Wall clock time and date at job start Tue Mar 31 2020 18:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34779 * 119.99691 * 2 1 4 4 O 1.21281 * 119.99649 * 179.97438 * 3 2 1 5 5 C 1.50694 * 120.00418 * 0.02562 * 3 2 1 6 6 S 1.80998 * 109.47483 * 180.02562 * 5 3 2 7 7 C 1.76195 * 100.00239 * 179.97438 * 6 5 3 8 8 H 1.08007 * 119.99974 * 359.97438 * 7 6 5 9 9 C 1.38799 * 120.00140 * 179.97438 * 7 6 5 10 10 N 1.31635 * 119.99793 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00163 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47091 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.46744 * 120.00243 * 11 9 7 14 14 H 1.48503 * 109.47394 * 240.00493 * 11 9 7 15 15 C 1.46493 * 119.99873 * 179.97438 * 2 1 3 16 16 H 1.09004 * 110.87464 * 182.38528 * 15 2 1 17 17 C 1.55143 * 110.99091 * 58.54969 * 15 2 1 18 18 C 1.54316 * 103.01778 * 206.25288 * 17 15 2 19 19 N 1.47446 * 107.23596 * 22.28194 * 18 17 15 20 20 C 1.46894 * 111.00399 * 123.25690 * 19 18 17 21 21 C 1.50702 * 109.47028 * 69.87358 * 20 19 18 22 22 C 1.38677 * 120.41881 * 90.00198 * 21 20 19 23 23 C 1.38628 * 118.41857 * 179.97438 * 22 21 20 24 24 C 1.38215 * 119.16579 * 0.02562 * 23 22 21 25 25 N 1.31854 * 120.76332 * 359.97438 * 24 23 22 26 26 C 1.31888 * 121.72838 * 0.02562 * 25 24 23 27 27 C 1.47850 * 108.56377 * 0.98797 * 19 18 17 28 28 H 1.09003 * 109.46800 * 269.99757 * 1 2 3 29 29 H 1.09000 * 109.47252 * 29.99447 * 1 2 3 30 30 H 1.09000 * 109.47256 * 150.00378 * 1 2 3 31 31 H 1.09005 * 109.47376 * 299.99943 * 5 3 2 32 32 H 1.09006 * 109.47230 * 59.99758 * 5 3 2 33 33 H 0.97006 * 119.99562 * 179.97438 * 10 9 7 34 34 H 1.08995 * 110.70991 * 87.87125 * 17 15 2 35 35 H 1.08997 * 110.70527 * 324.62984 * 17 15 2 36 36 H 1.09003 * 109.89338 * 262.87364 * 18 17 15 37 37 H 1.09005 * 110.02484 * 141.76405 * 18 17 15 38 38 H 1.09008 * 109.47416 * 309.87905 * 20 19 18 39 39 H 1.08994 * 109.47440 * 189.87323 * 20 19 18 40 40 H 1.08003 * 120.78604 * 359.96123 * 22 21 20 41 41 H 1.08004 * 120.41395 * 180.02562 * 23 22 21 42 42 H 1.07994 * 119.62230 * 179.97438 * 24 23 22 43 43 H 1.07999 * 119.61890 * 179.97438 * 26 25 24 44 44 H 1.09002 * 110.36916 * 94.73765 * 27 19 18 45 45 H 1.09004 * 110.36811 * 217.07566 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 0.0006 6 16 2.5615 3.8481 -0.0003 7 6 1.4415 5.2082 -0.0002 8 1 0.3761 5.0305 -0.0001 9 6 1.9282 6.5081 -0.0003 10 7 3.2266 6.7247 -0.0009 11 14 0.7407 7.9501 -0.0009 12 1 -0.6547 7.4422 -0.0007 13 1 0.9661 8.7774 1.2116 14 1 0.9667 8.7770 -1.2135 15 6 2.1975 -1.2687 0.0006 16 1 3.2729 -1.0963 0.0429 17 6 1.8208 -2.1284 -1.2347 18 6 2.0928 -3.5686 -0.7519 19 7 2.0453 -3.5517 0.7217 20 6 1.0504 -4.5067 1.2275 21 6 1.5342 -5.9129 0.9827 22 6 2.3009 -6.5674 1.9350 23 6 2.7233 -7.8603 1.6670 24 6 2.3692 -8.4497 0.4681 25 7 1.6387 -7.7971 -0.4145 26 6 1.2193 -6.5663 -0.1935 27 6 1.7339 -2.1766 1.1668 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3634 -0.8900 -0.5138 31 1 0.7584 2.5303 -0.8892 32 1 0.7590 2.5299 0.8908 33 1 3.5667 7.6332 -0.0013 34 1 2.4561 -1.8806 -2.0850 35 1 0.7686 -1.9991 -1.4879 36 1 3.0780 -3.8925 -1.0874 37 1 1.3291 -4.2428 -1.1398 38 1 0.1033 -4.3532 0.7100 39 1 0.9092 -4.3521 2.2971 40 1 2.5629 -6.0812 2.8631 41 1 3.3216 -8.4001 2.3862 42 1 2.6946 -9.4564 0.2516 43 1 0.6229 -6.0634 -0.9403 44 1 0.6622 -2.0648 1.3319 45 1 2.2857 -1.9380 2.0760 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732155305.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:06 Heat of formation + Delta-G solvation = 16.536615 kcal Electronic energy + Delta-G solvation = -25542.584786 eV Core-core repulsion = 21879.601004 eV Total energy + Delta-G solvation = -3662.983782 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.76173 -39.99554 -38.44055 -35.41671 -33.57397 -32.44684 -32.31685 -30.69836 -29.68393 -28.14201 -26.88823 -25.92431 -25.46078 -23.96599 -22.60706 -21.45502 -20.92371 -19.13303 -17.77577 -17.43540 -17.14758 -16.74341 -16.46444 -15.83611 -15.46583 -15.36502 -15.02986 -14.82127 -14.11696 -14.07075 -13.87173 -13.79446 -13.44562 -13.36035 -13.24800 -13.04200 -12.89420 -12.57207 -12.33626 -12.14544 -12.04795 -11.80290 -11.55157 -11.43367 -11.08741 -11.03972 -10.85471 -10.76737 -10.16631 -9.82383 -9.80668 -9.46981 -9.38105 -9.09220 -8.72210 -8.56395 -8.24449 -6.52296 -6.23608 -3.94341 0.70050 0.92623 2.79953 2.98086 3.20001 3.22244 3.28880 3.36245 3.54957 3.86067 4.02146 4.18152 4.28381 4.33613 4.41249 4.55189 4.60521 4.65222 4.81052 4.87162 4.92283 4.97618 5.03479 5.10002 5.11610 5.17153 5.23538 5.32243 5.33629 5.42014 5.51629 5.57436 5.65692 5.71022 5.73707 5.83574 5.88636 5.91632 6.01793 6.09658 6.30148 6.44681 6.62005 6.68315 7.46362 7.57949 7.59293 8.33350 8.49977 9.21808 10.83840 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.041727 B = 0.001831 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.869036 B =15290.726880 C =15419.420685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.616 5.616 3 C 0.535 3.465 4 O -0.513 6.513 5 C -0.150 4.150 6 S -0.061 6.061 7 C -0.535 4.535 8 H 0.073 0.927 9 C 0.073 3.927 10 N -0.867 5.867 11 Si 0.919 3.081 12 H -0.272 1.272 13 H -0.280 1.280 14 H -0.280 1.280 15 C 0.136 3.864 16 H 0.117 0.883 17 C -0.155 4.155 18 C 0.043 3.957 19 N -0.521 5.521 20 C 0.093 3.907 21 C -0.126 4.126 22 C -0.055 4.055 23 C -0.173 4.173 24 C 0.094 3.906 25 N -0.486 5.486 26 C 0.104 3.896 27 C 0.034 3.966 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.268 0.732 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.058 0.942 38 H 0.049 0.951 39 H 0.086 0.914 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.154 0.846 43 H 0.150 0.850 44 H 0.054 0.946 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.308 -28.162 2.450 29.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.352 5.352 3 C 0.323 3.677 4 O -0.387 6.387 5 C -0.300 4.300 6 S 0.165 5.835 7 C -0.683 4.683 8 H 0.091 0.909 9 C -0.136 4.136 10 N -0.502 5.502 11 Si 0.745 3.255 12 H -0.196 1.196 13 H -0.206 1.206 14 H -0.206 1.206 15 C 0.031 3.969 16 H 0.135 0.865 17 C -0.194 4.194 18 C -0.085 4.085 19 N -0.245 5.245 20 C -0.036 4.036 21 C -0.129 4.129 22 C -0.081 4.081 23 C -0.193 4.193 24 C -0.063 4.063 25 N -0.194 5.194 26 C -0.054 4.054 27 C -0.095 4.095 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.105 0.895 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.171 0.829 43 H 0.167 0.833 44 H 0.072 0.928 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.111 -28.574 1.866 29.087 hybrid contribution -2.801 1.517 0.507 3.225 sum -7.911 -27.057 2.373 28.290 Atomic orbital electron populations 1.21754 0.79937 1.03127 1.01758 1.47738 1.06607 1.05163 1.75646 1.20379 0.87956 0.84488 0.74845 1.90699 1.13736 1.86676 1.47564 1.23557 1.04566 0.97139 1.04743 1.85420 1.08012 0.93333 1.96698 1.22897 0.94326 0.92196 1.58911 0.90891 1.24997 0.95678 0.98391 0.94531 1.70033 1.11727 1.21578 1.46876 0.86116 0.80324 0.81123 0.77922 1.19630 1.20554 1.20552 1.22067 0.99053 0.82539 0.93220 0.86499 1.23164 1.02392 0.94726 0.99131 1.22861 1.02266 0.96126 0.87235 1.63606 1.46403 1.05154 1.09369 1.21132 0.92823 0.88219 1.01379 1.20745 0.99608 0.96731 0.95783 1.21501 0.93678 0.93879 0.99065 1.22174 1.01799 0.96236 0.99057 1.22773 0.93824 0.99783 0.89901 1.67694 1.10451 1.08777 1.32497 1.22679 0.97016 0.90663 0.95032 1.23360 0.99985 0.86953 0.99156 0.92677 0.90380 0.91511 0.89229 0.89216 0.92219 0.89968 0.90873 0.90153 0.92329 0.93249 0.89531 0.84679 0.84738 0.82857 0.83253 0.92804 0.89374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 8.92 59.85 0.53 1.29 16 2 N -0.62 -8.32 2.91 -171.50 -0.50 -8.82 16 3 C 0.54 9.96 7.69 -10.99 -0.08 9.88 16 4 O -0.51 -11.58 15.24 5.56 0.08 -11.50 16 5 C -0.15 -2.98 4.71 36.00 0.17 -2.81 16 6 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 7 C -0.54 -15.12 9.50 30.94 0.29 -14.82 16 8 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 9 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 10 N -0.87 -26.02 13.22 55.49 0.73 -25.29 16 11 Si 0.92 21.25 29.55 -169.99 -5.02 16.22 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 14 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 15 C 0.14 1.63 3.45 -65.80 -0.23 1.40 16 16 H 0.12 1.73 7.01 -51.93 -0.36 1.36 16 17 C -0.15 -1.48 6.50 -24.91 -0.16 -1.64 16 18 C 0.04 0.37 6.27 -2.84 -0.02 0.35 16 19 N -0.52 -4.60 5.15 -232.69 -1.20 -5.80 16 20 C 0.09 0.65 4.77 -4.98 -0.02 0.63 16 21 C -0.13 -0.96 5.12 -104.48 -0.53 -1.50 16 22 C -0.05 -0.39 9.86 -39.28 -0.39 -0.77 16 23 C -0.17 -1.12 10.11 -39.45 -0.40 -1.52 16 24 C 0.09 0.71 11.18 -17.55 -0.20 0.51 16 25 N -0.49 -4.61 10.36 -13.26 -0.14 -4.75 16 26 C 0.10 0.86 9.92 -17.55 -0.17 0.69 16 27 C 0.03 0.33 6.25 -2.30 -0.01 0.31 16 28 H 0.05 0.48 8.09 -51.93 -0.42 0.06 16 29 H 0.08 0.79 6.44 -51.93 -0.33 0.45 16 30 H 0.07 0.51 6.32 -51.93 -0.33 0.18 16 31 H 0.09 1.65 7.40 -51.91 -0.38 1.26 16 32 H 0.09 1.66 8.11 -51.91 -0.42 1.24 16 33 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.62 6.30 -51.93 -0.33 0.30 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.42 5.52 -51.93 -0.29 0.13 16 38 H 0.05 0.31 7.92 -51.92 -0.41 -0.10 16 39 H 0.09 0.54 8.03 -51.93 -0.42 0.13 16 40 H 0.14 0.77 8.06 -52.48 -0.42 0.34 16 41 H 0.13 0.54 8.06 -52.48 -0.42 0.12 16 42 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 43 H 0.15 1.01 6.92 -52.49 -0.36 0.65 16 44 H 0.05 0.45 6.72 -51.93 -0.35 0.11 16 45 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 377.55 15.07 5.69 5.69 Total: -1.00 -34.92 377.55 -10.37 -45.28 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -6.49 Total: -1.15 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -1.32 Total: -6.03 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: -1.10 Total: -44.66 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.08 Total: -11.50 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.92 -10.37 -45.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732155305.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.820 kcal (2) G-P(sol) polarization free energy of solvation -34.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds