Wall clock time and date at job start Tue Mar 31 2020 18:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53007 * 109.46751 * 243.46749 * 3 2 1 5 5 N 1.46904 * 109.46956 * 179.56163 * 4 3 2 6 6 C 1.46901 * 111.00291 * 298.11434 * 5 4 3 7 7 C 1.50701 * 109.46836 * 292.89950 * 6 5 4 8 8 H 1.08004 * 120.00216 * 354.95801 * 7 6 5 9 9 C 1.37876 * 120.00055 * 174.95260 * 7 6 5 10 10 N 1.31516 * 119.99853 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00060 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.46817 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47227 * 120.00098 * 11 9 7 14 14 H 1.48506 * 109.46799 * 240.00398 * 11 9 7 15 15 C 1.46905 * 110.99932 * 62.06506 * 5 4 3 16 16 N 1.46498 * 109.47070 * 66.04569 * 15 5 4 17 17 N 1.40163 * 126.35378 * 270.19661 * 16 15 5 18 18 C 1.29376 * 108.16892 * 180.35912 * 17 16 15 19 19 N 1.37499 * 108.81080 * 0.07299 * 18 17 16 20 20 C 1.34806 * 108.28064 * 359.35131 * 19 18 17 21 21 S 1.71197 * 126.28002 * 181.00417 * 20 19 18 22 22 C 1.46724 * 125.94302 * 178.87755 * 19 18 17 23 23 C 1.52977 * 109.52882 * 27.93185 * 22 19 18 24 24 C 1.52717 * 109.80038 * 270.50600 * 23 22 19 25 25 C 1.52488 * 110.55239 * 61.77903 * 24 23 22 26 26 C 1.50915 * 125.96808 * 180.34714 * 18 17 16 27 27 H 1.08999 * 109.47156 * 123.46786 * 3 2 1 28 28 H 1.08995 * 109.47573 * 3.46291 * 3 2 1 29 29 H 1.08998 * 109.47348 * 59.56306 * 4 3 2 30 30 H 1.08992 * 109.47075 * 299.55938 * 4 3 2 31 31 H 1.08999 * 109.46790 * 52.89956 * 6 5 4 32 32 H 1.08994 * 109.47358 * 172.90105 * 6 5 4 33 33 H 0.96998 * 119.99543 * 179.97438 * 10 9 7 34 34 H 1.09006 * 109.47038 * 306.04863 * 15 5 4 35 35 H 1.08997 * 109.47490 * 186.04491 * 15 5 4 36 36 H 1.08997 * 109.46668 * 267.91677 * 22 19 18 37 37 H 1.09000 * 109.45459 * 147.94025 * 22 19 18 38 38 H 1.08995 * 109.41817 * 150.40026 * 23 22 19 39 39 H 1.09008 * 109.36199 * 30.57004 * 23 22 19 40 40 H 1.09001 * 109.25913 * 301.50765 * 24 23 22 41 41 H 1.09001 * 109.23756 * 182.03948 * 24 23 22 42 42 H 1.09000 * 109.46590 * 273.49786 * 25 24 23 43 43 H 1.08999 * 109.46073 * 153.53523 * 25 24 23 44 44 H 1.08996 * 109.51266 * 346.61036 * 26 18 17 45 45 H 1.08997 * 109.51270 * 106.72130 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.6453 1.2907 5 7 4.5866 0.6365 1.2955 6 6 5.1050 -0.7376 1.2628 7 6 4.7605 -1.4352 2.5534 8 1 4.2838 -0.8874 3.3529 9 6 5.0538 -2.7728 2.7137 10 7 5.6347 -3.4398 1.7404 11 14 4.6261 -3.6377 4.3132 12 1 3.9844 -2.6725 5.2415 13 1 3.6896 -4.7563 4.0361 14 1 5.8651 -4.1716 4.9339 15 6 5.1214 1.4275 0.1791 16 7 4.7807 2.8390 0.3734 17 7 3.6235 3.4848 -0.0830 18 6 3.6860 4.7262 0.2761 19 7 4.8598 4.9306 0.9624 20 6 5.5209 3.7577 1.0281 21 16 7.0236 3.4838 1.8014 22 6 5.3210 6.2076 1.5186 23 6 4.1136 7.0834 1.8581 24 6 3.7339 7.9330 0.6472 25 6 3.3347 7.0445 -0.5261 26 6 2.6447 5.7827 -0.0014 27 1 2.9711 0.5675 -0.8573 28 1 2.9718 -1.0249 -0.0621 29 1 2.7481 0.0830 2.1482 30 1 2.7603 1.6733 1.3490 31 1 4.6560 -1.2755 0.4279 32 1 6.1878 -0.7146 1.1400 33 1 5.8414 -4.3808 1.8533 34 1 4.6880 1.0746 -0.7568 35 1 6.2052 1.3172 0.1419 36 1 5.9456 6.7185 0.7859 37 1 5.9003 6.0216 2.4230 38 1 4.3630 7.7360 2.6947 39 1 3.2718 6.4476 2.1329 40 1 4.5859 8.5485 0.3584 41 1 2.8964 8.5791 0.9101 42 1 4.2251 6.7641 -1.0888 43 1 2.6503 7.5885 -1.1771 44 1 1.9423 5.4142 -0.7490 45 1 2.1084 6.0158 0.9185 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000016079216.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:15 Heat of formation + Delta-G solvation = 108.281424 kcal Electronic energy + Delta-G solvation = -27171.832676 eV Core-core repulsion = 23545.119999 eV Total energy + Delta-G solvation = -3626.712677 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.90966 -39.76926 -38.50104 -37.39410 -35.46463 -34.84862 -34.08672 -31.89405 -31.20351 -29.71125 -28.02280 -26.46682 -25.79974 -25.33110 -24.13948 -21.98626 -21.82889 -20.84428 -19.17049 -18.81087 -18.35017 -17.98628 -17.42703 -17.30579 -16.75627 -16.40364 -16.01746 -15.90925 -15.60761 -15.37834 -15.22652 -14.88342 -14.29945 -14.21990 -13.94411 -13.71640 -13.61852 -13.43778 -13.24949 -13.07477 -12.99255 -12.86654 -12.67933 -12.54176 -12.52472 -12.37666 -12.07827 -12.01680 -11.85180 -11.74269 -11.60693 -11.39614 -11.37121 -11.07327 -10.56069 -9.23288 -8.90419 -8.75118 -8.16542 -6.22637 -0.02219 0.27881 0.66983 1.16914 1.41052 1.44947 1.53280 1.55077 1.69892 1.74915 2.42561 2.84999 2.94249 3.18241 3.24795 3.34085 3.55099 3.69585 3.85935 3.99196 4.05233 4.08800 4.13274 4.15885 4.18082 4.31849 4.47437 4.52562 4.60674 4.67761 4.76529 4.80569 4.90107 4.96550 5.00290 5.07529 5.20122 5.26451 5.30023 5.35814 5.39615 5.49464 5.67383 6.00717 6.13338 6.18465 6.43691 6.53330 6.89508 7.45342 8.93176 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.013446 B = 0.003601 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.849487 B = 7773.002978 C = 9046.794214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C 0.246 3.754 3 C -0.057 4.057 4 C 0.082 3.918 5 N -0.545 5.545 6 C 0.211 3.789 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.016 3.984 10 N -0.923 5.923 11 Si 0.951 3.049 12 H -0.271 1.271 13 H -0.279 1.279 14 H -0.283 1.283 15 C 0.306 3.694 16 N -0.363 5.363 17 N -0.294 5.294 18 C 0.283 3.717 19 N -0.482 5.482 20 C 0.476 3.524 21 S -0.670 6.670 22 C 0.109 3.891 23 C -0.134 4.134 24 C -0.121 4.121 25 C -0.118 4.118 26 C -0.043 4.043 27 H 0.126 0.874 28 H 0.116 0.884 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.014 0.986 32 H 0.012 0.988 33 H 0.264 0.736 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.110 0.890 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.054 0.946 43 H 0.109 0.891 44 H 0.120 0.880 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.151 26.151 -7.565 28.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.164 5.164 2 C -0.071 4.071 3 C -0.099 4.099 4 C -0.048 4.048 5 N -0.270 5.270 6 C 0.086 3.914 7 C -0.553 4.553 8 H 0.072 0.928 9 C -0.184 4.184 10 N -0.563 5.563 11 Si 0.777 3.223 12 H -0.196 1.196 13 H -0.205 1.205 14 H -0.209 1.209 15 C 0.096 3.904 16 N -0.153 5.153 17 N -0.115 5.115 18 C 0.004 3.996 19 N -0.182 5.182 20 C 0.111 3.889 21 S -0.544 6.544 22 C -0.011 4.011 23 C -0.172 4.172 24 C -0.158 4.158 25 C -0.157 4.157 26 C -0.083 4.083 27 H 0.144 0.856 28 H 0.133 0.867 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.032 0.968 32 H 0.030 0.970 33 H 0.073 0.927 34 H 0.120 0.880 35 H 0.127 0.873 36 H 0.123 0.877 37 H 0.112 0.888 38 H 0.128 0.872 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.113 0.887 42 H 0.073 0.927 43 H 0.128 0.872 44 H 0.138 0.862 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.273 25.226 -7.231 27.515 hybrid contribution 0.359 -1.076 0.319 1.178 sum -7.914 24.150 -6.911 26.337 Atomic orbital electron populations 1.81152 1.13893 1.10938 1.10447 1.29135 0.95027 0.91353 0.91604 1.20050 0.81240 1.05973 1.02612 1.21896 0.87173 0.99926 0.95847 1.62016 1.06836 1.15974 1.42132 1.19465 0.94514 0.80799 0.96617 1.21315 1.39046 0.94161 1.00825 0.92757 1.25581 0.95274 0.98140 0.99360 1.70015 1.43045 1.09777 1.33491 0.85609 0.77821 0.78461 0.80392 1.19598 1.20466 1.20911 1.22340 1.01447 0.72062 0.94583 1.49563 1.13762 1.09990 1.41987 1.77210 1.05234 1.05309 1.23762 1.25831 0.89047 0.93945 0.90781 1.46709 1.16526 1.09836 1.45108 1.23313 0.93668 0.83571 0.88332 1.93537 1.09168 1.91441 1.60287 1.22491 0.99664 0.78074 1.00853 1.22062 0.95728 0.98378 1.01012 1.21610 1.03492 0.97693 0.92991 1.21618 1.01154 0.93965 0.98933 1.20893 0.92166 0.89448 1.05754 0.85638 0.86666 0.90917 0.91141 0.96846 0.96982 0.92717 0.87978 0.87292 0.87690 0.88786 0.87154 0.90579 0.90138 0.88658 0.92675 0.87238 0.86196 0.85720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -16.82 18.54 20.01 0.37 -16.45 16 2 C 0.25 7.58 15.43 89.44 1.38 8.96 16 3 C -0.06 -1.63 5.05 28.79 0.15 -1.48 16 4 C 0.08 2.76 5.01 86.30 0.43 3.19 16 5 N -0.55 -21.07 4.83 -913.14 -4.41 -25.49 16 6 C 0.21 9.81 4.53 85.56 0.39 10.20 16 7 C -0.51 -27.26 8.40 25.60 0.21 -27.05 16 8 H 0.05 2.95 7.38 -2.91 -0.02 2.92 16 9 C 0.02 0.84 5.46 84.65 0.46 1.31 16 10 N -0.92 -52.00 13.29 21.45 0.28 -51.71 16 11 Si 0.95 43.79 29.54 68.60 2.03 45.81 16 12 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 13 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 14 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 15 C 0.31 9.95 5.73 170.81 0.98 10.93 16 16 N -0.36 -10.95 3.35 -359.55 -1.20 -12.16 16 17 N -0.29 -7.07 11.50 -49.35 -0.57 -7.64 16 18 C 0.28 5.11 6.90 137.72 0.95 6.06 16 19 N -0.48 -10.53 3.08 -515.60 -1.59 -12.12 16 20 C 0.48 15.21 7.86 179.00 1.41 16.61 16 21 S -0.67 -27.65 29.65 -56.49 -1.67 -29.33 16 22 C 0.11 1.60 6.15 86.33 0.53 2.13 16 23 C -0.13 -0.86 5.54 30.49 0.17 -0.69 16 24 C -0.12 -0.24 5.66 30.33 0.17 -0.07 16 25 C -0.12 -0.43 5.68 30.46 0.17 -0.26 16 26 C -0.04 -0.31 5.54 29.95 0.17 -0.15 16 27 H 0.13 2.91 6.34 -2.39 -0.02 2.90 16 28 H 0.12 3.63 6.27 -2.39 -0.01 3.61 16 29 H 0.07 2.82 6.99 -2.39 -0.02 2.80 16 30 H 0.07 2.26 6.73 -2.39 -0.02 2.24 16 31 H 0.01 0.63 6.00 -2.39 -0.01 0.62 16 32 H 0.01 0.63 7.91 -2.39 -0.02 0.61 16 33 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 34 H 0.10 2.72 6.07 -2.38 -0.01 2.70 16 35 H 0.11 3.95 7.48 -2.39 -0.02 3.94 16 36 H 0.11 1.27 7.82 -2.39 -0.02 1.25 16 37 H 0.09 1.80 7.70 -2.39 -0.02 1.78 16 38 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.08 0.59 5.66 -2.38 -0.01 0.57 16 40 H 0.08 0.12 8.09 -2.39 -0.02 0.10 16 41 H 0.09 -0.10 8.14 -2.39 -0.02 -0.12 16 42 H 0.05 0.39 7.84 -2.39 -0.02 0.38 16 43 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 44 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.13 0.54 6.32 -2.39 -0.02 0.53 16 Total: -1.00 -75.70 373.50 1.82 -73.88 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: 1.02 Total: 5.51 kcal Atomic # 6 Polarization: 22.12 SS G_CDS: 7.57 Total: 29.69 kcal Atomic # 7 Polarization: -118.45 SS G_CDS: -7.12 Total: -125.57 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: -27.65 SS G_CDS: -1.67 Total: -29.33 kcal Total: -75.70 1.82 -73.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016079216.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.161 kcal (2) G-P(sol) polarization free energy of solvation -75.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds