Wall clock time and date at job start Tue Mar 31 2020 18:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86797 * 120.00172 * 2 1 4 4 H 1.48495 * 109.47225 * 273.82348 * 3 2 1 5 5 H 1.48502 * 109.47033 * 33.82724 * 3 2 1 6 6 H 1.48502 * 109.46806 * 153.82208 * 3 2 1 7 7 C 1.38946 * 119.99393 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00671 * 341.75001 * 7 2 1 9 9 N 1.37100 * 119.99646 * 161.75260 * 7 2 1 10 10 C 1.34774 * 120.00309 * 320.10705 * 9 7 2 11 11 O 1.21295 * 119.99479 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00457 * 180.27556 * 10 9 7 13 13 N 1.46499 * 109.47020 * 179.72934 * 12 10 9 14 14 C 1.33862 * 124.19023 * 269.69598 * 13 12 10 15 15 O 1.21538 * 123.79689 * 0.02562 * 14 13 12 16 16 N 1.34689 * 112.42091 * 179.84383 * 14 13 12 17 17 C 1.46833 * 106.42334 * 0.40669 * 16 14 13 18 18 C 1.52476 * 110.54054 * 118.27419 * 17 16 14 19 19 C 1.53079 * 109.58365 * 64.28639 * 18 17 16 20 20 C 1.53012 * 109.41745 * 59.14989 * 19 18 17 21 21 C 1.52999 * 109.50948 * 299.52637 * 20 19 18 22 22 C 1.52474 * 110.54044 * 241.25490 * 17 16 14 23 23 C 1.34910 * 124.19942 * 90.00352 * 13 12 10 24 24 O 1.21233 * 127.25333 * 359.93489 * 23 13 12 25 25 C 1.46501 * 119.99984 * 140.10884 * 9 7 2 26 26 C 1.53004 * 117.50146 * 2.28841 * 25 9 7 27 27 C 1.52998 * 60.00147 * 252.50980 * 26 25 9 28 28 H 0.97000 * 119.99905 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.46561 * 299.72865 * 12 10 9 30 30 H 1.08997 * 109.46911 * 59.72450 * 12 10 9 31 31 H 0.96999 * 126.78745 * 180.13846 * 16 14 13 32 32 H 1.09003 * 109.45112 * 184.32279 * 18 17 16 33 33 H 1.08999 * 109.44868 * 304.25373 * 18 17 16 34 34 H 1.09003 * 109.48073 * 299.16888 * 19 18 17 35 35 H 1.09000 * 109.48693 * 179.14303 * 19 18 17 36 36 H 1.09002 * 109.46248 * 179.51262 * 20 19 18 37 37 H 1.09004 * 109.46023 * 59.53470 * 20 19 18 38 38 H 1.09000 * 109.47969 * 300.48554 * 21 20 19 39 39 H 1.09003 * 109.48815 * 180.46079 * 21 20 19 40 40 H 1.09000 * 109.45419 * 55.74403 * 22 17 16 41 41 H 1.09001 * 109.44955 * 175.69286 * 22 17 16 42 42 H 1.09006 * 115.55171 * 147.99720 * 25 9 7 43 43 H 1.08997 * 117.49430 * 0.02562 * 26 25 9 44 44 H 1.08995 * 117.49987 * 145.01814 * 26 25 9 45 45 H 1.08995 * 117.49788 * 252.51059 * 27 26 25 46 46 H 1.08999 * 117.52098 * 107.47696 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4148 2.0930 -1.3969 5 1 1.4884 2.6279 0.7794 6 1 3.5838 1.4180 0.6177 7 6 2.0087 -1.2034 0.0005 8 1 1.5095 -2.1150 0.2938 9 7 3.3280 -1.2335 -0.3712 10 6 3.7541 -0.4816 -1.4054 11 8 2.9703 0.2221 -2.0069 12 6 5.2030 -0.5193 -1.8181 13 7 5.4086 0.3733 -2.9614 14 6 5.3009 -0.0058 -4.2406 15 8 5.0196 -1.1356 -4.5895 16 7 5.5355 1.0062 -5.0979 17 6 5.8413 2.1839 -4.2761 18 6 7.2546 2.6814 -4.5589 19 6 7.3485 3.1628 -6.0090 20 6 6.3381 4.2889 -6.2376 21 6 4.9239 3.7680 -5.9738 22 6 4.8201 3.2888 -4.5236 23 6 5.7356 1.6779 -2.8556 24 8 5.9078 2.3111 -1.8362 25 6 4.2747 -2.0830 0.3557 26 6 3.7199 -2.9531 1.4853 27 6 4.5705 -1.7245 1.8134 28 1 -0.4850 0.8401 -0.0004 29 1 5.8264 -0.1930 -0.9855 30 1 5.4746 -1.5371 -2.0982 31 1 5.5115 0.9642 -6.0667 32 1 7.4904 3.5063 -3.8866 33 1 7.9639 1.8693 -4.3994 34 1 7.1277 2.3343 -6.6821 35 1 8.3551 3.5321 -6.2051 36 1 6.4103 4.6382 -7.2676 37 1 6.5539 5.1138 -5.5584 38 1 4.7110 2.9376 -6.6470 39 1 4.2038 4.5682 -6.1446 40 1 3.8171 2.9040 -4.3394 41 1 5.0180 4.1233 -3.8509 42 1 5.0929 -2.4903 -0.2384 43 1 2.6504 -2.8938 1.6872 44 1 4.1728 -3.9332 1.6344 45 1 5.5830 -1.8962 2.1784 46 1 4.0610 -0.8563 2.2314 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065895111.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:44 Heat of formation + Delta-G solvation = -34.945998 kcal Electronic energy + Delta-G solvation = -31245.579016 eV Core-core repulsion = 27137.609909 eV Total energy + Delta-G solvation = -4107.969106 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.61335 -39.28781 -38.55541 -38.08965 -36.48150 -35.54634 -33.96258 -32.89394 -31.53571 -31.22481 -29.95059 -28.64174 -24.93509 -24.01797 -23.11134 -22.52128 -22.01204 -21.54357 -20.64071 -20.01289 -19.09477 -17.83280 -17.54325 -16.62376 -16.47288 -15.94785 -15.68667 -15.50566 -15.25154 -15.06433 -14.57410 -14.49029 -14.08611 -14.01419 -13.92156 -13.32835 -13.24130 -13.15236 -12.85021 -12.56934 -12.54325 -12.50218 -11.94971 -11.68697 -11.54096 -11.22966 -11.15523 -10.88601 -10.76484 -10.70083 -10.58996 -10.33577 -10.10808 -10.00982 -9.89757 -9.85430 -9.61227 -9.40130 -8.55373 -8.46796 -7.55235 -6.19763 -3.97700 1.77607 2.29358 3.14220 3.19669 3.25991 3.53860 3.68637 3.75702 3.91589 4.26997 4.30040 4.35102 4.45692 4.62452 4.67495 4.72857 4.86221 5.06018 5.08080 5.12177 5.15229 5.27490 5.36204 5.38164 5.40857 5.50459 5.54119 5.56763 5.66013 5.68723 5.70461 5.73583 5.77567 5.88348 5.89301 6.00521 6.07164 6.14668 6.24495 6.63531 6.83003 6.83894 7.21208 7.51834 7.80299 7.88896 8.28391 8.70347 8.82415 9.38959 9.70409 10.83334 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016402 B = 0.004479 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.745309 B = 6249.662512 C = 6868.304688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.089 3.911 3 Si 0.923 3.077 4 H -0.255 1.255 5 H -0.314 1.314 6 H -0.281 1.281 7 C -0.347 4.347 8 H 0.100 0.900 9 N -0.426 5.426 10 C 0.432 3.568 11 O -0.531 6.531 12 C 0.104 3.896 13 N -0.555 5.555 14 C 0.711 3.289 15 O -0.539 6.539 16 N -0.719 5.719 17 C 0.130 3.870 18 C -0.113 4.113 19 C -0.115 4.115 20 C -0.123 4.123 21 C -0.115 4.115 22 C -0.118 4.118 23 C 0.534 3.466 24 O -0.464 6.464 25 C 0.055 3.945 26 C -0.168 4.168 27 C -0.197 4.197 28 H 0.272 0.728 29 H 0.110 0.890 30 H 0.115 0.885 31 H 0.436 0.564 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.129 5.572 -9.516 20.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.120 4.120 3 Si 0.755 3.245 4 H -0.182 1.182 5 H -0.244 1.244 6 H -0.207 1.207 7 C -0.473 4.473 8 H 0.117 0.883 9 N -0.147 5.147 10 C 0.221 3.779 11 O -0.414 6.414 12 C -0.021 4.021 13 N -0.300 5.300 14 C 0.412 3.588 15 O -0.412 6.412 16 N -0.384 5.384 17 C 0.039 3.961 18 C -0.151 4.151 19 C -0.153 4.153 20 C -0.161 4.161 21 C -0.153 4.153 22 C -0.156 4.156 23 C 0.321 3.679 24 O -0.333 6.333 25 C -0.051 4.051 26 C -0.206 4.206 27 C -0.235 4.235 28 H 0.082 0.918 29 H 0.128 0.872 30 H 0.133 0.867 31 H 0.280 0.720 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.130 0.870 43 H 0.130 0.870 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 16.462 5.656 -9.340 19.755 hybrid contribution 0.222 0.652 -0.172 0.710 sum 16.684 6.308 -9.513 20.215 Atomic orbital electron populations 1.69738 1.06822 1.28251 1.45053 1.25324 0.95007 0.99634 0.92016 0.86192 0.78693 0.81642 0.77942 1.18198 1.24446 1.20686 1.18797 0.82773 0.96065 1.49625 0.88256 1.43054 1.07901 1.38582 1.25144 1.20229 0.89366 0.85938 0.82395 1.90535 1.55157 1.41361 1.54374 1.21552 0.98117 0.95058 0.87357 1.45893 1.64006 1.12328 1.07777 1.15801 0.77274 0.84953 0.80794 1.90994 1.52056 1.18998 1.79134 1.45471 1.75434 1.08839 1.08630 1.21000 0.98491 0.88506 0.88138 1.21679 0.92661 1.02088 0.98707 1.21516 0.99855 0.98620 0.95308 1.21611 0.94508 0.98146 1.01825 1.21514 0.97264 1.01141 0.95380 1.21701 0.98666 0.96804 0.98465 1.20646 0.74741 0.81466 0.91095 1.90777 1.46828 1.61371 1.34281 1.21887 0.95837 0.99249 0.88088 1.23119 1.01711 0.93931 1.01812 1.23291 1.00158 1.00403 0.99689 0.91788 0.87201 0.86664 0.71966 0.89314 0.90748 0.91684 0.90988 0.91531 0.91424 0.91679 0.90865 0.89992 0.89440 0.87042 0.87006 0.89256 0.89306 0.88472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.82 13.96 55.50 0.77 -26.05 16 2 C 0.09 2.69 4.90 -17.47 -0.09 2.60 16 3 Si 0.92 25.79 24.55 -169.99 -4.17 21.62 16 4 H -0.26 -7.49 6.11 56.52 0.35 -7.14 16 5 H -0.31 -8.63 7.11 56.52 0.40 -8.23 16 6 H -0.28 -7.70 7.11 56.52 0.40 -7.30 16 7 C -0.35 -9.84 8.76 -14.93 -0.13 -9.97 16 8 H 0.10 2.91 6.96 -52.49 -0.37 2.54 16 9 N -0.43 -10.40 2.56 -107.72 -0.28 -10.68 16 10 C 0.43 10.63 5.95 -10.98 -0.07 10.56 16 11 O -0.53 -15.14 11.30 5.54 0.06 -15.08 16 12 C 0.10 1.98 4.82 -5.19 -0.03 1.96 16 13 N -0.56 -10.22 2.10 -122.09 -0.26 -10.48 16 14 C 0.71 12.49 8.63 -87.81 -0.76 11.73 16 15 O -0.54 -11.08 17.48 5.33 0.09 -10.99 16 16 N -0.72 -9.24 5.25 -53.87 -0.28 -9.52 16 17 C 0.13 1.64 0.83 -133.10 -0.11 1.53 16 18 C -0.11 -1.03 4.98 -26.96 -0.13 -1.16 16 19 C -0.12 -0.77 5.82 -26.68 -0.16 -0.93 16 20 C -0.12 -0.83 5.91 -26.73 -0.16 -0.99 16 21 C -0.12 -0.99 5.81 -26.69 -0.16 -1.14 16 22 C -0.12 -1.43 4.98 -26.96 -0.13 -1.57 16 23 C 0.53 9.25 6.94 -10.70 -0.07 9.17 16 24 O -0.46 -9.11 17.77 5.60 0.10 -9.01 16 25 C 0.06 1.03 5.86 -67.93 -0.40 0.63 16 26 C -0.17 -2.86 9.80 -26.73 -0.26 -3.12 16 27 C -0.20 -3.32 10.37 -26.73 -0.28 -3.59 16 28 H 0.27 8.01 8.31 -40.82 -0.34 7.67 16 29 H 0.11 1.87 7.98 -51.93 -0.41 1.45 16 30 H 0.12 1.91 7.28 -51.93 -0.38 1.53 16 31 H 0.44 4.34 7.75 -40.82 -0.32 4.02 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.41 7.35 -51.93 -0.38 0.03 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.53 7.36 -51.93 -0.38 0.15 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.11 1.69 6.98 -51.93 -0.36 1.33 16 43 H 0.11 2.18 6.49 -51.93 -0.34 1.85 16 44 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 46 H 0.10 1.89 8.14 -51.93 -0.42 1.46 16 LS Contribution 365.64 15.07 5.51 5.51 Total: -1.00 -37.71 365.64 -8.15 -45.86 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -6.78 Total: 3.10 kcal Atomic # 6 Polarization: 18.64 SS G_CDS: -2.92 Total: 15.72 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: -0.04 Total: -56.72 kcal Atomic # 8 Polarization: -35.33 SS G_CDS: 0.26 Total: -35.08 kcal Atomic # 14 Polarization: 25.79 SS G_CDS: -4.17 Total: 21.62 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -37.71 -8.15 -45.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065895111.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.915 kcal (2) G-P(sol) polarization free energy of solvation -37.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds