 H 1.09006 * 109.46794 * 154.27018 * 11 2 1 33 33 H 1.09000 * 109.47117 * 34.27589 * 11 2 1 34 34 H 1.08997 * 110.72138 * 259.97136 * 14 12 11 35 35 H 1.08998 * 110.72024 * 23.07011 * 14 12 11 36 36 H 1.09010 * 111.00346 * 82.57005 * 15 14 12 37 37 H 1.09002 * 111.00940 * 206.41897 * 15 14 12 38 38 H 1.09000 * 110.49276 * 278.44976 * 16 15 14 39 39 H 1.09002 * 110.34503 * 156.06101 * 16 15 14 40 40 H 1.07999 * 125.58891 * 0.03137 * 21 20 18 41 41 H 1.08998 * 115.54931 * 205.61400 * 24 23 22 42 42 H 1.08994 * 117.49958 * 214.96927 * 25 24 23 43 43 H 1.08999 * 117.50322 * 359.97438 * 25 24 23 44 44 H 1.08998 * 117.49788 * 359.97438 * 26 24 23 45 45 H 1.09005 * 117.49922 * 144.97356 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2291 1.1862 0.0340 5 6 1.4563 2.3876 -0.0439 6 7 0.2844 2.4932 0.5459 7 14 2.1866 3.8552 -0.9397 8 1 1.6534 3.9050 -2.3247 9 1 1.8217 5.1039 -0.2236 10 1 3.6651 3.7232 -0.9828 11 6 2.1975 -1.2688 -0.0006 12 6 2.3595 -1.7648 1.4377 13 1 2.8244 -0.9911 2.0488 14 6 0.9809 -2.1378 2.0225 15 6 1.2909 -3.4054 2.8618 16 6 2.3787 -4.0917 1.9945 17 7 3.1854 -2.9809 1.4572 18 6 4.4662 -3.0673 1.0463 19 8 5.0046 -2.1076 0.5282 20 6 5.2135 -4.3235 1.2248 21 6 6.4990 -4.4804 0.8363 22 16 7.0001 -6.0700 1.2161 23 6 5.4653 -6.4335 1.8706 24 6 5.0787 -7.7633 2.4650 25 6 6.0622 -8.9238 2.3007 26 6 5.8833 -8.2603 3.6677 27 7 4.6832 -5.4161 1.7806 28 1 -0.3633 0.0675 1.0255 29 1 -0.3634 0.8544 -0.5711 30 1 -0.3633 -0.9217 -0.4543 31 1 -0.2000 3.3330 0.5156 32 1 3.1809 -1.1203 -0.4467 33 1 1.6437 -2.0078 -0.5797 34 1 0.6023 -1.3374 2.6583 35 1 0.2722 -2.3634 1.2257 36 1 1.6808 -3.1380 3.8440 37 1 0.4088 -4.0392 2.9528 38 1 1.9197 -4.6549 1.1819 39 1 2.9964 -4.7463 2.6093 40 1 7.1096 -3.7249 0.3642 41 1 4.0146 -7.9981 2.4396 42 1 5.6451 -9.9219 2.1674 43 1 6.9889 -8.7257 1.7622 44 1 6.6926 -7.6256 4.0287 45 1 5.3485 -8.8216 4.4339 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725061746.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:55 Heat of formation + Delta-G solvation = 79.276615 kcal Electronic energy + Delta-G solvation = -26829.249938 eV Core-core repulsion = 23168.986767 eV Total energy + Delta-G solvation = -3660.263171 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.67203 -39.15970 -37.64819 -36.97178 -35.23796 -31.68324 -31.19502 -30.62843 -28.95936 -26.28634 -26.05957 -25.06023 -24.18276 -22.95713 -22.20223 -20.94821 -20.82233 -20.13984 -19.12173 -17.99469 -16.72077 -16.62511 -16.11717 -15.94915 -15.47736 -14.86327 -14.73340 -14.43490 -13.96802 -13.73014 -13.55193 -13.32061 -13.03717 -12.93395 -12.71839 -12.56422 -12.19644 -11.97662 -11.84005 -11.72559 -11.38256 -11.28484 -11.07327 -10.97839 -10.78925 -10.71523 -10.43438 -10.26884 -10.11740 -9.90912 -9.81435 -9.74593 -9.63122 -9.53455 -9.02014 -8.36800 -8.07912 -6.87063 -5.77232 -2.89923 0.32219 0.96435 1.38030 1.87304 3.20288 3.33595 3.48806 3.50727 3.57898 3.60922 3.62687 4.25725 4.40789 4.48394 4.63983 4.76806 4.94189 4.95373 5.09550 5.13677 5.24923 5.29989 5.33757 5.38385 5.49428 5.53946 5.61352 5.68455 5.79522 5.89261 6.01912 6.14660 6.21086 6.38944 6.42617 6.57831 6.67984 6.77863 6.88212 7.12472 7.26386 7.45440 7.71350 7.87300 7.98394 8.37837 8.45373 9.29631 9.97626 10.42038 11.32987 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.021821 B = 0.002806 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.855752 B = 9976.054481 C =10996.472411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.151 3.849 2 N -0.598 5.598 3 C -0.252 4.252 4 H 0.079 0.921 5 C 0.004 3.996 6 N -0.893 5.893 7 Si 0.880 3.120 8 H -0.289 1.289 9 H -0.295 1.295 10 H -0.279 1.279 11 C 0.148 3.852 12 C 0.112 3.888 13 H 0.077 0.923 14 C -0.114 4.114 15 C -0.138 4.138 16 C 0.099 3.901 17 N -0.593 5.593 18 C 0.597 3.403 19 O -0.526 6.526 20 C 0.026 3.974 21 C -0.229 4.229 22 S 0.199 5.801 23 C 0.052 3.948 24 C -0.084 4.084 25 C -0.170 4.170 26 C -0.160 4.160 27 N -0.434 5.434 28 H 0.014 0.986 29 H 0.066 0.934 30 H -0.002 1.002 31 H 0.252 0.748 32 H 0.065 0.935 33 H 0.034 0.966 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.101 0.899 40 H 0.190 0.810 41 H 0.135 0.865 42 H 0.110 0.890 43 H 0.098 0.902 44 H 0.100 0.900 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.852 -26.484 6.049 28.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 N -0.321 5.321 3 C -0.381 4.381 4 H 0.096 0.904 5 C -0.194 4.194 6 N -0.538 5.538 7 Si 0.709 3.291 8 H -0.217 1.217 9 H -0.222 1.222 10 H -0.204 1.204 11 C 0.019 3.981 12 C 0.008 3.992 13 H 0.095 0.905 14 C -0.153 4.153 15 C -0.176 4.176 16 C -0.025 4.025 17 N -0.325 5.325 18 C 0.382 3.618 19 O -0.403 6.403 20 C -0.109 4.109 21 C -0.370 4.370 22 S 0.456 5.544 23 C -0.227 4.227 24 C -0.105 4.105 25 C -0.208 4.208 26 C -0.199 4.199 27 N -0.150 5.150 28 H 0.032 0.968 29 H 0.084 0.916 30 H 0.017 0.983 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.052 0.948 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.119 0.881 40 H 0.208 0.792 41 H 0.153 0.847 42 H 0.128 0.872 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 10.440 -26.357 5.804 28.938 hybrid contribution -0.287 1.792 -0.468 1.875 sum 10.154 -24.565 5.336 27.111 Atomic orbital electron populations 1.21094 0.82557 0.96890 0.98793 1.44121 1.01923 1.00706 1.85302 1.19303 0.91158 0.83255 1.44360 0.90351 1.24656 0.96743 0.97145 1.00861 1.70319 1.16516 1.25421 1.41509 0.86559 0.79015 0.82488 0.81007 1.21677 1.22233 1.20436 1.21105 0.97230 0.87668 0.92115 1.22817 0.89589 0.85026 1.01811 0.90526 1.22627 0.96270 0.97055 0.99300 1.22885 0.98373 0.97664 0.98684 1.22649 0.92879 0.89591 0.97338 1.48466 1.10369 1.12368 1.61307 1.16651 0.80548 0.85321 0.79321 1.90862 1.68472 1.37254 1.43690 1.20539 0.92620 0.94472 1.03261 1.26613 1.00116 1.02825 1.07472 1.82657 1.15492 1.04013 1.52229 1.26294 0.94184 0.98417 1.03764 1.20395 0.99455 0.87805 1.02879 1.23155 1.00292 0.97096 1.00222 1.23157 1.02329 1.02967 0.91415 1.67001 1.33859 0.98517 1.15576 0.96780 0.91555 0.98344 0.93833 0.91625 0.94762 0.90066 0.90853 0.91195 0.90499 0.92116 0.88078 0.79232 0.84717 0.87153 0.88326 0.88201 0.87347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 3.79 7.79 59.85 0.47 4.26 16 2 N -0.60 -15.75 2.88 -181.11 -0.52 -16.27 16 3 C -0.25 -7.36 9.64 -15.06 -0.15 -7.51 16 4 H 0.08 2.34 8.00 -52.49 -0.42 1.92 16 5 C 0.00 0.11 4.84 -17.43 -0.08 0.02 16 6 N -0.89 -26.55 10.80 55.49 0.60 -25.95 16 7 Si 0.88 22.72 29.66 -169.99 -5.04 17.68 16 8 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 9 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 10 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 11 C 0.15 3.38 5.21 -4.04 -0.02 3.36 16 12 C 0.11 2.27 3.15 -66.95 -0.21 2.06 16 13 H 0.08 1.79 8.14 -51.93 -0.42 1.36 16 14 C -0.11 -1.97 5.22 -24.89 -0.13 -2.10 16 15 C -0.14 -1.86 7.10 -24.46 -0.17 -2.03 16 16 C 0.10 1.40 6.25 -2.41 -0.02 1.39 16 17 N -0.59 -10.56 3.06 -164.19 -0.50 -11.06 16 18 C 0.60 11.11 7.64 -12.59 -0.10 11.01 16 19 O -0.53 -11.58 15.50 5.25 0.08 -11.49 16 20 C 0.03 0.38 6.62 -84.53 -0.56 -0.18 16 21 C -0.23 -2.81 10.62 29.65 0.31 -2.49 16 22 S 0.20 1.68 21.65 -107.50 -2.33 -0.65 16 23 C 0.05 0.51 6.99 -13.61 -0.10 0.42 16 24 C -0.08 -0.57 6.33 -91.77 -0.58 -1.15 16 25 C -0.17 -0.76 10.01 -26.73 -0.27 -1.03 16 26 C -0.16 -0.79 10.23 -26.74 -0.27 -1.07 16 27 N -0.43 -5.60 7.26 -8.51 -0.06 -5.66 16 28 H 0.01 0.36 7.65 -51.92 -0.40 -0.04 16 29 H 0.07 1.83 6.11 -51.93 -0.32 1.51 16 30 H 0.00 -0.04 7.68 -51.93 -0.40 -0.44 16 31 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.07 1.64 6.41 -51.93 -0.33 1.31 16 33 H 0.03 0.74 7.83 -51.93 -0.41 0.33 16 34 H 0.08 1.50 8.03 -51.93 -0.42 1.09 16 35 H 0.07 1.26 6.97 -51.93 -0.36 0.90 16 36 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.10 1.37 5.70 -51.93 -0.30 1.07 16 40 H 0.19 2.22 8.03 -52.49 -0.42 1.79 16 41 H 0.14 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.10 0.42 7.21 -51.93 -0.37 0.04 16 44 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 372.84 15.07 5.62 5.62 Total: -1.00 -33.69 372.84 -10.69 -44.38 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -6.66 Total: -1.56 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: -1.87 Total: 4.96 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: -0.49 Total: -58.94 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.08 Total: -11.49 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.04 Total: 17.68 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.33 Total: -0.65 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.69 -10.69 -44.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725061746.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.656 kcal (2) G-P(sol) polarization free energy of solvation -33.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds