Wall clock time and date at job start Tue Mar 31 2020 18:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36939 * 119.99950 * 2 1 4 4 H 1.08000 * 119.99931 * 177.91575 * 3 2 1 5 5 C 1.38809 * 120.00001 * 357.90691 * 3 2 1 6 6 N 1.31620 * 119.99939 * 33.45523 * 5 3 2 7 7 Si 1.86801 * 120.00207 * 213.43952 * 5 3 2 8 8 H 1.48501 * 109.46523 * 95.00751 * 7 5 3 9 9 H 1.48497 * 109.47381 * 215.00238 * 7 5 3 10 10 H 1.48501 * 109.47171 * 335.00899 * 7 5 3 11 11 C 1.46504 * 119.99880 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.47127 * 274.26875 * 11 2 1 13 13 H 1.08999 * 110.00319 * 305.59852 * 12 11 2 14 14 C 1.54327 * 109.87693 * 66.69328 * 12 11 2 15 15 C 1.55157 * 102.94139 * 141.60752 * 14 12 11 16 16 C 1.55129 * 101.48487 * 324.33441 * 15 14 12 17 17 N 1.47019 * 109.88268 * 184.49796 * 12 11 2 18 18 C 1.34780 * 125.64723 * 61.61072 * 17 12 11 19 19 O 1.21632 * 119.99801 * 354.90671 * 18 17 12 20 20 C 1.47263 * 119.99817 * 174.90733 * 18 17 12 21 21 C 1.35210 * 123.13774 * 179.97438 * 20 18 17 22 22 S 1.70944 * 108.82570 * 179.97438 * 21 20 18 23 23 C 1.70766 * 91.12834 * 0.02562 * 22 21 20 24 24 C 1.50705 * 124.72049 * 179.97438 * 23 22 21 25 25 C 1.53000 * 117.51502 * 351.30574 * 24 23 22 26 26 C 1.52995 * 117.49836 * 59.93324 * 24 23 22 27 27 N 1.28646 * 110.56035 * 0.24260 * 23 22 21 28 28 H 1.09007 * 109.46565 * 273.76472 * 1 2 3 29 29 H 1.09003 * 109.47290 * 33.76052 * 1 2 3 30 30 H 1.08992 * 109.47296 * 153.76290 * 1 2 3 31 31 H 0.96998 * 120.00221 * 179.97438 * 6 5 3 32 32 H 1.09006 * 109.46794 * 154.27018 * 11 2 1 33 33 H 1.09000 * 109.47117 * 34.27589 * 11 2 1 34 34 H 1.08997 * 110.72138 * 259.97136 * 14 12 11 35 35 H 1.08998 * 110.72024 * 23.07011 * 14 12 11 36 36 H 1.09010 * 111.00346 * 82.57005 * 15 14 12 37 37 H 1.09002 * 111.00940 * 206.41897 * 15 14 12 38 38 H 1.09000 * 110.49276 * 278.44976 * 16 15 14 39 39 H 1.09002 * 110.34503 * 156.06101 * 16 15 14 40 40 H 1.07999 * 125.58891 * 0.03137 * 21 20 18 41 41 H 1.08998 * 115.54931 * 205.61400 * 24 23 22 42 42 H 1.08994 * 117.49958 * 214.96927 * 25 24 23 43 43 H 1.08999 * 117.50322 * 359.97438 * 25 24 23 44 44 H 1.08998 * 117.49788 * 359.97438 * 26 24 23 45 45 H 1.09005 * 117.49922 * 144.97356 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2291 1.1862 0.0340 5 6 1.4563 2.3876 -0.0439 6 7 0.2844 2.4932 0.5459 7 14 2.1866 3.8552 -0.9397 8 1 1.6534 3.9050 -2.3247 9 1 1.8217 5.1039 -0.2236 10 1 3.6651 3.7232 -0.9828 11 6 2.1975 -1.2688 -0.0006 12 6 2.3595 -1.7648 1.4377 13 1 2.8244 -0.9911 2.0488 14 6 0.9809 -2.1378 2.0225 15 6 1.2909 -3.4054 2.8618 16 6 2.3787 -4.0917 1.9945 17 7 3.1854 -2.9809 1.4572 18 6 4.4662 -3.0673 1.0463 19 8 5.0046 -2.1076 0.5282 20 6 5.2135 -4.3235 1.2248 21 6 6.4990 -4.4804 0.8363 22 16 7.0001 -6.0700 1.2161 23 6 5.4653 -6.4335 1.8706 24 6 5.0787 -7.7633 2.4650 25 6 6.0622 -8.9238 2.3007 26 6 5.8833 -8.2603 3.6677 27 7 4.6832 -5.4161 1.7806 28 1 -0.3633 0.0675 1.0255 29 1 -0.3634 0.8544 -0.5711 30 1 -0.3633 -0.9217 -0.4543 31 1 -0.2000 3.3330 0.5156 32 1 3.1809 -1.1203 -0.4467 33 1 1.6437 -2.0078 -0.5797 34 1 0.6023 -1.3374 2.6583 35 1 0.2722 -2.3634 1.2257 36 1 1.6808 -3.1380 3.8440 37 1 0.4088 -4.0392 2.9528 38 1 1.9197 -4.6549 1.1819 39 1 2.9964 -4.7463 2.6093 40 1 7.1096 -3.7249 0.3642 41 1 4.0146 -7.9981 2.4396 42 1 5.6451 -9.9219 2.1674 43 1 6.9889 -8.7257 1.7622 44 1 6.6926 -7.6256 4.0287 45 1 5.3485 -8.8216 4.4339 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725061746.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:54 Heat of formation + Delta-G solvation = 58.973477 kcal Electronic energy + Delta-G solvation = -26830.130348 eV Core-core repulsion = 23168.986767 eV Total energy + Delta-G solvation = -3661.143581 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.82481 -40.33486 -38.74944 -37.89560 -37.18928 -33.67008 -32.64607 -31.57437 -30.65557 -28.12099 -27.19893 -26.83149 -25.34271 -23.44011 -23.27435 -22.72281 -21.80495 -21.38319 -20.23217 -19.21031 -18.75731 -17.78452 -17.22500 -17.10233 -16.69125 -16.51621 -15.87421 -15.60463 -15.47755 -15.19086 -14.98142 -14.73144 -14.61152 -14.37864 -13.95246 -13.65768 -13.47735 -13.28006 -13.22633 -12.99380 -12.81640 -12.58629 -12.39528 -12.36239 -12.15890 -12.06635 -11.94369 -11.85977 -11.67622 -11.58120 -11.46217 -11.14517 -10.63806 -10.59189 -10.42999 -9.93569 -9.66095 -8.97822 -8.01413 -5.15725 -0.57637 0.17492 0.52042 0.83097 1.40789 1.44170 1.53532 1.94215 2.19886 2.49265 2.71044 3.01015 3.10379 3.49011 3.62961 3.76649 3.80614 3.87114 4.02204 4.04679 4.06987 4.13418 4.31776 4.39332 4.42254 4.45599 4.61400 4.77755 4.78504 4.80062 4.91309 5.00473 5.02052 5.05354 5.09729 5.12776 5.16044 5.24426 5.33238 5.38545 5.48965 5.56323 5.70271 6.19991 6.34211 6.52268 7.01975 7.08567 7.82790 8.22449 9.07589 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.021821 B = 0.002806 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.855752 B = 9976.054481 C =10996.472411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.167 3.833 2 N -0.612 5.612 3 C -0.271 4.271 4 H 0.058 0.942 5 C -0.039 4.039 6 N -0.914 5.914 7 Si 0.944 3.056 8 H -0.284 1.284 9 H -0.290 1.290 10 H -0.280 1.280 11 C 0.154 3.846 12 C 0.121 3.879 13 H 0.033 0.967 14 C -0.108 4.108 15 C -0.122 4.122 16 C 0.101 3.899 17 N -0.595 5.595 18 C 0.588 3.412 19 O -0.577 6.577 20 C 0.000 4.000 21 C -0.248 4.248 22 S 0.293 5.707 23 C 0.047 3.953 24 C -0.106 4.106 25 C -0.154 4.154 26 C -0.154 4.154 27 N -0.456 5.456 28 H 0.003 0.997 29 H 0.039 0.961 30 H 0.031 0.969 31 H 0.253 0.747 32 H 0.035 0.965 33 H 0.051 0.949 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.114 0.886 38 H 0.071 0.929 39 H 0.114 0.886 40 H 0.186 0.814 41 H 0.139 0.861 42 H 0.130 0.870 43 H 0.102 0.898 44 H 0.097 0.903 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.280 -30.060 6.656 32.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.336 5.336 3 C -0.400 4.400 4 H 0.076 0.924 5 C -0.235 4.235 6 N -0.560 5.560 7 Si 0.773 3.227 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.027 3.973 12 C 0.015 3.985 13 H 0.051 0.949 14 C -0.146 4.146 15 C -0.160 4.160 16 C -0.020 4.020 17 N -0.326 5.326 18 C 0.375 3.625 19 O -0.458 6.458 20 C -0.135 4.135 21 C -0.390 4.390 22 S 0.552 5.448 23 C -0.231 4.231 24 C -0.128 4.128 25 C -0.192 4.192 26 C -0.193 4.193 27 N -0.171 5.171 28 H 0.021 0.979 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.132 0.868 38 H 0.090 0.910 39 H 0.132 0.868 40 H 0.204 0.796 41 H 0.157 0.843 42 H 0.148 0.852 43 H 0.121 0.879 44 H 0.116 0.884 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 10.874 -29.996 6.426 32.547 hybrid contribution -0.283 2.756 -0.639 2.843 sum 10.591 -27.240 5.787 29.794 Atomic orbital electron populations 1.20874 0.81728 0.97284 0.97892 1.44242 1.02556 1.00994 1.85773 1.19324 0.90540 0.84891 1.45207 0.92414 1.25286 0.97589 0.99450 1.01155 1.70398 1.17544 1.26104 1.41944 0.85586 0.78101 0.79447 0.79611 1.21104 1.21661 1.20532 1.21052 0.95475 0.86895 0.93923 1.22355 0.91618 0.85478 0.99064 0.94914 1.22507 0.93948 0.98501 0.99668 1.22890 0.99445 0.95818 0.97799 1.22848 0.92723 0.88599 0.97864 1.48531 1.10473 1.12422 1.61214 1.17321 0.80688 0.86311 0.78201 1.90815 1.69562 1.39455 1.45942 1.20043 0.93239 0.93960 1.06266 1.26855 0.99639 1.05592 1.06950 1.82285 1.13101 0.99752 1.49614 1.26913 0.94837 0.98752 1.02579 1.20561 1.00424 0.86980 1.04805 1.23304 0.99445 0.97008 0.99476 1.23279 1.01689 1.02602 0.91710 1.66918 1.34911 0.98552 1.16754 0.97887 0.94256 0.95032 0.93777 0.94695 0.93069 0.91758 0.90376 0.90857 0.86813 0.91026 0.86809 0.79634 0.84301 0.85224 0.87921 0.88413 0.85804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.50 7.79 127.77 1.00 9.50 16 2 N -0.61 -33.52 2.88 -726.92 -2.10 -35.62 16 3 C -0.27 -16.50 9.64 84.03 0.81 -15.69 16 4 H 0.06 3.68 8.00 -2.91 -0.02 3.66 16 5 C -0.04 -2.31 4.84 84.86 0.41 -1.90 16 6 N -0.91 -55.55 10.80 21.65 0.23 -55.31 16 7 Si 0.94 48.04 29.66 68.60 2.03 50.08 16 8 H -0.28 -14.17 7.11 99.48 0.71 -13.47 16 9 H -0.29 -14.43 7.11 99.48 0.71 -13.73 16 10 H -0.28 -14.17 7.11 99.48 0.71 -13.46 16 11 C 0.15 7.39 5.21 86.38 0.45 7.84 16 12 C 0.12 5.11 3.15 45.34 0.14 5.26 16 13 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 14 C -0.11 -3.71 5.22 31.78 0.17 -3.55 16 15 C -0.12 -3.04 7.10 32.06 0.23 -2.81 16 16 C 0.10 2.75 6.25 86.93 0.54 3.30 16 17 N -0.59 -21.89 3.06 -791.63 -2.43 -24.31 16 18 C 0.59 23.09 7.64 86.62 0.66 23.75 16 19 O -0.58 -27.51 15.50 -4.13 -0.06 -27.57 16 20 C 0.00 -0.01 6.62 40.56 0.27 0.26 16 21 C -0.25 -6.07 10.62 67.12 0.71 -5.36 16 22 S 0.29 4.26 21.65 -56.49 -1.22 3.03 16 23 C 0.05 0.83 6.99 88.58 0.62 1.45 16 24 C -0.11 -1.11 6.33 -11.54 -0.07 -1.18 16 25 C -0.15 -0.76 10.01 30.59 0.31 -0.46 16 26 C -0.15 -0.98 10.23 30.59 0.31 -0.66 16 27 N -0.46 -11.25 7.26 -180.84 -1.31 -12.57 16 28 H 0.00 0.15 7.65 -2.38 -0.02 0.13 16 29 H 0.04 2.20 6.11 -2.39 -0.01 2.19 16 30 H 0.03 1.36 7.68 -2.39 -0.02 1.35 16 31 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 32 H 0.03 1.87 6.41 -2.38 -0.02 1.86 16 33 H 0.05 2.24 7.83 -2.39 -0.02 2.23 16 34 H 0.06 2.43 8.03 -2.39 -0.02 2.41 16 35 H 0.08 2.61 6.97 -2.39 -0.02 2.59 16 36 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 37 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.11 2.89 5.70 -2.39 -0.01 2.88 16 40 H 0.19 4.54 8.03 -2.91 -0.02 4.52 16 41 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.13 0.20 8.14 -2.39 -0.02 0.18 16 43 H 0.10 0.43 7.21 -2.39 -0.02 0.41 16 44 H 0.10 0.68 8.14 -2.39 -0.02 0.67 16 45 H 0.12 0.43 8.14 -2.38 -0.02 0.41 16 Total: -1.00 -77.83 372.84 2.70 -75.13 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: 1.00 Total: 7.40 kcal Atomic # 6 Polarization: 13.18 SS G_CDS: 6.55 Total: 19.73 kcal Atomic # 7 Polarization: -122.21 SS G_CDS: -5.60 Total: -127.81 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -0.06 Total: -27.57 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 2.03 Total: 50.08 kcal Atomic # 16 Polarization: 4.26 SS G_CDS: -1.22 Total: 3.03 kcal Total: -77.83 2.70 -75.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725061746.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.103 kcal (2) G-P(sol) polarization free energy of solvation -77.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds