Wall clock time and date at job start Tue Mar 31 2020 18:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34779 * 119.99691 * 2 1 4 4 O 1.21281 * 119.99649 * 179.97438 * 3 2 1 5 5 C 1.50694 * 120.00418 * 0.02562 * 3 2 1 6 6 S 1.80998 * 109.47483 * 180.02562 * 5 3 2 7 7 C 1.76195 * 100.00239 * 179.97438 * 6 5 3 8 8 H 1.08007 * 119.99974 * 359.97438 * 7 6 5 9 9 C 1.38799 * 120.00140 * 179.97438 * 7 6 5 10 10 N 1.31635 * 119.99793 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00163 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47091 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.46744 * 120.00243 * 11 9 7 14 14 H 1.48503 * 109.47394 * 240.00493 * 11 9 7 15 15 C 1.46493 * 119.99873 * 179.97438 * 2 1 3 16 16 H 1.09004 * 110.87464 * 182.38528 * 15 2 1 17 17 C 1.55143 * 110.99091 * 58.54969 * 15 2 1 18 18 C 1.54316 * 103.01778 * 206.25288 * 17 15 2 19 19 N 1.47446 * 107.23596 * 22.28194 * 18 17 15 20 20 C 1.46894 * 111.00399 * 123.25690 * 19 18 17 21 21 C 1.50702 * 109.47028 * 69.87358 * 20 19 18 22 22 C 1.38677 * 120.41881 * 90.00198 * 21 20 19 23 23 C 1.38628 * 118.41857 * 179.97438 * 22 21 20 24 24 C 1.38215 * 119.16579 * 0.02562 * 23 22 21 25 25 N 1.31854 * 120.76332 * 359.97438 * 24 23 22 26 26 C 1.31888 * 121.72838 * 0.02562 * 25 24 23 27 27 C 1.47850 * 108.56377 * 0.98797 * 19 18 17 28 28 H 1.09003 * 109.46800 * 269.99757 * 1 2 3 29 29 H 1.09000 * 109.47252 * 29.99447 * 1 2 3 30 30 H 1.09000 * 109.47256 * 150.00378 * 1 2 3 31 31 H 1.09005 * 109.47376 * 299.99943 * 5 3 2 32 32 H 1.09006 * 109.47230 * 59.99758 * 5 3 2 33 33 H 0.97006 * 119.99562 * 179.97438 * 10 9 7 34 34 H 1.08995 * 110.70991 * 87.87125 * 17 15 2 35 35 H 1.08997 * 110.70527 * 324.62984 * 17 15 2 36 36 H 1.09003 * 109.89338 * 262.87364 * 18 17 15 37 37 H 1.09005 * 110.02484 * 141.76405 * 18 17 15 38 38 H 1.09008 * 109.47416 * 309.87905 * 20 19 18 39 39 H 1.08994 * 109.47440 * 189.87323 * 20 19 18 40 40 H 1.08003 * 120.78604 * 359.96123 * 22 21 20 41 41 H 1.08004 * 120.41395 * 180.02562 * 23 22 21 42 42 H 1.07994 * 119.62230 * 179.97438 * 24 23 22 43 43 H 1.07999 * 119.61890 * 179.97438 * 26 25 24 44 44 H 1.09002 * 110.36916 * 94.73765 * 27 19 18 45 45 H 1.09004 * 110.36811 * 217.07566 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 0.0006 6 16 2.5615 3.8481 -0.0003 7 6 1.4415 5.2082 -0.0002 8 1 0.3761 5.0305 -0.0001 9 6 1.9282 6.5081 -0.0003 10 7 3.2266 6.7247 -0.0009 11 14 0.7407 7.9501 -0.0009 12 1 -0.6547 7.4422 -0.0007 13 1 0.9661 8.7774 1.2116 14 1 0.9667 8.7770 -1.2135 15 6 2.1975 -1.2687 0.0006 16 1 3.2729 -1.0963 0.0429 17 6 1.8208 -2.1284 -1.2347 18 6 2.0928 -3.5686 -0.7519 19 7 2.0453 -3.5517 0.7217 20 6 1.0504 -4.5067 1.2275 21 6 1.5342 -5.9129 0.9827 22 6 2.3009 -6.5674 1.9350 23 6 2.7233 -7.8603 1.6670 24 6 2.3692 -8.4497 0.4681 25 7 1.6387 -7.7971 -0.4145 26 6 1.2193 -6.5663 -0.1935 27 6 1.7339 -2.1766 1.1668 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3634 -0.8900 -0.5138 31 1 0.7584 2.5303 -0.8892 32 1 0.7590 2.5299 0.8908 33 1 3.5667 7.6332 -0.0013 34 1 2.4561 -1.8806 -2.0850 35 1 0.7686 -1.9991 -1.4879 36 1 3.0780 -3.8925 -1.0874 37 1 1.3291 -4.2428 -1.1398 38 1 0.1033 -4.3532 0.7100 39 1 0.9092 -4.3521 2.2971 40 1 2.5629 -6.0812 2.8631 41 1 3.3216 -8.4001 2.3862 42 1 2.6946 -9.4564 0.2516 43 1 0.6229 -6.0634 -0.9403 44 1 0.6622 -2.0648 1.3319 45 1 2.2857 -1.9380 2.0760 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732155305.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:05 Heat of formation + Delta-G solvation = -7.469148 kcal Electronic energy + Delta-G solvation = -25543.625754 eV Core-core repulsion = 21879.601004 eV Total energy + Delta-G solvation = -3664.024750 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.47764 -40.95468 -39.47044 -36.51813 -34.58659 -34.30146 -32.89618 -31.58693 -30.75010 -29.17733 -27.81032 -27.64531 -26.57191 -24.50916 -23.19309 -22.53022 -21.60296 -20.37985 -19.59802 -18.40215 -17.93609 -17.47076 -17.38655 -16.88465 -16.71934 -16.55310 -16.28674 -16.13738 -15.51874 -14.70494 -14.66722 -14.59569 -14.52550 -14.38176 -14.19735 -14.02678 -13.88843 -13.59156 -13.46122 -13.20711 -13.13174 -12.92048 -12.77819 -12.62949 -12.50114 -12.45415 -12.08314 -11.71955 -11.64678 -11.16062 -10.93250 -10.71290 -10.36753 -10.26286 -9.96709 -9.70617 -9.34200 -8.67810 -8.34931 -6.13342 0.17162 0.39251 1.24601 1.41518 1.45258 1.53712 1.56850 2.02005 2.26980 2.78185 2.99419 3.17206 3.26278 3.47434 3.54422 3.64987 3.78967 3.87681 3.91418 4.04716 4.11684 4.14290 4.16943 4.21553 4.25840 4.33826 4.45447 4.48859 4.58303 4.62332 4.65581 4.74873 4.78704 4.89603 4.90183 4.93696 5.05610 5.15288 5.23322 5.38165 5.41878 5.50491 5.79775 5.88945 6.00501 6.19591 6.23808 7.05206 7.06434 7.11616 8.74548 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.041727 B = 0.001831 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.869036 B =15290.726880 C =15419.420685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.600 5.600 3 C 0.532 3.468 4 O -0.566 6.566 5 C -0.122 4.122 6 S -0.155 6.155 7 C -0.544 4.544 8 H 0.084 0.916 9 C 0.013 3.987 10 N -0.912 5.912 11 Si 1.000 3.000 12 H -0.255 1.255 13 H -0.274 1.274 14 H -0.275 1.275 15 C 0.128 3.872 16 H 0.079 0.921 17 C -0.145 4.145 18 C 0.049 3.951 19 N -0.532 5.532 20 C 0.096 3.904 21 C -0.132 4.132 22 C -0.065 4.065 23 C -0.172 4.172 24 C 0.081 3.919 25 N -0.516 5.516 26 C 0.091 3.909 27 C 0.047 3.953 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.271 0.729 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.096 0.904 40 H 0.148 0.852 41 H 0.159 0.841 42 H 0.173 0.827 43 H 0.161 0.839 44 H 0.076 0.924 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.442 -29.423 2.885 31.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.333 5.333 3 C 0.320 3.680 4 O -0.444 6.444 5 C -0.273 4.273 6 S 0.072 5.928 7 C -0.692 4.692 8 H 0.102 0.898 9 C -0.192 4.192 10 N -0.548 5.548 11 Si 0.821 3.179 12 H -0.179 1.179 13 H -0.200 1.200 14 H -0.200 1.200 15 C 0.023 3.977 16 H 0.098 0.902 17 C -0.184 4.184 18 C -0.078 4.078 19 N -0.256 5.256 20 C -0.032 4.032 21 C -0.134 4.134 22 C -0.092 4.092 23 C -0.192 4.192 24 C -0.076 4.076 25 N -0.225 5.225 26 C -0.066 4.066 27 C -0.082 4.082 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.116 0.884 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.112 0.888 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.114 0.886 40 H 0.165 0.835 41 H 0.176 0.824 42 H 0.190 0.810 43 H 0.178 0.822 44 H 0.094 0.906 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.295 -29.891 2.302 31.106 hybrid contribution -1.828 1.714 0.387 2.536 sum -10.123 -28.177 2.690 30.061 Atomic orbital electron populations 1.22111 0.76992 1.04806 1.03578 1.47682 1.08299 1.04044 1.73314 1.20189 0.87265 0.85499 0.75032 1.90684 1.15841 1.87416 1.50497 1.23367 1.02653 0.94742 1.06503 1.85632 1.12747 0.97404 1.97030 1.23229 0.94643 0.92572 1.58753 0.89789 1.26143 0.97590 1.01730 0.93748 1.70201 1.14140 1.22406 1.48078 0.84896 0.78222 0.76724 0.78040 1.17871 1.19975 1.19996 1.22131 0.97142 0.82345 0.96060 0.90241 1.23107 1.03255 0.94632 0.97438 1.22787 1.02256 0.95597 0.87190 1.63537 1.47689 1.04935 1.09468 1.21172 0.92772 0.87196 1.02065 1.20828 0.99801 0.97033 0.95745 1.21797 0.93510 0.94308 0.99559 1.22455 1.01427 0.96166 0.99112 1.23182 0.93590 1.00673 0.90106 1.67687 1.11574 1.09606 1.33637 1.22896 0.97384 0.90640 0.95651 1.23190 1.00907 0.86717 0.97370 0.90726 0.90306 0.88353 0.87276 0.87285 0.92019 0.91154 0.88809 0.91511 0.90367 0.91692 0.88599 0.83458 0.82384 0.81023 0.82228 0.90598 0.90567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.06 8.92 127.77 1.14 2.20 16 2 N -0.60 -15.35 2.91 -814.88 -2.37 -17.72 16 3 C 0.53 19.92 7.69 87.65 0.67 20.59 16 4 O -0.57 -26.80 15.24 -3.03 -0.05 -26.84 16 5 C -0.12 -4.79 4.71 71.23 0.34 -4.46 16 6 S -0.16 -8.65 20.57 -56.49 -1.16 -9.81 16 7 C -0.54 -30.89 9.50 67.95 0.65 -30.24 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 9 C 0.01 0.71 5.49 84.86 0.47 1.18 16 10 N -0.91 -56.03 13.22 21.65 0.29 -55.75 16 11 Si 1.00 43.29 29.55 68.60 2.03 45.31 16 12 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 13 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 14 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 15 C 0.13 2.96 3.45 46.38 0.16 3.12 16 16 H 0.08 2.48 7.01 -2.38 -0.02 2.46 16 17 C -0.15 -2.52 6.50 31.78 0.21 -2.32 16 18 C 0.05 0.76 6.27 86.64 0.54 1.30 16 19 N -0.53 -8.34 5.15 -890.08 -4.58 -12.93 16 20 C 0.10 1.07 4.77 85.56 0.41 1.48 16 21 C -0.13 -1.75 5.12 -19.77 -0.10 -1.85 16 22 C -0.07 -0.81 9.86 22.47 0.22 -0.59 16 23 C -0.17 -1.92 10.11 22.36 0.23 -1.69 16 24 C 0.08 1.11 11.18 84.68 0.95 2.06 16 25 N -0.52 -9.27 10.36 -195.85 -2.03 -11.30 16 26 C 0.09 1.37 9.92 84.67 0.84 2.21 16 27 C 0.05 0.81 6.25 86.77 0.54 1.35 16 28 H 0.07 0.98 8.09 -2.39 -0.02 0.96 16 29 H 0.08 1.30 6.44 -2.39 -0.02 1.29 16 30 H 0.10 1.00 6.32 -2.39 -0.02 0.99 16 31 H 0.11 3.86 7.40 -2.39 -0.02 3.84 16 32 H 0.11 3.86 8.11 -2.39 -0.02 3.84 16 33 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 34 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.09 1.25 6.30 -2.39 -0.02 1.24 16 36 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.08 0.91 5.52 -2.38 -0.01 0.89 16 38 H 0.06 0.55 7.92 -2.38 -0.02 0.53 16 39 H 0.10 0.91 8.03 -2.39 -0.02 0.89 16 40 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 41 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 42 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16 43 H 0.16 1.85 6.92 -2.91 -0.02 1.83 16 44 H 0.08 0.99 6.72 -2.39 -0.02 0.97 16 45 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -79.80 377.55 0.37 -79.43 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.99 Total: 15.24 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: 7.25 Total: -5.65 kcal Atomic # 7 Polarization: -88.99 SS G_CDS: -8.69 Total: -97.68 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.05 Total: -26.84 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.16 Total: -9.81 kcal Total: -79.80 0.37 -79.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732155305.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.958 kcal (2) G-P(sol) polarization free energy of solvation -79.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds