Wall clock time and date at job start Tue Mar 31 2020 18:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53007 * 109.46751 * 243.46749 * 3 2 1 5 5 N 1.46904 * 109.46956 * 179.56163 * 4 3 2 6 6 C 1.46901 * 111.00291 * 298.11434 * 5 4 3 7 7 C 1.50701 * 109.46836 * 292.89950 * 6 5 4 8 8 H 1.08004 * 120.00216 * 354.95801 * 7 6 5 9 9 C 1.37876 * 120.00055 * 174.95260 * 7 6 5 10 10 N 1.31516 * 119.99853 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00060 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.46817 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47227 * 120.00098 * 11 9 7 14 14 H 1.48506 * 109.46799 * 240.00398 * 11 9 7 15 15 C 1.46905 * 110.99932 * 62.06506 * 5 4 3 16 16 N 1.46498 * 109.47070 * 66.04569 * 15 5 4 17 17 N 1.40163 * 126.35378 * 270.19661 * 16 15 5 18 18 C 1.29376 * 108.16892 * 180.35912 * 17 16 15 19 19 N 1.37499 * 108.81080 * 0.07299 * 18 17 16 20 20 C 1.34806 * 108.28064 * 359.35131 * 19 18 17 21 21 S 1.71197 * 126.28002 * 181.00417 * 20 19 18 22 22 C 1.46724 * 125.94302 * 178.87755 * 19 18 17 23 23 C 1.52977 * 109.52882 * 27.93185 * 22 19 18 24 24 C 1.52717 * 109.80038 * 270.50600 * 23 22 19 25 25 C 1.52488 * 110.55239 * 61.77903 * 24 23 22 26 26 C 1.50915 * 125.96808 * 180.34714 * 18 17 16 27 27 H 1.08999 * 109.47156 * 123.46786 * 3 2 1 28 28 H 1.08995 * 109.47573 * 3.46291 * 3 2 1 29 29 H 1.08998 * 109.47348 * 59.56306 * 4 3 2 30 30 H 1.08992 * 109.47075 * 299.55938 * 4 3 2 31 31 H 1.08999 * 109.46790 * 52.89956 * 6 5 4 32 32 H 1.08994 * 109.47358 * 172.90105 * 6 5 4 33 33 H 0.96998 * 119.99543 * 179.97438 * 10 9 7 34 34 H 1.09006 * 109.47038 * 306.04863 * 15 5 4 35 35 H 1.08997 * 109.47490 * 186.04491 * 15 5 4 36 36 H 1.08997 * 109.46668 * 267.91677 * 22 19 18 37 37 H 1.09000 * 109.45459 * 147.94025 * 22 19 18 38 38 H 1.08995 * 109.41817 * 150.40026 * 23 22 19 39 39 H 1.09008 * 109.36199 * 30.57004 * 23 22 19 40 40 H 1.09001 * 109.25913 * 301.50765 * 24 23 22 41 41 H 1.09001 * 109.23756 * 182.03948 * 24 23 22 42 42 H 1.09000 * 109.46590 * 273.49786 * 25 24 23 43 43 H 1.08999 * 109.46073 * 153.53523 * 25 24 23 44 44 H 1.08996 * 109.51266 * 346.61036 * 26 18 17 45 45 H 1.08997 * 109.51270 * 106.72130 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.6453 1.2907 5 7 4.5866 0.6365 1.2955 6 6 5.1050 -0.7376 1.2628 7 6 4.7605 -1.4352 2.5534 8 1 4.2838 -0.8874 3.3529 9 6 5.0538 -2.7728 2.7137 10 7 5.6347 -3.4398 1.7404 11 14 4.6261 -3.6377 4.3132 12 1 3.9844 -2.6725 5.2415 13 1 3.6896 -4.7563 4.0361 14 1 5.8651 -4.1716 4.9339 15 6 5.1214 1.4275 0.1791 16 7 4.7807 2.8390 0.3734 17 7 3.6235 3.4848 -0.0830 18 6 3.6860 4.7262 0.2761 19 7 4.8598 4.9306 0.9624 20 6 5.5209 3.7577 1.0281 21 16 7.0236 3.4838 1.8014 22 6 5.3210 6.2076 1.5186 23 6 4.1136 7.0834 1.8581 24 6 3.7339 7.9330 0.6472 25 6 3.3347 7.0445 -0.5261 26 6 2.6447 5.7827 -0.0014 27 1 2.9711 0.5675 -0.8573 28 1 2.9718 -1.0249 -0.0621 29 1 2.7481 0.0830 2.1482 30 1 2.7603 1.6733 1.3490 31 1 4.6560 -1.2755 0.4279 32 1 6.1878 -0.7146 1.1400 33 1 5.8414 -4.3808 1.8533 34 1 4.6880 1.0746 -0.7568 35 1 6.2052 1.3172 0.1419 36 1 5.9456 6.7185 0.7859 37 1 5.9003 6.0216 2.4230 38 1 4.3630 7.7360 2.6947 39 1 3.2718 6.4476 2.1329 40 1 4.5859 8.5485 0.3584 41 1 2.8964 8.5791 0.9101 42 1 4.2251 6.7641 -1.0888 43 1 2.6503 7.5885 -1.1771 44 1 1.9423 5.4142 -0.7490 45 1 2.1084 6.0158 0.9185 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016079216.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:16 Heat of formation + Delta-G solvation = 127.295294 kcal Electronic energy + Delta-G solvation = -27171.008173 eV Core-core repulsion = 23545.119999 eV Total energy + Delta-G solvation = -3625.888174 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.84360 -38.57847 -37.58618 -36.02283 -34.60075 -33.39335 -32.54506 -30.70460 -30.25226 -28.42216 -26.72269 -25.32548 -25.02880 -23.87682 -22.74660 -21.05344 -20.68431 -20.06506 -18.01135 -17.51845 -17.03485 -16.59599 -16.29971 -16.05187 -15.55087 -15.26768 -15.05869 -14.74669 -14.47151 -14.35174 -13.89916 -13.61332 -13.49946 -13.29649 -12.72509 -12.50800 -12.43879 -12.19426 -12.13227 -11.89755 -11.75021 -11.59528 -11.51139 -11.32225 -11.20599 -11.10053 -11.01366 -10.80332 -10.75985 -10.63875 -10.38817 -10.23029 -9.94537 -9.39324 -8.51790 -7.69163 -7.41822 -7.26662 -6.11013 -4.12235 1.24278 1.47938 1.58811 2.40803 2.56111 3.03739 3.07555 3.29920 3.38385 3.43012 3.82415 3.99454 4.12476 4.17271 4.21873 4.38996 4.45230 4.62730 4.66732 4.71212 4.77186 5.04748 5.05127 5.11135 5.18564 5.25778 5.29341 5.35098 5.42167 5.43398 5.48867 5.52978 5.59146 5.67786 5.73659 5.77444 6.10265 6.14409 6.42289 6.48585 6.95176 7.04938 7.24539 7.61514 7.74825 7.87037 7.96189 8.30110 8.94282 9.52741 10.99318 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.013446 B = 0.003601 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.849487 B = 7773.002978 C = 9046.794214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C 0.228 3.772 3 C -0.072 4.072 4 C 0.072 3.928 5 N -0.531 5.531 6 C 0.194 3.806 7 C -0.507 4.507 8 H 0.065 0.935 9 C 0.060 3.940 10 N -0.895 5.895 11 Si 0.896 3.104 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.283 1.283 15 C 0.300 3.700 16 N -0.362 5.362 17 N -0.277 5.277 18 C 0.266 3.734 19 N -0.496 5.496 20 C 0.473 3.527 21 S -0.577 6.577 22 C 0.118 3.882 23 C -0.142 4.142 24 C -0.125 4.125 25 C -0.123 4.123 26 C -0.043 4.043 27 H 0.098 0.902 28 H 0.124 0.876 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.011 0.989 32 H 0.040 0.960 33 H 0.262 0.738 34 H 0.074 0.926 35 H 0.126 0.874 36 H 0.091 0.909 37 H 0.112 0.888 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.106 0.894 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.734 23.587 -6.669 24.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.090 4.090 3 C -0.114 4.114 4 C -0.058 4.058 5 N -0.255 5.255 6 C 0.070 3.930 7 C -0.546 4.546 8 H 0.084 0.916 9 C -0.142 4.142 10 N -0.534 5.534 11 Si 0.724 3.276 12 H -0.196 1.196 13 H -0.212 1.212 14 H -0.209 1.209 15 C 0.091 3.909 16 N -0.155 5.155 17 N -0.098 5.098 18 C -0.014 4.014 19 N -0.199 5.199 20 C 0.113 3.887 21 S -0.450 6.450 22 C -0.003 4.003 23 C -0.180 4.180 24 C -0.163 4.163 25 C -0.161 4.161 26 C -0.083 4.083 27 H 0.116 0.884 28 H 0.142 0.858 29 H 0.115 0.885 30 H 0.079 0.921 31 H 0.028 0.972 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.144 0.856 36 H 0.109 0.891 37 H 0.131 0.869 38 H 0.111 0.889 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.103 0.897 44 H 0.124 0.876 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.818 22.605 -6.326 24.184 hybrid contribution -0.292 -0.454 0.094 0.548 sum -6.110 22.152 -6.232 23.809 Atomic orbital electron populations 1.81130 1.13081 1.09995 1.09499 1.29113 0.95126 0.92241 0.92506 1.20175 0.82031 1.06330 1.02830 1.22067 0.88461 0.99646 0.95625 1.62273 1.05647 1.17565 1.39980 1.19875 0.96183 0.78987 0.97933 1.21057 1.39737 0.93882 0.99895 0.91642 1.24921 0.95138 0.97345 0.96787 1.69936 1.41965 1.09518 1.32022 0.86455 0.78135 0.79431 0.83545 1.19644 1.21150 1.20885 1.22482 1.02146 0.71783 0.94513 1.49678 1.12952 1.10310 1.42533 1.77139 1.06373 1.04076 1.22169 1.24755 0.89406 0.93852 0.93425 1.46416 1.16875 1.10161 1.46416 1.23815 0.94500 0.81940 0.88452 1.93429 1.05106 1.90255 1.56198 1.22091 0.97687 0.79160 1.01358 1.22031 0.97758 0.98779 0.99406 1.21603 1.02357 0.97991 0.94330 1.21588 1.01337 0.94710 0.98463 1.20492 0.93287 0.90250 1.04230 0.88409 0.85784 0.88547 0.92059 0.97166 0.94207 0.92802 0.90852 0.85608 0.89118 0.86934 0.88879 0.90179 0.90890 0.90773 0.91271 0.89698 0.87601 0.87770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.29 18.54 42.15 0.78 -7.51 16 2 C 0.23 3.70 15.43 -20.76 -0.32 3.37 16 3 C -0.07 -1.08 5.05 -29.52 -0.15 -1.22 16 4 C 0.07 1.24 5.01 -3.82 -0.02 1.22 16 5 N -0.53 -10.11 4.83 -239.97 -1.16 -11.27 16 6 C 0.19 4.39 4.53 -4.97 -0.02 4.37 16 7 C -0.51 -13.15 8.40 -34.44 -0.29 -13.44 16 8 H 0.07 1.74 7.38 -52.48 -0.39 1.35 16 9 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 10 N -0.90 -24.88 13.29 55.43 0.74 -24.15 16 11 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 12 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 13 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 C 0.30 4.88 5.73 -63.31 -0.36 4.52 16 16 N -0.36 -5.56 3.35 -65.00 -0.22 -5.78 16 17 N -0.28 -3.62 11.50 33.05 0.38 -3.24 16 18 C 0.27 2.74 6.90 -153.94 -1.06 1.68 16 19 N -0.50 -5.72 3.08 -114.32 -0.35 -6.07 16 20 C 0.47 7.48 7.86 -86.75 -0.68 6.80 16 21 S -0.58 -11.27 29.65 -107.50 -3.19 -14.46 16 22 C 0.12 0.95 6.15 -3.93 -0.02 0.93 16 23 C -0.14 -0.68 5.54 -26.89 -0.15 -0.83 16 24 C -0.13 -0.40 5.66 -27.14 -0.15 -0.56 16 25 C -0.12 -0.49 5.68 -26.94 -0.15 -0.64 16 26 C -0.04 -0.25 5.54 -27.73 -0.15 -0.40 16 27 H 0.10 1.27 6.34 -51.93 -0.33 0.94 16 28 H 0.12 2.01 6.27 -51.93 -0.33 1.68 16 29 H 0.10 1.86 6.99 -51.93 -0.36 1.49 16 30 H 0.06 1.02 6.73 -51.93 -0.35 0.67 16 31 H 0.01 0.24 6.00 -51.93 -0.31 -0.07 16 32 H 0.04 0.99 7.91 -51.93 -0.41 0.58 16 33 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.07 1.03 6.07 -51.93 -0.32 0.71 16 35 H 0.13 2.18 7.48 -51.93 -0.39 1.79 16 36 H 0.09 0.62 7.82 -51.93 -0.41 0.22 16 37 H 0.11 1.07 7.70 -51.93 -0.40 0.67 16 38 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.08 0.45 5.66 -51.92 -0.29 0.16 16 40 H 0.07 0.21 8.09 -51.93 -0.42 -0.21 16 41 H 0.07 0.17 8.14 -51.93 -0.42 -0.26 16 42 H 0.07 0.37 7.84 -51.93 -0.41 -0.04 16 43 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 44 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.10 0.48 6.32 -51.93 -0.33 0.15 16 LS Contribution 373.50 15.07 5.63 5.63 Total: -1.00 -33.39 373.50 -12.31 -45.70 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -6.26 Total: -2.27 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: -3.64 Total: 7.30 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: 0.17 Total: -58.03 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -11.27 SS G_CDS: -3.19 Total: -14.46 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.39 -12.31 -45.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016079216.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.997 kcal (2) G-P(sol) polarization free energy of solvation -33.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds