Wall clock time and date at job start Tue Mar 31 2020 18:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34783 * 119.99844 * 2 1 4 4 O 1.21633 * 120.00005 * 185.44547 * 3 2 1 5 5 C 1.47260 * 119.99964 * 5.44714 * 3 2 1 6 6 C 1.35213 * 123.14297 * 186.24311 * 5 3 2 7 7 S 1.70940 * 108.82841 * 179.97438 * 6 5 3 8 8 C 1.70771 * 91.12916 * 359.97438 * 7 6 5 9 9 C 1.50701 * 124.71875 * 180.02562 * 8 7 6 10 10 C 1.52997 * 117.49994 * 8.60101 * 9 8 7 11 11 C 1.53001 * 117.50121 * 299.97647 * 9 8 7 12 12 N 1.28648 * 110.55944 * 359.76842 * 8 7 6 13 13 C 1.46497 * 120.00175 * 180.02562 * 2 1 3 14 14 H 1.09006 * 109.47030 * 179.97438 * 13 2 1 15 15 C 1.53001 * 109.47074 * 299.99488 * 13 2 1 16 16 N 1.46490 * 109.47097 * 304.99868 * 15 13 2 17 17 C 1.36941 * 119.99702 * 179.72167 * 16 15 13 18 18 H 1.07999 * 120.00135 * 0.02562 * 17 16 15 19 19 C 1.38813 * 119.99623 * 180.02562 * 17 16 15 20 20 N 1.31621 * 120.00600 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99593 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.47507 * 90.00123 * 21 19 17 23 23 H 1.48501 * 109.47174 * 209.99891 * 21 19 17 24 24 H 1.48497 * 109.47256 * 329.99420 * 21 19 17 25 25 C 1.52996 * 109.47068 * 59.99866 * 13 2 1 26 26 C 1.53000 * 117.50099 * 128.74765 * 25 13 2 27 27 C 1.53002 * 117.50355 * 60.08822 * 25 13 2 28 28 H 1.09009 * 109.46544 * 275.34571 * 1 2 3 29 29 H 1.08999 * 109.47512 * 35.34539 * 1 2 3 30 30 H 1.08999 * 109.47134 * 155.35000 * 1 2 3 31 31 H 1.07993 * 125.58450 * 359.96041 * 6 5 3 32 32 H 1.09000 * 115.55277 * 154.31182 * 9 8 7 33 33 H 1.09001 * 117.49672 * 0.02562 * 10 9 8 34 34 H 1.08998 * 117.49853 * 145.01807 * 10 9 8 35 35 H 1.08997 * 117.50602 * 214.97920 * 11 9 8 36 36 H 1.09005 * 117.50043 * 359.97438 * 11 9 8 37 37 H 1.09004 * 109.46955 * 185.00067 * 15 13 2 38 38 H 1.09000 * 109.46831 * 65.00070 * 15 13 2 39 39 H 0.97005 * 120.00443 * 0.02562 * 16 15 13 40 40 H 0.96999 * 119.99950 * 180.02562 * 20 19 17 41 41 H 1.08998 * 115.55114 * 274.41560 * 25 13 2 42 42 H 1.09000 * 117.49997 * 359.97438 * 26 25 13 43 43 H 1.09001 * 117.49915 * 145.01877 * 26 25 13 44 44 H 1.08995 * 117.49797 * 214.98601 * 27 25 13 45 45 H 1.09004 * 117.49300 * 359.96952 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3511 1.1697 -0.1000 5 6 1.4075 2.4397 0.1211 6 6 2.0027 3.6483 0.0059 7 16 0.8207 4.8667 0.2070 8 6 -0.3993 3.6932 0.4324 9 6 -1.8518 4.0033 0.6877 10 6 -2.2980 5.4602 0.5496 11 6 -2.1909 4.8210 1.9356 12 7 0.0932 2.5077 0.3486 13 6 2.1975 -1.2687 -0.0006 14 1 3.2692 -1.0694 -0.0009 15 6 1.8280 -2.0715 1.2484 16 7 2.0709 -1.2573 2.4418 17 6 1.8057 -1.7679 3.6845 18 1 1.4179 -2.7708 3.7847 19 6 2.0353 -0.9962 4.8152 20 7 2.5075 0.2264 4.6931 21 14 1.6743 -1.6928 6.5105 22 1 2.8853 -2.3747 7.0338 23 1 1.2922 -0.5895 7.4280 24 1 0.5583 -2.6681 6.4175 25 6 1.8279 -2.0704 -1.2501 26 6 2.9740 -2.6049 -2.1112 27 6 2.1227 -1.4348 -2.6103 28 1 -0.3633 0.0958 1.0233 29 1 -0.3634 0.8382 -0.5945 30 1 -0.3633 -0.9340 -0.4286 31 1 3.0528 3.8163 -0.1822 32 1 -2.5578 3.2296 0.3860 33 1 -1.5411 6.1944 0.2737 34 1 -3.2977 5.6452 0.1567 35 1 -3.1201 4.5857 2.4545 36 1 -1.3634 5.1345 2.5722 37 1 2.4378 -2.9738 1.2939 38 1 0.7743 -2.3469 1.2047 39 1 2.4154 -0.3550 2.3515 40 1 2.6682 0.7654 5.4833 41 1 0.9324 -2.6860 -1.1659 42 1 3.9915 -2.3850 -1.7878 43 1 2.8324 -3.5720 -2.5938 44 1 1.4213 -1.6324 -3.4208 45 1 2.5796 -0.4451 -2.6148 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725472274.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:16 Heat of formation + Delta-G solvation = 70.115399 kcal Electronic energy + Delta-G solvation = -27246.785371 eV Core-core repulsion = 23586.124939 eV Total energy + Delta-G solvation = -3660.660431 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.83539 -40.27589 -38.68390 -37.89988 -36.67218 -35.66885 -33.26505 -31.59893 -30.17755 -27.75397 -27.18078 -26.03560 -24.67772 -23.32240 -23.26760 -23.03016 -21.79931 -21.07338 -20.29405 -19.37631 -19.21270 -17.71963 -17.20549 -17.11686 -16.76416 -16.62616 -16.23237 -15.69783 -15.41186 -15.26262 -14.98970 -14.91994 -14.57461 -14.49808 -14.02257 -13.62873 -13.39632 -13.24917 -13.18910 -12.85965 -12.80123 -12.69116 -12.43488 -12.39020 -12.24067 -12.12174 -11.85867 -11.85232 -11.52800 -11.42423 -11.18379 -11.04309 -10.94764 -10.61123 -10.48196 -9.87237 -9.52959 -9.04322 -7.96071 -5.26927 -0.54781 0.21301 0.54354 0.88978 1.42032 1.45601 1.53785 1.94173 2.24347 2.52505 2.71709 2.97673 3.04192 3.36575 3.44384 3.64071 3.82598 3.92384 4.00567 4.04546 4.05696 4.09436 4.15351 4.26161 4.39703 4.44819 4.45557 4.52871 4.64059 4.75484 4.76409 4.84097 4.87139 4.99390 5.01271 5.07110 5.09822 5.13625 5.20879 5.25189 5.26083 5.43668 5.60983 6.22484 6.29163 6.48779 7.06421 7.28595 8.03473 8.27954 9.27367 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.007823 B = 0.004954 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3578.375750 B = 5650.323574 C = 8028.970140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.572 5.572 3 C 0.582 3.418 4 O -0.582 6.582 5 C -0.005 4.005 6 C -0.250 4.250 7 S 0.287 5.713 8 C 0.041 3.959 9 C -0.106 4.106 10 C -0.142 4.142 11 C -0.165 4.165 12 N -0.453 5.453 13 C 0.168 3.832 14 H 0.068 0.932 15 C 0.149 3.851 16 N -0.742 5.742 17 C -0.244 4.244 18 H 0.080 0.920 19 C -0.078 4.078 20 N -0.972 5.972 21 Si 0.978 3.022 22 H -0.287 1.287 23 H -0.296 1.296 24 H -0.265 1.265 25 C -0.166 4.166 26 C -0.159 4.159 27 C -0.160 4.160 28 H 0.032 0.968 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.188 0.812 32 H 0.138 0.862 33 H 0.105 0.895 34 H 0.135 0.865 35 H 0.121 0.879 36 H 0.089 0.911 37 H 0.035 0.965 38 H 0.034 0.966 39 H 0.368 0.632 40 H 0.248 0.752 41 H 0.127 0.873 42 H 0.081 0.919 43 H 0.124 0.876 44 H 0.119 0.881 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.549 9.492 -16.115 21.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.300 5.300 3 C 0.369 3.631 4 O -0.463 6.463 5 C -0.140 4.140 6 C -0.392 4.392 7 S 0.546 5.454 8 C -0.237 4.237 9 C -0.128 4.128 10 C -0.179 4.179 11 C -0.204 4.204 12 N -0.169 5.169 13 C 0.064 3.936 14 H 0.086 0.914 15 C 0.021 3.979 16 N -0.384 5.384 17 C -0.375 4.375 18 H 0.098 0.902 19 C -0.270 4.270 20 N -0.622 5.622 21 Si 0.807 3.193 22 H -0.214 1.214 23 H -0.222 1.222 24 H -0.189 1.189 25 C -0.185 4.185 26 C -0.197 4.197 27 C -0.198 4.198 28 H 0.051 0.949 29 H 0.111 0.889 30 H 0.099 0.901 31 H 0.205 0.795 32 H 0.156 0.844 33 H 0.123 0.877 34 H 0.154 0.846 35 H 0.139 0.861 36 H 0.108 0.892 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.200 0.800 40 H 0.057 0.943 41 H 0.145 0.855 42 H 0.100 0.900 43 H 0.142 0.858 44 H 0.137 0.863 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.320 9.915 -16.017 21.977 hybrid contribution 1.125 -0.998 1.362 2.029 sum -10.195 8.917 -14.655 19.955 Atomic orbital electron populations 1.21864 0.77267 1.03130 1.01431 1.47518 1.08341 1.04370 1.69793 1.17542 0.85955 0.83554 0.76096 1.90727 1.14638 1.87476 1.53468 1.20237 0.89963 0.94629 1.09140 1.26838 1.07997 0.96969 1.07420 1.82054 0.94477 1.07971 1.60899 1.26944 1.01967 0.91593 1.03244 1.20549 0.87343 0.98176 1.06720 1.23297 1.04776 0.91259 0.98603 1.23252 1.04325 1.01799 0.91041 1.67164 1.09489 1.24765 1.15491 1.20816 0.96042 0.82545 0.94187 0.91422 1.21109 0.98256 0.93267 0.85221 1.42498 1.78664 1.15599 1.01640 1.19665 1.34783 0.98361 0.84728 0.90226 1.25649 1.02742 0.96681 1.01889 1.69902 1.52989 1.10475 1.28877 0.85073 0.77983 0.76939 0.79342 1.21424 1.22238 1.18947 1.22441 1.02211 1.03635 0.90255 1.23070 0.95079 0.99266 1.02261 1.22818 1.03625 0.96909 0.96399 0.94885 0.88927 0.90086 0.79491 0.84433 0.87703 0.84647 0.86076 0.89245 0.94758 0.94772 0.80033 0.94294 0.85471 0.90019 0.85758 0.86263 0.91429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.58 8.32 127.77 1.06 4.64 16 2 N -0.57 -22.40 2.12 -826.63 -1.76 -24.16 16 3 C 0.58 25.33 7.34 86.61 0.64 25.96 16 4 O -0.58 -28.67 16.07 -4.14 -0.07 -28.74 16 5 C 0.00 -0.19 6.43 40.56 0.26 0.08 16 6 C -0.25 -7.87 10.62 67.12 0.71 -7.15 16 7 S 0.29 6.25 21.65 -56.49 -1.22 5.03 16 8 C 0.04 1.06 6.99 88.57 0.62 1.68 16 9 C -0.11 -1.99 6.33 -11.54 -0.07 -2.06 16 10 C -0.14 -1.59 10.01 30.59 0.31 -1.28 16 11 C -0.17 -2.62 10.23 30.60 0.31 -2.31 16 12 N -0.45 -15.32 6.95 -180.83 -1.26 -16.58 16 13 C 0.17 6.44 2.37 44.99 0.11 6.55 16 14 H 0.07 3.04 6.67 -2.38 -0.02 3.02 16 15 C 0.15 6.50 5.54 86.38 0.48 6.98 16 16 N -0.74 -41.62 5.43 -343.46 -1.87 -43.48 16 17 C -0.24 -14.49 9.99 84.03 0.84 -13.65 16 18 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 19 C -0.08 -4.74 5.50 84.86 0.47 -4.28 16 20 N -0.97 -64.05 13.06 21.65 0.28 -63.77 16 21 Si 0.98 48.39 29.55 68.60 2.03 50.42 16 22 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 23 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 24 H -0.26 -12.20 7.11 99.48 0.71 -11.50 16 25 C -0.17 -4.63 4.38 -10.79 -0.05 -4.68 16 26 C -0.16 -3.84 10.18 30.62 0.31 -3.53 16 27 C -0.16 -3.98 10.13 30.62 0.31 -3.67 16 28 H 0.03 1.32 8.07 -2.38 -0.02 1.30 16 29 H 0.09 2.91 5.83 -2.39 -0.01 2.90 16 30 H 0.08 2.28 7.18 -2.39 -0.02 2.26 16 31 H 0.19 5.65 8.04 -2.91 -0.02 5.63 16 32 H 0.14 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.10 1.03 7.21 -2.39 -0.02 1.01 16 34 H 0.14 0.86 8.14 -2.39 -0.02 0.85 16 35 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 37 H 0.03 1.48 8.14 -2.38 -0.02 1.46 16 38 H 0.03 1.42 7.84 -2.39 -0.02 1.40 16 39 H 0.37 22.98 7.07 -92.70 -0.65 22.33 16 40 H 0.25 15.82 8.31 -92.71 -0.77 15.05 16 41 H 0.13 3.06 7.96 -2.39 -0.02 3.04 16 42 H 0.08 2.21 8.05 -2.39 -0.02 2.19 16 43 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 Total: -1.00 -80.49 385.72 2.80 -77.69 By element: Atomic # 1 Polarization: 39.96 SS G_CDS: 0.35 Total: 40.31 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 6.31 Total: 3.28 kcal Atomic # 7 Polarization: -143.39 SS G_CDS: -4.60 Total: -147.99 kcal Atomic # 8 Polarization: -28.67 SS G_CDS: -0.07 Total: -28.74 kcal Atomic # 14 Polarization: 48.39 SS G_CDS: 2.03 Total: 50.42 kcal Atomic # 16 Polarization: 6.25 SS G_CDS: -1.22 Total: 5.03 kcal Total: -80.49 2.80 -77.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725472274.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.802 kcal (2) G-P(sol) polarization free energy of solvation -80.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds