Wall clock time and date at job start Tue Mar 31 2020 18:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34774 * 120.00044 * 2 1 4 4 O 1.21630 * 120.00200 * 176.43413 * 3 2 1 5 5 C 1.47267 * 119.99878 * 356.43673 * 3 2 1 6 6 C 1.35204 * 123.14133 * 186.40725 * 5 3 2 7 7 S 1.70937 * 108.82802 * 179.97438 * 6 5 3 8 8 C 1.70770 * 91.12903 * 359.97438 * 7 6 5 9 9 C 1.50698 * 124.71760 * 180.02562 * 8 7 6 10 10 C 1.53002 * 117.50201 * 8.60488 * 9 8 7 11 11 C 1.53000 * 117.50586 * 299.97856 * 9 8 7 12 12 N 1.28642 * 110.55920 * 359.76774 * 8 7 6 13 13 C 1.46503 * 119.99729 * 180.02562 * 2 1 3 14 14 H 1.09010 * 109.46700 * 179.97438 * 13 2 1 15 15 C 1.53000 * 109.47381 * 60.00169 * 13 2 1 16 16 N 1.46493 * 109.47478 * 54.99245 * 15 13 2 17 17 C 1.36938 * 120.00303 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99863 * 0.02562 * 17 16 15 19 19 C 1.38812 * 120.00312 * 180.02562 * 17 16 15 20 20 N 1.31621 * 120.00315 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99873 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47003 * 89.99805 * 21 19 17 23 23 H 1.48496 * 109.47013 * 209.99728 * 21 19 17 24 24 H 1.48495 * 109.47077 * 329.99898 * 21 19 17 25 25 C 1.52998 * 109.47333 * 299.99521 * 13 2 1 26 26 C 1.53000 * 117.49869 * 231.25579 * 25 13 2 27 27 C 1.53002 * 117.49986 * 299.91620 * 25 13 2 28 28 H 1.09007 * 109.46685 * 275.89802 * 1 2 3 29 29 H 1.08999 * 109.47696 * 35.90129 * 1 2 3 30 30 H 1.09004 * 109.47170 * 155.90690 * 1 2 3 31 31 H 1.08001 * 125.58415 * 359.95850 * 6 5 3 32 32 H 1.09007 * 115.54493 * 154.30738 * 9 8 7 33 33 H 1.08996 * 117.49551 * 359.97438 * 10 9 8 34 34 H 1.08995 * 117.50071 * 145.01967 * 10 9 8 35 35 H 1.08997 * 117.50596 * 214.98564 * 11 9 8 36 36 H 1.09006 * 117.49486 * 359.97438 * 11 9 8 37 37 H 1.09001 * 109.47264 * 174.99898 * 15 13 2 38 38 H 1.09003 * 109.46510 * 294.99795 * 15 13 2 39 39 H 0.97005 * 120.00388 * 0.02562 * 16 15 13 40 40 H 0.96995 * 119.99811 * 180.02562 * 20 19 17 41 41 H 1.08999 * 115.54986 * 85.58622 * 25 13 2 42 42 H 1.09000 * 117.49643 * 215.00111 * 26 25 13 43 43 H 1.08994 * 117.49939 * 0.02562 * 26 25 13 44 44 H 1.09000 * 117.49345 * 359.97438 * 27 25 13 45 45 H 1.08998 * 117.50055 * 144.99610 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3534 1.1682 0.0655 5 6 1.4046 2.4413 -0.0793 6 6 2.0163 3.6400 -0.2102 7 16 0.8246 4.8642 -0.2660 8 6 -0.4208 3.7059 -0.1122 9 6 -1.8926 4.0276 -0.0782 10 6 -2.3088 5.4664 -0.3903 11 6 -2.3906 4.9404 1.0441 12 7 0.0721 2.5202 -0.0349 13 6 2.1974 -1.2688 -0.0006 14 1 3.2692 -1.0696 -0.0009 15 6 1.8279 -2.0705 -1.2502 16 7 2.0705 -1.2554 -2.4429 17 6 1.8101 -1.7667 -3.6863 18 1 1.4255 -2.7707 -3.7876 19 6 2.0406 -0.9945 -4.8166 20 7 1.7908 -1.4861 -6.0117 21 14 2.7066 0.7420 -4.6414 22 1 4.1910 0.7077 -4.6662 23 1 2.2120 1.5775 -5.7651 24 1 2.2462 1.3212 -3.3539 25 6 1.8279 -2.0716 1.2483 26 6 2.9742 -2.6068 2.1089 27 6 2.1229 -1.4371 2.6090 28 1 -0.3633 0.1056 1.0223 29 1 -0.3634 0.8324 -0.6026 30 1 -0.3634 -0.9382 -0.4195 31 1 3.0830 3.7980 -0.2695 32 1 -2.5562 3.2284 -0.4087 33 1 -1.5179 6.1805 -0.6199 34 1 -3.2463 5.6142 -0.9263 35 1 -3.3819 4.7422 1.4518 36 1 -1.6536 5.3081 1.7582 37 1 2.4376 -2.9729 -1.2965 38 1 0.7741 -2.3459 -1.2066 39 1 2.4157 -0.3534 -2.3520 40 1 1.9522 -0.9465 -6.8014 41 1 0.9324 -2.6871 1.1636 42 1 2.8327 -3.5745 2.5903 43 1 3.9915 -2.3867 1.7855 44 1 2.5805 -0.4478 2.6143 45 1 1.4213 -1.6351 3.4194 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725472273.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:12 Heat of formation + Delta-G solvation = 75.389910 kcal Electronic energy + Delta-G solvation = -27368.634896 eV Core-core repulsion = 23708.203185 eV Total energy + Delta-G solvation = -3660.431711 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.94366 -40.35615 -38.74673 -37.93624 -36.82897 -35.76837 -33.57331 -31.70316 -30.56944 -27.83539 -27.29296 -25.94982 -24.63231 -23.32607 -23.27236 -22.96302 -21.84614 -21.17511 -20.44750 -19.72880 -19.43806 -17.79214 -17.23896 -17.15790 -16.96119 -16.70366 -16.26499 -15.80399 -15.59202 -15.24485 -15.07691 -14.91038 -14.78213 -14.55711 -14.10505 -13.68992 -13.65060 -13.53855 -13.30469 -13.03742 -12.83817 -12.74081 -12.45295 -12.39568 -12.35971 -12.13023 -11.92306 -11.89737 -11.58701 -11.46399 -11.22624 -11.12358 -11.01777 -10.69130 -10.46535 -9.94989 -9.58437 -9.37806 -8.11954 -5.42746 -0.62745 0.13402 0.47304 0.79122 1.21445 1.24838 1.30709 1.85472 2.15175 2.35357 2.67617 2.94265 2.98200 3.20039 3.29987 3.54754 3.78263 3.80889 3.93424 3.95921 4.02534 4.05859 4.08507 4.17018 4.33228 4.36257 4.41014 4.49238 4.57034 4.73851 4.75716 4.79436 4.86280 4.96843 4.98471 5.00567 5.08417 5.20025 5.21019 5.23560 5.24946 5.54814 5.67963 6.12822 6.20372 6.39135 6.96105 6.97546 7.74518 7.92841 9.09708 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.008824 B = 0.005053 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3172.331450 B = 5540.460950 C = 7380.211338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.574 5.574 3 C 0.578 3.422 4 O -0.580 6.580 5 C -0.008 4.008 6 C -0.253 4.253 7 S 0.287 5.713 8 C 0.044 3.956 9 C -0.111 4.111 10 C -0.158 4.158 11 C -0.144 4.144 12 N -0.451 5.451 13 C 0.163 3.837 14 H 0.076 0.924 15 C 0.150 3.850 16 N -0.757 5.757 17 C -0.226 4.226 18 H 0.069 0.931 19 C -0.050 4.050 20 N -0.975 5.975 21 Si 0.939 3.061 22 H -0.285 1.285 23 H -0.284 1.284 24 H -0.279 1.279 25 C -0.165 4.165 26 C -0.159 4.159 27 C -0.161 4.161 28 H 0.069 0.931 29 H 0.094 0.906 30 H 0.065 0.935 31 H 0.188 0.812 32 H 0.134 0.866 33 H 0.102 0.898 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.102 0.898 37 H 0.044 0.956 38 H 0.042 0.958 39 H 0.358 0.642 40 H 0.259 0.741 41 H 0.126 0.874 42 H 0.122 0.878 43 H 0.084 0.916 44 H 0.068 0.932 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.373 14.950 21.001 27.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.303 5.303 3 C 0.364 3.636 4 O -0.461 6.461 5 C -0.143 4.143 6 C -0.396 4.396 7 S 0.547 5.453 8 C -0.234 4.234 9 C -0.133 4.133 10 C -0.196 4.196 11 C -0.182 4.182 12 N -0.167 5.167 13 C 0.060 3.940 14 H 0.094 0.906 15 C 0.023 3.977 16 N -0.402 5.402 17 C -0.357 4.357 18 H 0.087 0.913 19 C -0.242 4.242 20 N -0.626 5.626 21 Si 0.769 3.231 22 H -0.211 1.211 23 H -0.210 1.210 24 H -0.205 1.205 25 C -0.184 4.184 26 C -0.197 4.197 27 C -0.198 4.198 28 H 0.087 0.913 29 H 0.112 0.888 30 H 0.084 0.916 31 H 0.205 0.795 32 H 0.152 0.848 33 H 0.120 0.880 34 H 0.146 0.854 35 H 0.144 0.856 36 H 0.120 0.880 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.190 0.810 40 H 0.068 0.932 41 H 0.144 0.856 42 H 0.141 0.859 43 H 0.103 0.897 44 H 0.086 0.914 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.146 15.361 20.830 27.450 hybrid contribution 1.372 -0.269 -0.676 1.553 sum -7.774 15.092 20.154 26.351 Atomic orbital electron populations 1.22233 0.77055 1.03706 1.02789 1.47643 1.08662 1.04437 1.69570 1.17578 0.86102 0.83505 0.76376 1.90737 1.14251 1.87477 1.53652 1.20275 0.89421 0.94680 1.09899 1.26874 1.08240 0.97188 1.07290 1.82196 0.92506 1.08302 1.62335 1.27033 1.01984 0.91653 1.02738 1.20556 0.86339 0.97193 1.09212 1.23312 1.04626 0.92344 0.99317 1.23272 1.04055 0.99486 0.91422 1.67167 1.09052 1.23791 1.16696 1.20898 0.96478 0.82488 0.94149 0.90553 1.21129 0.99065 0.93303 0.84166 1.42714 1.79991 1.15052 1.02420 1.19079 1.34438 0.98813 0.83321 0.91268 1.25211 1.02808 1.01181 0.94975 1.69822 1.56843 1.38361 0.97547 0.85647 0.78397 0.82450 0.76612 1.21143 1.20989 1.20503 1.22423 1.02218 1.03552 0.90208 1.23083 0.95170 0.99192 1.02218 1.22804 1.03635 0.96943 0.96423 0.91286 0.88822 0.91599 0.79464 0.84823 0.87969 0.85395 0.85608 0.87998 0.93811 0.93977 0.80980 0.93190 0.85622 0.85945 0.89702 0.91357 0.86541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.63 8.85 127.77 1.13 3.76 16 2 N -0.57 -20.69 2.13 -826.62 -1.76 -22.45 16 3 C 0.58 22.88 7.35 86.62 0.64 23.52 16 4 O -0.58 -25.95 16.06 -4.13 -0.07 -26.02 16 5 C -0.01 -0.27 6.50 40.56 0.26 -0.01 16 6 C -0.25 -7.25 10.62 67.12 0.71 -6.53 16 7 S 0.29 5.49 21.65 -56.49 -1.22 4.27 16 8 C 0.04 0.99 6.99 88.58 0.62 1.61 16 9 C -0.11 -1.72 6.33 -11.54 -0.07 -1.79 16 10 C -0.16 -1.49 10.01 30.60 0.31 -1.19 16 11 C -0.14 -1.34 10.23 30.59 0.31 -1.02 16 12 N -0.45 -13.36 6.73 -180.84 -1.22 -14.57 16 13 C 0.16 5.78 2.37 44.99 0.11 5.89 16 14 H 0.08 3.09 6.66 -2.38 -0.02 3.07 16 15 C 0.15 6.14 5.50 86.38 0.48 6.62 16 16 N -0.76 -39.09 5.24 -343.46 -1.80 -40.89 16 17 C -0.23 -13.54 10.47 84.03 0.88 -12.66 16 18 H 0.07 4.40 8.06 -2.91 -0.02 4.38 16 19 C -0.05 -3.08 5.50 84.86 0.47 -2.61 16 20 N -0.97 -64.18 13.97 21.65 0.30 -63.88 16 21 Si 0.94 50.50 27.74 68.60 1.90 52.40 16 22 H -0.28 -15.26 7.11 99.48 0.71 -14.56 16 23 H -0.28 -14.81 7.11 99.48 0.71 -14.10 16 24 H -0.28 -14.78 6.52 99.48 0.65 -14.13 16 25 C -0.16 -4.32 4.83 -10.79 -0.05 -4.37 16 26 C -0.16 -3.60 10.18 30.62 0.31 -3.29 16 27 C -0.16 -3.78 10.13 30.62 0.31 -3.47 16 28 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 29 H 0.09 3.17 5.18 -2.39 -0.01 3.16 16 30 H 0.07 2.03 6.54 -2.38 -0.02 2.02 16 31 H 0.19 5.17 8.04 -2.91 -0.02 5.14 16 32 H 0.13 2.12 8.14 -2.38 -0.02 2.10 16 33 H 0.10 0.88 7.21 -2.39 -0.02 0.87 16 34 H 0.13 0.81 8.14 -2.39 -0.02 0.80 16 35 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.04 1.66 6.87 -2.39 -0.02 1.64 16 39 H 0.36 19.10 4.93 -92.70 -0.46 18.64 16 40 H 0.26 16.24 8.31 -92.71 -0.77 15.47 16 41 H 0.13 2.90 8.11 -2.39 -0.02 2.88 16 42 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.08 2.12 8.05 -2.39 -0.02 2.10 16 44 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -78.90 381.35 3.05 -75.85 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: 0.50 Total: 30.84 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: 6.41 Total: 4.44 kcal Atomic # 7 Polarization: -137.32 SS G_CDS: -4.47 Total: -141.79 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.07 Total: -26.02 kcal Atomic # 14 Polarization: 50.50 SS G_CDS: 1.90 Total: 52.40 kcal Atomic # 16 Polarization: 5.49 SS G_CDS: -1.22 Total: 4.27 kcal Total: -78.90 3.05 -75.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725472273.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.244 kcal (2) G-P(sol) polarization free energy of solvation -78.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds