Wall clock time and date at job start Tue Mar 31 2020 18:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34783 * 119.99844 * 2 1 4 4 O 1.21633 * 120.00005 * 185.44547 * 3 2 1 5 5 C 1.47260 * 119.99964 * 5.44714 * 3 2 1 6 6 C 1.35213 * 123.14297 * 186.24311 * 5 3 2 7 7 S 1.70940 * 108.82841 * 179.97438 * 6 5 3 8 8 C 1.70771 * 91.12916 * 359.97438 * 7 6 5 9 9 C 1.50701 * 124.71875 * 180.02562 * 8 7 6 10 10 C 1.52997 * 117.49994 * 8.60101 * 9 8 7 11 11 C 1.53001 * 117.50121 * 299.97647 * 9 8 7 12 12 N 1.28648 * 110.55944 * 359.76842 * 8 7 6 13 13 C 1.46497 * 120.00175 * 180.02562 * 2 1 3 14 14 H 1.09006 * 109.47030 * 179.97438 * 13 2 1 15 15 C 1.53001 * 109.47074 * 299.99488 * 13 2 1 16 16 N 1.46490 * 109.47097 * 304.99868 * 15 13 2 17 17 C 1.36941 * 119.99702 * 179.72167 * 16 15 13 18 18 H 1.07999 * 120.00135 * 0.02562 * 17 16 15 19 19 C 1.38813 * 119.99623 * 180.02562 * 17 16 15 20 20 N 1.31621 * 120.00600 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99593 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.47507 * 90.00123 * 21 19 17 23 23 H 1.48501 * 109.47174 * 209.99891 * 21 19 17 24 24 H 1.48497 * 109.47256 * 329.99420 * 21 19 17 25 25 C 1.52996 * 109.47068 * 59.99866 * 13 2 1 26 26 C 1.53000 * 117.50099 * 128.74765 * 25 13 2 27 27 C 1.53002 * 117.50355 * 60.08822 * 25 13 2 28 28 H 1.09009 * 109.46544 * 275.34571 * 1 2 3 29 29 H 1.08999 * 109.47512 * 35.34539 * 1 2 3 30 30 H 1.08999 * 109.47134 * 155.35000 * 1 2 3 31 31 H 1.07993 * 125.58450 * 359.96041 * 6 5 3 32 32 H 1.09000 * 115.55277 * 154.31182 * 9 8 7 33 33 H 1.09001 * 117.49672 * 0.02562 * 10 9 8 34 34 H 1.08998 * 117.49853 * 145.01807 * 10 9 8 35 35 H 1.08997 * 117.50602 * 214.97920 * 11 9 8 36 36 H 1.09005 * 117.50043 * 359.97438 * 11 9 8 37 37 H 1.09004 * 109.46955 * 185.00067 * 15 13 2 38 38 H 1.09000 * 109.46831 * 65.00070 * 15 13 2 39 39 H 0.97005 * 120.00443 * 0.02562 * 16 15 13 40 40 H 0.96999 * 119.99950 * 180.02562 * 20 19 17 41 41 H 1.08998 * 115.55114 * 274.41560 * 25 13 2 42 42 H 1.09000 * 117.49997 * 359.97438 * 26 25 13 43 43 H 1.09001 * 117.49915 * 145.01877 * 26 25 13 44 44 H 1.08995 * 117.49797 * 214.98601 * 27 25 13 45 45 H 1.09004 * 117.49300 * 359.96952 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3511 1.1697 -0.1000 5 6 1.4075 2.4397 0.1211 6 6 2.0027 3.6483 0.0059 7 16 0.8207 4.8667 0.2070 8 6 -0.3993 3.6932 0.4324 9 6 -1.8518 4.0033 0.6877 10 6 -2.2980 5.4602 0.5496 11 6 -2.1909 4.8210 1.9356 12 7 0.0932 2.5077 0.3486 13 6 2.1975 -1.2687 -0.0006 14 1 3.2692 -1.0694 -0.0009 15 6 1.8280 -2.0715 1.2484 16 7 2.0709 -1.2573 2.4418 17 6 1.8057 -1.7679 3.6845 18 1 1.4179 -2.7708 3.7847 19 6 2.0353 -0.9962 4.8152 20 7 2.5075 0.2264 4.6931 21 14 1.6743 -1.6928 6.5105 22 1 2.8853 -2.3747 7.0338 23 1 1.2922 -0.5895 7.4280 24 1 0.5583 -2.6681 6.4175 25 6 1.8279 -2.0704 -1.2501 26 6 2.9740 -2.6049 -2.1112 27 6 2.1227 -1.4348 -2.6103 28 1 -0.3633 0.0958 1.0233 29 1 -0.3634 0.8382 -0.5945 30 1 -0.3633 -0.9340 -0.4286 31 1 3.0528 3.8163 -0.1822 32 1 -2.5578 3.2296 0.3860 33 1 -1.5411 6.1944 0.2737 34 1 -3.2977 5.6452 0.1567 35 1 -3.1201 4.5857 2.4545 36 1 -1.3634 5.1345 2.5722 37 1 2.4378 -2.9738 1.2939 38 1 0.7743 -2.3469 1.2047 39 1 2.4154 -0.3550 2.3515 40 1 2.6682 0.7654 5.4833 41 1 0.9324 -2.6860 -1.1659 42 1 3.9915 -2.3850 -1.7878 43 1 2.8324 -3.5720 -2.5938 44 1 1.4213 -1.6324 -3.4208 45 1 2.5796 -0.4451 -2.6148 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725472274.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:17 Heat of formation + Delta-G solvation = 91.674226 kcal Electronic energy + Delta-G solvation = -27245.850510 eV Core-core repulsion = 23586.124939 eV Total energy + Delta-G solvation = -3659.725570 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.51350 -39.01395 -37.51729 -36.90241 -35.07474 -33.84082 -31.23708 -30.40496 -28.43198 -26.32026 -25.94527 -24.22858 -23.30671 -22.68621 -22.21041 -21.39937 -20.79422 -19.80849 -18.94494 -18.10484 -17.10733 -16.49582 -15.97567 -15.88970 -15.26781 -15.11147 -14.83731 -14.45007 -14.14542 -13.79555 -13.70706 -13.24205 -13.02817 -12.84479 -12.49884 -12.42550 -12.14966 -12.02927 -11.80107 -11.54567 -11.45712 -11.37012 -11.02592 -10.88553 -10.81713 -10.80450 -10.65795 -10.21026 -10.17676 -9.91680 -9.69891 -9.61110 -9.51174 -9.33171 -8.80726 -8.74184 -8.07604 -6.82914 -5.66748 -2.95803 0.59950 1.24988 1.65374 2.15107 3.31111 3.47624 3.51993 3.53613 3.53995 3.65802 3.92058 4.11570 4.52920 4.60386 4.68177 4.75230 4.83946 5.04255 5.09535 5.15657 5.23767 5.33747 5.42417 5.48903 5.58386 5.63823 5.72009 5.74870 5.75791 5.79299 5.84219 5.92035 5.97751 6.06423 6.23661 6.27214 6.31208 6.43135 6.54085 6.59406 6.80736 7.08760 7.55158 7.75960 7.84249 8.50345 8.56616 9.61735 10.20916 10.56126 11.55495 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.007823 B = 0.004954 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3578.375750 B = 5650.323574 C = 8028.970140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.573 5.573 3 C 0.595 3.405 4 O -0.540 6.540 5 C 0.029 3.971 6 C -0.228 4.228 7 S 0.191 5.809 8 C 0.053 3.947 9 C -0.081 4.081 10 C -0.171 4.171 11 C -0.158 4.158 12 N -0.424 5.424 13 C 0.161 3.839 14 H 0.100 0.900 15 C 0.149 3.851 16 N -0.727 5.727 17 C -0.237 4.237 18 H 0.069 0.931 19 C -0.013 4.013 20 N -0.929 5.929 21 Si 0.905 3.095 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.158 4.158 26 C -0.170 4.170 27 C -0.171 4.171 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.188 0.812 32 H 0.134 0.866 33 H 0.097 0.903 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.101 0.899 37 H 0.030 0.970 38 H 0.022 0.978 39 H 0.385 0.615 40 H 0.253 0.747 41 H 0.107 0.893 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.126 9.366 -15.178 20.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.303 5.303 3 C 0.380 3.620 4 O -0.418 6.418 5 C -0.105 4.105 6 C -0.370 4.370 7 S 0.448 5.552 8 C -0.226 4.226 9 C -0.103 4.103 10 C -0.210 4.210 11 C -0.197 4.197 12 N -0.139 5.139 13 C 0.058 3.942 14 H 0.118 0.882 15 C 0.020 3.980 16 N -0.371 5.371 17 C -0.369 4.369 18 H 0.087 0.913 19 C -0.209 4.209 20 N -0.578 5.578 21 Si 0.736 3.264 22 H -0.218 1.218 23 H -0.219 1.219 24 H -0.208 1.208 25 C -0.177 4.177 26 C -0.208 4.208 27 C -0.209 4.209 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.205 0.795 32 H 0.152 0.848 33 H 0.116 0.884 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.119 0.881 37 H 0.048 0.952 38 H 0.039 0.961 39 H 0.219 0.781 40 H 0.063 0.937 41 H 0.125 0.875 42 H 0.114 0.886 43 H 0.112 0.888 44 H 0.108 0.892 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.855 9.827 -15.048 20.036 hybrid contribution 0.387 -1.048 1.094 1.564 sum -8.468 8.779 -13.954 18.533 Atomic orbital electron populations 1.21896 0.78583 1.01292 1.03028 1.47405 1.07588 1.04649 1.70627 1.17011 0.86064 0.82196 0.76717 1.90782 1.12981 1.86681 1.51383 1.20401 0.88821 0.95029 1.06287 1.26538 1.06639 0.95873 1.07956 1.82527 0.97779 1.11396 1.63467 1.26285 1.00016 0.91518 1.04813 1.20358 0.89133 0.95990 1.04799 1.23141 1.03360 0.93733 1.00722 1.23155 1.04138 1.01827 0.90609 1.67203 1.10173 1.22805 1.13761 1.20987 0.97737 0.82234 0.93246 0.88187 1.20936 0.97729 0.93457 0.85848 1.42277 1.78695 1.15812 1.00359 1.19200 1.35926 0.98061 0.83676 0.91276 1.24733 1.02200 0.96292 0.97684 1.69699 1.51088 1.08832 1.28172 0.86217 0.77795 0.77615 0.84724 1.21784 1.21893 1.20827 1.22569 1.00482 1.03016 0.91676 1.22968 0.96346 0.97978 1.03463 1.22818 1.03400 0.97908 0.96749 0.91725 0.90188 0.92527 0.79525 0.84835 0.88449 0.87344 0.87395 0.88072 0.95216 0.96072 0.78066 0.93699 0.87542 0.88589 0.88834 0.89190 0.89023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.58 8.32 59.85 0.50 2.08 16 2 N -0.57 -10.73 2.12 -175.26 -0.37 -11.10 16 3 C 0.59 12.11 7.34 -12.59 -0.09 12.01 16 4 O -0.54 -12.28 16.07 5.25 0.08 -12.20 16 5 C 0.03 0.52 6.43 -84.53 -0.54 -0.02 16 6 C -0.23 -3.47 10.62 29.66 0.31 -3.16 16 7 S 0.19 2.19 21.65 -107.50 -2.33 -0.14 16 8 C 0.05 0.70 6.99 -13.61 -0.10 0.60 16 9 C -0.08 -0.82 6.33 -91.77 -0.58 -1.40 16 10 C -0.17 -1.24 10.01 -26.73 -0.27 -1.51 16 11 C -0.16 -1.40 10.23 -26.73 -0.27 -1.68 16 12 N -0.42 -6.97 6.95 -8.51 -0.06 -7.03 16 13 C 0.16 3.00 2.37 -67.93 -0.16 2.84 16 14 H 0.10 2.09 6.67 -51.93 -0.35 1.75 16 15 C 0.15 3.20 5.54 -4.05 -0.02 3.18 16 16 N -0.73 -19.71 5.43 -59.91 -0.33 -20.03 16 17 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 18 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 20 N -0.93 -29.61 13.06 55.49 0.72 -28.89 16 21 Si 0.91 23.22 29.55 -169.99 -5.02 18.20 16 22 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 23 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 24 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 25 C -0.16 -2.28 4.38 -90.62 -0.40 -2.68 16 26 C -0.17 -2.17 10.18 -26.70 -0.27 -2.44 16 27 C -0.17 -2.23 10.13 -26.69 -0.27 -2.50 16 28 H 0.06 1.25 8.07 -51.92 -0.42 0.83 16 29 H 0.08 1.24 5.83 -51.93 -0.30 0.93 16 30 H 0.06 0.82 7.18 -51.93 -0.37 0.45 16 31 H 0.19 2.65 8.04 -52.49 -0.42 2.23 16 32 H 0.13 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.10 0.66 7.21 -51.93 -0.37 0.29 16 34 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.02 0.45 7.84 -51.93 -0.41 0.04 16 39 H 0.39 11.39 7.07 -40.82 -0.29 11.10 16 40 H 0.25 7.79 8.31 -40.82 -0.34 7.45 16 41 H 0.11 1.42 7.96 -51.93 -0.41 1.01 16 42 H 0.10 1.29 8.05 -51.93 -0.42 0.87 16 43 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 385.72 15.07 5.81 5.81 Total: -1.00 -35.06 385.72 -10.59 -45.64 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -6.69 Total: 11.99 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -2.41 Total: -2.27 kcal Atomic # 7 Polarization: -67.01 SS G_CDS: -0.03 Total: -67.04 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.08 Total: -12.20 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -5.02 Total: 18.20 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -2.33 Total: -0.14 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.06 -10.59 -45.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725472274.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.317 kcal (2) G-P(sol) polarization free energy of solvation -35.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds