Wall clock time and date at job start Tue Mar 31 2020 18:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34774 * 120.00044 * 2 1 4 4 O 1.21630 * 120.00200 * 176.43413 * 3 2 1 5 5 C 1.47267 * 119.99878 * 356.43673 * 3 2 1 6 6 C 1.35204 * 123.14133 * 186.40725 * 5 3 2 7 7 S 1.70937 * 108.82802 * 179.97438 * 6 5 3 8 8 C 1.70770 * 91.12903 * 359.97438 * 7 6 5 9 9 C 1.50698 * 124.71760 * 180.02562 * 8 7 6 10 10 C 1.53002 * 117.50201 * 8.60488 * 9 8 7 11 11 C 1.53000 * 117.50586 * 299.97856 * 9 8 7 12 12 N 1.28642 * 110.55920 * 359.76774 * 8 7 6 13 13 C 1.46503 * 119.99729 * 180.02562 * 2 1 3 14 14 H 1.09010 * 109.46700 * 179.97438 * 13 2 1 15 15 C 1.53000 * 109.47381 * 60.00169 * 13 2 1 16 16 N 1.46493 * 109.47478 * 54.99245 * 15 13 2 17 17 C 1.36938 * 120.00303 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99863 * 0.02562 * 17 16 15 19 19 C 1.38812 * 120.00312 * 180.02562 * 17 16 15 20 20 N 1.31621 * 120.00315 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99873 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47003 * 89.99805 * 21 19 17 23 23 H 1.48496 * 109.47013 * 209.99728 * 21 19 17 24 24 H 1.48495 * 109.47077 * 329.99898 * 21 19 17 25 25 C 1.52998 * 109.47333 * 299.99521 * 13 2 1 26 26 C 1.53000 * 117.49869 * 231.25579 * 25 13 2 27 27 C 1.53002 * 117.49986 * 299.91620 * 25 13 2 28 28 H 1.09007 * 109.46685 * 275.89802 * 1 2 3 29 29 H 1.08999 * 109.47696 * 35.90129 * 1 2 3 30 30 H 1.09004 * 109.47170 * 155.90690 * 1 2 3 31 31 H 1.08001 * 125.58415 * 359.95850 * 6 5 3 32 32 H 1.09007 * 115.54493 * 154.30738 * 9 8 7 33 33 H 1.08996 * 117.49551 * 359.97438 * 10 9 8 34 34 H 1.08995 * 117.50071 * 145.01967 * 10 9 8 35 35 H 1.08997 * 117.50596 * 214.98564 * 11 9 8 36 36 H 1.09006 * 117.49486 * 359.97438 * 11 9 8 37 37 H 1.09001 * 109.47264 * 174.99898 * 15 13 2 38 38 H 1.09003 * 109.46510 * 294.99795 * 15 13 2 39 39 H 0.97005 * 120.00388 * 0.02562 * 16 15 13 40 40 H 0.96995 * 119.99811 * 180.02562 * 20 19 17 41 41 H 1.08999 * 115.54986 * 85.58622 * 25 13 2 42 42 H 1.09000 * 117.49643 * 215.00111 * 26 25 13 43 43 H 1.08994 * 117.49939 * 0.02562 * 26 25 13 44 44 H 1.09000 * 117.49345 * 359.97438 * 27 25 13 45 45 H 1.08998 * 117.50055 * 144.99610 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3534 1.1682 0.0655 5 6 1.4046 2.4413 -0.0793 6 6 2.0163 3.6400 -0.2102 7 16 0.8246 4.8642 -0.2660 8 6 -0.4208 3.7059 -0.1122 9 6 -1.8926 4.0276 -0.0782 10 6 -2.3088 5.4664 -0.3903 11 6 -2.3906 4.9404 1.0441 12 7 0.0721 2.5202 -0.0349 13 6 2.1974 -1.2688 -0.0006 14 1 3.2692 -1.0696 -0.0009 15 6 1.8279 -2.0705 -1.2502 16 7 2.0705 -1.2554 -2.4429 17 6 1.8101 -1.7667 -3.6863 18 1 1.4255 -2.7707 -3.7876 19 6 2.0406 -0.9945 -4.8166 20 7 1.7908 -1.4861 -6.0117 21 14 2.7066 0.7420 -4.6414 22 1 4.1910 0.7077 -4.6662 23 1 2.2120 1.5775 -5.7651 24 1 2.2462 1.3212 -3.3539 25 6 1.8279 -2.0716 1.2483 26 6 2.9742 -2.6068 2.1089 27 6 2.1229 -1.4371 2.6090 28 1 -0.3633 0.1056 1.0223 29 1 -0.3634 0.8324 -0.6026 30 1 -0.3634 -0.9382 -0.4195 31 1 3.0830 3.7980 -0.2695 32 1 -2.5562 3.2284 -0.4087 33 1 -1.5179 6.1805 -0.6199 34 1 -3.2463 5.6142 -0.9263 35 1 -3.3819 4.7422 1.4518 36 1 -1.6536 5.3081 1.7582 37 1 2.4376 -2.9729 -1.2965 38 1 0.7741 -2.3459 -1.2066 39 1 2.4157 -0.3534 -2.3520 40 1 1.9522 -0.9465 -6.8014 41 1 0.9324 -2.6871 1.1636 42 1 2.8327 -3.5745 2.5903 43 1 3.9915 -2.3867 1.7855 44 1 2.5805 -0.4478 2.6143 45 1 1.4213 -1.6351 3.4194 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725472273.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:13 Heat of formation + Delta-G solvation = 97.115616 kcal Electronic energy + Delta-G solvation = -27367.692799 eV Core-core repulsion = 23708.203185 eV Total energy + Delta-G solvation = -3659.489614 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.73372 -39.19412 -37.66774 -37.07307 -35.27288 -34.02144 -31.44519 -30.62456 -28.90932 -26.49197 -26.18280 -24.34301 -23.31757 -22.84721 -22.27520 -21.25798 -20.93556 -19.98986 -19.16109 -18.29720 -17.62875 -16.69139 -16.11682 -16.02510 -15.70818 -15.00615 -14.86283 -14.72768 -14.13451 -14.11559 -13.85073 -13.50613 -13.24908 -12.76456 -12.68106 -12.55878 -12.39678 -12.07314 -11.98121 -11.80485 -11.67305 -11.46562 -11.20365 -11.10083 -10.96550 -10.92572 -10.74452 -10.34962 -10.14410 -10.05258 -9.86444 -9.71469 -9.55875 -9.39752 -8.94165 -8.86099 -8.25966 -7.18051 -5.73635 -3.07608 0.40592 1.06050 1.46674 1.92614 3.13144 3.36898 3.41440 3.46858 3.49320 3.51979 3.66230 4.02869 4.36592 4.51486 4.55029 4.63801 4.66572 4.88179 5.01316 5.05265 5.09530 5.19548 5.23363 5.36557 5.41389 5.53543 5.57429 5.62063 5.64059 5.69513 5.70585 5.74208 5.82996 5.91919 5.95827 6.04549 6.19910 6.29989 6.44575 6.51019 6.66971 6.93072 7.33799 7.64912 8.02633 8.34780 8.45881 9.25404 9.98639 10.19046 11.44839 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.008824 B = 0.005053 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3172.331450 B = 5540.460950 C = 7380.211338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.573 5.573 3 C 0.590 3.410 4 O -0.543 6.543 5 C 0.024 3.976 6 C -0.229 4.229 7 S 0.200 5.800 8 C 0.052 3.948 9 C -0.083 4.083 10 C -0.170 4.170 11 C -0.159 4.159 12 N -0.427 5.427 13 C 0.156 3.844 14 H 0.101 0.899 15 C 0.153 3.847 16 N -0.752 5.752 17 C -0.239 4.239 18 H 0.091 0.909 19 C 0.007 3.993 20 N -0.934 5.934 21 Si 0.879 3.121 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.280 1.280 25 C -0.157 4.157 26 C -0.169 4.169 27 C -0.171 4.171 28 H 0.048 0.952 29 H 0.103 0.897 30 H 0.067 0.933 31 H 0.189 0.811 32 H 0.136 0.864 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.041 0.959 38 H 0.031 0.969 39 H 0.362 0.638 40 H 0.259 0.741 41 H 0.109 0.891 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.090 0.910 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.770 13.133 19.011 24.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.303 5.303 3 C 0.375 3.625 4 O -0.421 6.421 5 C -0.111 4.111 6 C -0.371 4.371 7 S 0.457 5.543 8 C -0.227 4.227 9 C -0.105 4.105 10 C -0.208 4.208 11 C -0.198 4.198 12 N -0.143 5.143 13 C 0.053 3.947 14 H 0.119 0.881 15 C 0.024 3.976 16 N -0.397 5.397 17 C -0.369 4.369 18 H 0.109 0.891 19 C -0.188 4.188 20 N -0.583 5.583 21 Si 0.710 3.290 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.176 4.176 26 C -0.207 4.207 27 C -0.209 4.209 28 H 0.067 0.933 29 H 0.120 0.880 30 H 0.086 0.914 31 H 0.206 0.794 32 H 0.154 0.846 33 H 0.116 0.884 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.117 0.883 37 H 0.059 0.941 38 H 0.049 0.951 39 H 0.195 0.805 40 H 0.069 0.931 41 H 0.127 0.873 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.108 0.892 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.515 13.543 18.798 24.356 hybrid contribution 0.937 0.268 -0.105 0.980 sum -6.578 13.811 18.693 24.155 Atomic orbital electron populations 1.22213 0.78262 1.04277 1.01671 1.47508 1.07927 1.04655 1.70197 1.17092 0.86185 0.82304 0.76911 1.90785 1.12766 1.86766 1.51759 1.20438 0.88293 0.95167 1.07177 1.26585 1.06919 0.96039 1.07576 1.82600 0.95557 1.11454 1.64643 1.26400 1.00059 0.91690 1.04512 1.20403 0.88291 0.95717 1.06077 1.23160 1.03946 0.94568 0.99096 1.23142 1.03312 1.01709 0.91627 1.67211 1.09997 1.22052 1.15015 1.21078 0.97770 0.82238 0.93639 0.88100 1.20932 0.98516 0.93391 0.84713 1.42640 1.80150 1.14789 1.02162 1.19045 1.36332 0.99848 0.81680 0.89110 1.24595 1.01464 0.97631 0.95125 1.69696 1.54857 1.36860 0.96839 0.86614 0.79336 0.86455 0.76633 1.20983 1.21744 1.20658 1.22538 1.00663 1.02966 0.91441 1.22980 0.96255 0.98069 1.03391 1.22816 1.03417 0.97843 0.96775 0.93326 0.87962 0.91385 0.79393 0.84581 0.88364 0.87087 0.87387 0.88288 0.94142 0.95112 0.80508 0.93140 0.87305 0.88687 0.88604 0.89155 0.89087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 8.85 59.85 0.53 1.77 16 2 N -0.57 -10.22 2.13 -175.25 -0.37 -10.60 16 3 C 0.59 11.38 7.35 -12.59 -0.09 11.29 16 4 O -0.54 -11.64 16.06 5.25 0.08 -11.56 16 5 C 0.02 0.40 6.50 -84.53 -0.55 -0.15 16 6 C -0.23 -3.31 10.62 29.65 0.31 -2.99 16 7 S 0.20 2.12 21.65 -107.50 -2.33 -0.21 16 8 C 0.05 0.62 6.99 -13.61 -0.10 0.53 16 9 C -0.08 -0.74 6.33 -91.77 -0.58 -1.32 16 10 C -0.17 -1.09 10.01 -26.73 -0.27 -1.35 16 11 C -0.16 -1.00 10.23 -26.73 -0.27 -1.28 16 12 N -0.43 -6.42 6.73 -8.51 -0.06 -6.48 16 13 C 0.16 2.74 2.37 -67.93 -0.16 2.58 16 14 H 0.10 1.97 6.66 -51.92 -0.35 1.62 16 15 C 0.15 3.11 5.50 -4.05 -0.02 3.09 16 16 N -0.75 -19.17 5.24 -59.91 -0.31 -19.49 16 17 C -0.24 -7.06 10.47 -15.06 -0.16 -7.22 16 18 H 0.09 2.81 8.06 -52.49 -0.42 2.39 16 19 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 20 N -0.93 -30.23 13.97 55.49 0.78 -29.45 16 21 Si 0.88 23.94 27.74 -169.99 -4.71 19.22 16 22 H -0.28 -7.74 7.11 56.52 0.40 -7.34 16 23 H -0.29 -7.85 7.11 56.52 0.40 -7.45 16 24 H -0.28 -7.52 6.52 56.52 0.37 -7.15 16 25 C -0.16 -2.16 4.83 -90.62 -0.44 -2.59 16 26 C -0.17 -2.06 10.18 -26.69 -0.27 -2.33 16 27 C -0.17 -2.15 10.13 -26.69 -0.27 -2.42 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.10 1.73 5.18 -51.93 -0.27 1.46 16 30 H 0.07 1.07 6.54 -51.93 -0.34 0.73 16 31 H 0.19 2.54 8.04 -52.49 -0.42 2.12 16 32 H 0.14 1.18 8.14 -51.92 -0.42 0.76 16 33 H 0.10 0.61 7.21 -51.93 -0.37 0.23 16 34 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.03 0.62 6.87 -51.93 -0.36 0.26 16 39 H 0.36 9.53 4.93 -40.82 -0.20 9.33 16 40 H 0.26 7.98 8.31 -40.82 -0.34 7.64 16 41 H 0.11 1.39 8.11 -51.93 -0.42 0.97 16 42 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.10 1.22 8.05 -51.93 -0.42 0.80 16 44 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 381.35 15.07 5.75 5.75 Total: -1.00 -35.49 381.35 -10.16 -45.64 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -6.54 Total: 9.44 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -2.43 Total: -2.26 kcal Atomic # 7 Polarization: -66.05 SS G_CDS: 0.03 Total: -66.02 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.08 Total: -11.56 kcal Atomic # 14 Polarization: 23.94 SS G_CDS: -4.71 Total: 19.22 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -2.33 Total: -0.21 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.49 -10.16 -45.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725472273.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.760 kcal (2) G-P(sol) polarization free energy of solvation -35.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds