Wall clock time and date at job start Tue Mar 31 2020 18:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86794 * 120.00256 * 2 1 4 4 H 1.48500 * 109.47368 * 239.99954 * 3 2 1 5 5 H 1.48506 * 109.47223 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47404 * 119.99489 * 3 2 1 7 7 C 1.37878 * 119.99678 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99978 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00458 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47501 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00130 * 180.02562 * 10 9 7 12 12 O 1.21281 * 120.00293 * 359.97438 * 11 10 9 13 13 C 1.50695 * 119.99786 * 180.02562 * 11 10 9 14 14 N 1.46907 * 109.47251 * 179.97438 * 13 11 10 15 15 C 1.47848 * 110.99559 * 57.56442 * 14 13 11 16 16 C 1.54909 * 104.79469 * 146.36590 * 15 14 13 17 17 C 1.55400 * 101.74050 * 323.02014 * 16 15 14 18 18 C 1.47437 * 111.00458 * 178.41077 * 14 13 11 19 19 H 1.08994 * 109.89157 * 117.17445 * 18 14 13 20 20 C 1.50701 * 109.88839 * 356.14606 * 18 14 13 21 21 O 1.21280 * 120.00138 * 301.10880 * 20 18 14 22 22 N 1.34775 * 120.00237 * 121.10305 * 20 18 14 23 23 C 1.46491 * 120.00297 * 180.02562 * 22 20 18 24 24 C 1.50705 * 109.47133 * 180.02562 * 23 22 20 25 25 C 1.34515 * 125.78943 * 90.00042 * 24 23 22 26 26 C 1.41378 * 106.84022 * 179.97438 * 25 24 23 27 27 C 1.34521 * 106.84211 * 0.22932 * 26 25 24 28 28 O 1.34299 * 125.79019 * 269.97350 * 24 23 22 29 29 H 0.97006 * 120.00434 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.46811 * 60.00138 * 9 7 2 31 31 H 1.09003 * 109.47257 * 300.00269 * 9 7 2 32 32 H 0.96998 * 120.00038 * 0.02562 * 10 9 7 33 33 H 1.09000 * 109.47780 * 59.99695 * 13 11 10 34 34 H 1.08993 * 109.47613 * 299.99555 * 13 11 10 35 35 H 1.08998 * 110.37568 * 265.19544 * 15 14 13 36 36 H 1.08995 * 110.37308 * 27.53499 * 15 14 13 37 37 H 1.09001 * 110.98729 * 81.02041 * 16 15 14 38 38 H 1.08992 * 110.99103 * 204.83819 * 16 15 14 39 39 H 1.09003 * 110.67635 * 277.17228 * 17 16 15 40 40 H 1.08997 * 110.84253 * 153.86295 * 17 16 15 41 41 H 0.96997 * 119.99636 * 0.02562 * 22 20 18 42 42 H 1.09002 * 109.47160 * 60.00278 * 23 22 20 43 43 H 1.09003 * 109.47466 * 300.00305 * 23 22 20 44 44 H 1.08003 * 126.58111 * 359.94511 * 25 24 23 45 45 H 1.08000 * 126.58235 * 179.97438 * 26 25 24 46 46 H 1.07994 * 125.78989 * 179.77339 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2029 -3.6127 0.0015 11 6 1.7536 -4.8834 0.0019 12 8 0.5613 -5.1050 0.0029 13 6 2.7329 -6.0287 0.0022 14 7 1.9984 -7.3010 0.0032 15 6 1.0920 -7.3904 -1.1614 16 6 1.0813 -8.8924 -1.5400 17 6 2.5567 -9.2976 -1.2679 18 6 2.9258 -8.4466 -0.0346 19 1 2.8175 -9.0415 0.8723 20 6 4.3446 -7.9539 -0.1579 21 8 4.6686 -7.2691 -1.1051 22 7 5.2535 -8.2740 0.7843 23 6 6.6325 -7.7945 0.6647 24 6 7.4397 -8.2888 1.8375 25 6 8.1248 -9.4452 1.8893 26 6 8.7306 -9.5056 3.1654 27 6 8.3752 -8.3847 3.8189 28 8 7.5975 -7.6492 3.0078 29 1 -0.4851 0.8401 0.0004 30 1 0.6240 -2.5575 -0.8880 31 1 0.6246 -2.5563 0.8920 32 1 3.1566 -3.4355 0.0010 33 1 3.3597 -5.9708 0.8921 34 1 3.3595 -5.9714 -0.8878 35 1 0.0896 -7.0607 -0.8883 36 1 1.4766 -6.7933 -1.9882 37 1 0.4003 -9.4519 -0.8987 38 1 0.8259 -9.0284 -2.5908 39 1 3.1894 -9.0402 -2.1173 40 1 2.6309 -10.3607 -1.0388 41 1 4.9945 -8.8218 1.5417 42 1 6.6385 -6.7046 0.6527 43 1 7.0690 -8.1704 -0.2606 44 1 8.1978 -10.1858 1.1066 45 1 9.3550 -10.3010 3.5445 46 1 8.6677 -8.1201 4.8242 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000031557977.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:12 Heat of formation + Delta-G solvation = -67.163817 kcal Electronic energy + Delta-G solvation = -28734.627173 eV Core-core repulsion = 24625.260998 eV Total energy + Delta-G solvation = -4109.366176 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.55009 -42.00421 -40.35820 -38.61164 -36.21656 -36.13006 -34.39184 -33.93436 -33.29999 -31.91197 -30.19588 -29.76611 -27.40156 -26.89551 -24.54997 -23.29736 -22.70558 -22.40517 -21.67268 -21.48944 -20.96679 -19.23588 -18.68433 -18.20206 -17.68809 -17.46324 -17.05919 -16.73509 -16.62046 -16.36928 -16.16883 -16.08203 -15.65758 -15.37556 -14.92562 -14.59836 -14.50116 -14.27407 -14.01825 -13.85898 -13.75463 -13.54264 -13.39536 -13.15065 -12.99740 -12.97896 -12.87390 -12.69593 -12.33262 -12.26450 -12.00609 -11.75922 -11.53737 -11.25205 -10.88101 -10.81608 -10.69847 -10.30130 -9.87076 -9.57797 -9.30532 -8.31282 -6.48365 0.60853 1.31350 1.40562 1.45177 1.53371 1.61497 1.73048 1.94997 2.23053 2.30431 2.42997 3.00927 3.02990 3.44823 3.59324 3.64140 3.79364 3.98090 4.10892 4.11992 4.12902 4.22359 4.32510 4.35462 4.39269 4.50341 4.53575 4.82318 4.88863 4.90645 5.00196 5.01690 5.06072 5.13883 5.13926 5.20376 5.20820 5.28022 5.45576 5.57240 5.60648 5.72342 5.81694 5.83319 6.16935 6.35184 6.61277 6.85899 7.03581 7.20268 7.43458 8.80789 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009269 B = 0.002877 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3020.251508 B = 9730.425997 C =12239.003238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.986 3.014 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.560 4.560 8 H 0.080 0.920 9 C 0.271 3.729 10 N -0.711 5.711 11 C 0.496 3.504 12 O -0.579 6.579 13 C 0.024 3.976 14 N -0.496 5.496 15 C 0.043 3.957 16 C -0.118 4.118 17 C -0.119 4.119 18 C 0.053 3.947 19 H 0.134 0.866 20 C 0.505 3.495 21 O -0.566 6.566 22 N -0.709 5.709 23 C 0.203 3.797 24 C -0.056 4.056 25 C -0.182 4.182 26 C -0.229 4.229 27 C -0.031 4.031 28 O -0.193 6.193 29 H 0.270 0.730 30 H -0.013 1.013 31 H -0.011 1.011 32 H 0.404 0.596 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.023 0.977 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.118 0.882 41 H 0.417 0.583 42 H 0.073 0.927 43 H 0.108 0.892 44 H 0.166 0.834 45 H 0.171 0.829 46 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.484 -26.048 4.527 32.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.808 3.192 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.598 4.598 8 H 0.098 0.902 9 C 0.148 3.852 10 N -0.361 5.361 11 C 0.283 3.717 12 O -0.460 6.460 13 C -0.107 4.107 14 N -0.222 5.222 15 C -0.084 4.084 16 C -0.156 4.156 17 C -0.157 4.157 18 C -0.058 4.058 19 H 0.152 0.848 20 C 0.292 3.708 21 O -0.445 6.445 22 N -0.362 5.362 23 C 0.080 3.920 24 C -0.105 4.105 25 C -0.202 4.202 26 C -0.248 4.248 27 C -0.099 4.099 28 O -0.090 6.090 29 H 0.079 0.921 30 H 0.005 0.995 31 H 0.007 0.993 32 H 0.239 0.761 33 H 0.125 0.875 34 H 0.116 0.884 35 H 0.091 0.909 36 H 0.042 0.958 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.085 0.915 40 H 0.136 0.864 41 H 0.254 0.746 42 H 0.091 0.909 43 H 0.126 0.874 44 H 0.183 0.817 45 H 0.188 0.812 46 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 17.303 -25.313 4.384 30.974 hybrid contribution 0.815 1.084 -0.281 1.385 sum 18.118 -24.229 4.104 30.531 Atomic orbital electron populations 1.70128 1.08223 1.28704 1.49711 1.26072 0.95827 1.03882 0.93715 0.85198 0.77949 0.76534 0.79488 1.18785 1.20746 1.18602 1.21570 0.94184 0.90690 1.53307 0.90167 1.18515 0.88529 0.84100 0.94040 1.46203 1.11088 1.05629 1.73178 1.21146 0.89840 0.84745 0.75967 1.90606 1.18680 1.85156 1.51537 1.22643 0.94873 0.88368 1.04813 1.63936 1.15806 1.00010 1.42411 1.23090 0.97484 0.97971 0.89871 1.22780 0.96822 0.93060 1.02927 1.22815 0.96368 1.01140 0.95406 1.22938 0.86198 0.93290 1.03340 0.84806 1.21335 0.87984 0.79825 0.81697 1.90660 1.80849 1.39327 1.33674 1.46091 1.09270 1.54038 1.26785 1.19551 0.79980 0.99875 0.92625 1.22232 1.05675 0.94908 0.87730 1.21998 1.00427 0.98002 0.99729 1.22229 1.06273 1.01169 0.95093 1.24876 0.95425 0.91904 0.97656 1.84062 1.56250 1.45593 1.23068 0.92139 0.99536 0.99331 0.76087 0.87488 0.88381 0.90941 0.95836 0.88872 0.89237 0.91493 0.86409 0.74612 0.90878 0.87431 0.81659 0.81160 0.75042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.50 13.29 21.45 0.28 -57.22 16 2 C 0.00 0.28 5.46 84.66 0.46 0.74 16 3 Si 0.99 43.68 29.54 68.60 2.03 45.71 16 4 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 6 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 7 C -0.56 -31.95 9.28 25.60 0.24 -31.71 16 8 H 0.08 4.18 7.60 -2.91 -0.02 4.16 16 9 C 0.27 15.71 5.43 85.63 0.46 16.17 16 10 N -0.71 -33.23 5.55 -466.81 -2.59 -35.82 16 11 C 0.50 22.11 7.52 87.66 0.66 22.77 16 12 O -0.58 -30.15 14.16 -3.03 -0.04 -30.19 16 13 C 0.02 0.80 4.16 85.55 0.36 1.16 16 14 N -0.50 -14.65 5.07 -869.44 -4.41 -19.06 16 15 C 0.04 1.34 5.26 86.77 0.46 1.80 16 16 C -0.12 -2.32 7.08 32.07 0.23 -2.10 16 17 C -0.12 -1.95 6.46 31.87 0.21 -1.75 16 18 C 0.05 1.04 3.83 44.51 0.17 1.21 16 19 H 0.13 1.82 7.94 -2.39 -0.02 1.80 16 20 C 0.50 10.64 5.07 87.66 0.44 11.08 16 21 O -0.57 -16.18 13.82 -3.03 -0.04 -16.22 16 22 N -0.71 -10.80 5.55 -466.79 -2.59 -13.39 16 23 C 0.20 3.19 6.20 85.64 0.53 3.72 16 24 C -0.06 -0.84 6.69 24.83 0.17 -0.68 16 25 C -0.18 -2.21 10.81 22.19 0.24 -1.97 16 26 C -0.23 -2.43 10.91 22.19 0.24 -2.19 16 27 C -0.03 -0.35 12.09 66.97 0.81 0.46 16 28 O -0.19 -3.33 10.65 -2.42 -0.03 -3.36 16 29 H 0.27 15.55 8.31 -92.70 -0.77 14.77 16 30 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 31 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 32 H 0.40 16.34 8.32 -92.71 -0.77 15.56 16 33 H 0.11 3.23 7.60 -2.39 -0.02 3.21 16 34 H 0.10 3.41 5.37 -2.39 -0.01 3.40 16 35 H 0.07 2.69 6.90 -2.39 -0.02 2.67 16 36 H 0.02 0.81 7.76 -2.39 -0.02 0.80 16 37 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.09 1.55 8.14 -2.39 -0.02 1.54 16 39 H 0.07 1.30 7.54 -2.39 -0.02 1.28 16 40 H 0.12 1.10 8.14 -2.39 -0.02 1.09 16 41 H 0.42 4.49 8.32 -92.71 -0.77 3.71 16 42 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 45 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 46 H 0.23 0.91 8.06 -2.91 -0.02 0.88 16 Total: -1.00 -80.80 382.01 -2.24 -83.04 By element: Atomic # 1 Polarization: 28.33 SS G_CDS: -0.52 Total: 27.81 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: 5.67 Total: 18.72 kcal Atomic # 7 Polarization: -116.19 SS G_CDS: -9.30 Total: -125.49 kcal Atomic # 8 Polarization: -49.67 SS G_CDS: -0.11 Total: -49.78 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -80.80 -2.24 -83.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031557977.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.874 kcal (2) G-P(sol) polarization free energy of solvation -80.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds