Wall clock time and date at job start Tue Mar 31 2020 18:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86797 * 120.00172 * 2 1 4 4 H 1.48495 * 109.47225 * 273.82348 * 3 2 1 5 5 H 1.48502 * 109.47033 * 33.82724 * 3 2 1 6 6 H 1.48502 * 109.46806 * 153.82208 * 3 2 1 7 7 C 1.38946 * 119.99393 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00671 * 341.75001 * 7 2 1 9 9 N 1.37100 * 119.99646 * 161.75260 * 7 2 1 10 10 C 1.34774 * 120.00309 * 320.10705 * 9 7 2 11 11 O 1.21295 * 119.99479 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00457 * 180.27556 * 10 9 7 13 13 N 1.46499 * 109.47020 * 179.72934 * 12 10 9 14 14 C 1.33862 * 124.19023 * 269.69598 * 13 12 10 15 15 O 1.21538 * 123.79689 * 0.02562 * 14 13 12 16 16 N 1.34689 * 112.42091 * 179.84383 * 14 13 12 17 17 C 1.46833 * 106.42334 * 0.40669 * 16 14 13 18 18 C 1.52476 * 110.54054 * 118.27419 * 17 16 14 19 19 C 1.53079 * 109.58365 * 64.28639 * 18 17 16 20 20 C 1.53012 * 109.41745 * 59.14989 * 19 18 17 21 21 C 1.52999 * 109.50948 * 299.52637 * 20 19 18 22 22 C 1.52474 * 110.54044 * 241.25490 * 17 16 14 23 23 C 1.34910 * 124.19942 * 90.00352 * 13 12 10 24 24 O 1.21233 * 127.25333 * 359.93489 * 23 13 12 25 25 C 1.46501 * 119.99984 * 140.10884 * 9 7 2 26 26 C 1.53004 * 117.50146 * 2.28841 * 25 9 7 27 27 C 1.52998 * 60.00147 * 252.50980 * 26 25 9 28 28 H 0.97000 * 119.99905 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.46561 * 299.72865 * 12 10 9 30 30 H 1.08997 * 109.46911 * 59.72450 * 12 10 9 31 31 H 0.96999 * 126.78745 * 180.13846 * 16 14 13 32 32 H 1.09003 * 109.45112 * 184.32279 * 18 17 16 33 33 H 1.08999 * 109.44868 * 304.25373 * 18 17 16 34 34 H 1.09003 * 109.48073 * 299.16888 * 19 18 17 35 35 H 1.09000 * 109.48693 * 179.14303 * 19 18 17 36 36 H 1.09002 * 109.46248 * 179.51262 * 20 19 18 37 37 H 1.09004 * 109.46023 * 59.53470 * 20 19 18 38 38 H 1.09000 * 109.47969 * 300.48554 * 21 20 19 39 39 H 1.09003 * 109.48815 * 180.46079 * 21 20 19 40 40 H 1.09000 * 109.45419 * 55.74403 * 22 17 16 41 41 H 1.09001 * 109.44955 * 175.69286 * 22 17 16 42 42 H 1.09006 * 115.55171 * 147.99720 * 25 9 7 43 43 H 1.08997 * 117.49430 * 0.02562 * 26 25 9 44 44 H 1.08995 * 117.49987 * 145.01814 * 26 25 9 45 45 H 1.08995 * 117.49788 * 252.51059 * 27 26 25 46 46 H 1.08999 * 117.52098 * 107.47696 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4148 2.0930 -1.3969 5 1 1.4884 2.6279 0.7794 6 1 3.5838 1.4180 0.6177 7 6 2.0087 -1.2034 0.0005 8 1 1.5095 -2.1150 0.2938 9 7 3.3280 -1.2335 -0.3712 10 6 3.7541 -0.4816 -1.4054 11 8 2.9703 0.2221 -2.0069 12 6 5.2030 -0.5193 -1.8181 13 7 5.4086 0.3733 -2.9614 14 6 5.3009 -0.0058 -4.2406 15 8 5.0196 -1.1356 -4.5895 16 7 5.5355 1.0062 -5.0979 17 6 5.8413 2.1839 -4.2761 18 6 7.2546 2.6814 -4.5589 19 6 7.3485 3.1628 -6.0090 20 6 6.3381 4.2889 -6.2376 21 6 4.9239 3.7680 -5.9738 22 6 4.8201 3.2888 -4.5236 23 6 5.7356 1.6779 -2.8556 24 8 5.9078 2.3111 -1.8362 25 6 4.2747 -2.0830 0.3557 26 6 3.7199 -2.9531 1.4853 27 6 4.5705 -1.7245 1.8134 28 1 -0.4850 0.8401 -0.0004 29 1 5.8264 -0.1930 -0.9855 30 1 5.4746 -1.5371 -2.0982 31 1 5.5115 0.9642 -6.0667 32 1 7.4904 3.5063 -3.8866 33 1 7.9639 1.8693 -4.3994 34 1 7.1277 2.3343 -6.6821 35 1 8.3551 3.5321 -6.2051 36 1 6.4103 4.6382 -7.2676 37 1 6.5539 5.1138 -5.5584 38 1 4.7110 2.9376 -6.6470 39 1 4.2038 4.5682 -6.1446 40 1 3.8171 2.9040 -4.3394 41 1 5.0180 4.1233 -3.8509 42 1 5.0929 -2.4903 -0.2384 43 1 2.6504 -2.8938 1.6872 44 1 4.1728 -3.9332 1.6344 45 1 5.5830 -1.8962 2.1784 46 1 4.0610 -0.8563 2.2314 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065895111.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:43 Heat of formation + Delta-G solvation = -62.408553 kcal Electronic energy + Delta-G solvation = -31246.769881 eV Core-core repulsion = 27137.609909 eV Total energy + Delta-G solvation = -4109.159972 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.88819 -41.05600 -39.90569 -39.21555 -38.13998 -36.92434 -35.27323 -34.82672 -33.54292 -31.96261 -30.90648 -30.24431 -26.82825 -25.28532 -23.87473 -23.83646 -23.36546 -23.00269 -22.03514 -21.21405 -20.50462 -19.36902 -19.12620 -18.25094 -17.82133 -17.46888 -17.25606 -16.83306 -16.69921 -16.31177 -15.99831 -15.75703 -15.38388 -15.32396 -15.23295 -15.10504 -14.90655 -14.70190 -14.06125 -13.79688 -13.66686 -13.56327 -13.37812 -13.30057 -12.98713 -12.48511 -12.28826 -12.25957 -12.23705 -12.06700 -11.82676 -11.73827 -11.48805 -11.47616 -11.42810 -11.26126 -10.99714 -10.83055 -10.54627 -10.35936 -9.51275 -8.50789 -6.24493 0.43724 0.96681 1.07456 1.24947 1.40556 1.72143 1.82972 2.03804 2.32632 2.53262 2.76971 2.88659 3.16379 3.35517 3.49417 3.63325 3.80337 3.97011 3.99360 4.02035 4.06800 4.14448 4.15494 4.24025 4.28735 4.34379 4.41301 4.47322 4.55825 4.74565 4.87736 4.93556 4.94075 4.96457 5.10719 5.15302 5.20500 5.29070 5.30757 5.44071 5.48918 5.59936 5.71291 5.75290 5.89599 6.20145 6.60662 6.75537 6.99551 7.21842 7.68718 8.56005 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016402 B = 0.004479 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.745309 B = 6249.662512 C = 6868.304688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.046 3.954 3 Si 0.972 3.028 4 H -0.282 1.282 5 H -0.313 1.313 6 H -0.275 1.275 7 C -0.335 4.335 8 H 0.080 0.920 9 N -0.442 5.442 10 C 0.422 3.578 11 O -0.580 6.580 12 C 0.110 3.890 13 N -0.566 5.566 14 C 0.705 3.295 15 O -0.574 6.574 16 N -0.694 5.694 17 C 0.138 3.862 18 C -0.107 4.107 19 C -0.111 4.111 20 C -0.119 4.119 21 C -0.110 4.110 22 C -0.118 4.118 23 C 0.522 3.478 24 O -0.493 6.493 25 C 0.030 3.970 26 C -0.162 4.162 27 C -0.181 4.181 28 H 0.272 0.728 29 H 0.135 0.865 30 H 0.144 0.856 31 H 0.451 0.549 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.041 0.959 41 H 0.087 0.913 42 H 0.156 0.844 43 H 0.076 0.924 44 H 0.133 0.867 45 H 0.137 0.863 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.110 5.683 -10.733 24.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.159 4.159 3 Si 0.805 3.195 4 H -0.211 1.211 5 H -0.243 1.243 6 H -0.200 1.200 7 C -0.462 4.462 8 H 0.098 0.902 9 N -0.162 5.162 10 C 0.213 3.787 11 O -0.465 6.465 12 C -0.015 4.015 13 N -0.310 5.310 14 C 0.406 3.594 15 O -0.450 6.450 16 N -0.360 5.360 17 C 0.047 3.953 18 C -0.146 4.146 19 C -0.148 4.148 20 C -0.157 4.157 21 C -0.148 4.148 22 C -0.157 4.157 23 C 0.310 3.690 24 O -0.364 6.364 25 C -0.074 4.074 26 C -0.199 4.199 27 C -0.220 4.220 28 H 0.082 0.918 29 H 0.153 0.847 30 H 0.162 0.838 31 H 0.299 0.701 32 H 0.111 0.889 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.113 0.887 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.060 0.940 41 H 0.106 0.894 42 H 0.173 0.827 43 H 0.095 0.905 44 H 0.151 0.849 45 H 0.155 0.845 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 20.485 5.775 -10.560 23.759 hybrid contribution -1.008 0.534 0.209 1.160 sum 19.477 6.309 -10.351 22.941 Atomic orbital electron populations 1.69807 1.07757 1.28551 1.48268 1.25852 0.95418 1.01736 0.92851 0.85397 0.78152 0.79787 0.76150 1.21063 1.24326 1.19981 1.18737 0.85060 0.94818 1.47632 0.90216 1.43263 1.07556 1.39381 1.25997 1.21283 0.91600 0.84329 0.81517 1.90494 1.57105 1.43233 1.55710 1.21551 0.94015 0.97198 0.88708 1.46083 1.64015 1.12911 1.08015 1.15974 0.77169 0.85216 0.81009 1.90964 1.53887 1.20553 1.79581 1.45373 1.73829 1.07705 1.09058 1.21161 1.01141 0.87953 0.85023 1.21749 0.89589 1.02420 1.00799 1.21552 1.01139 0.98862 0.93256 1.21610 0.92698 0.98169 1.03174 1.21533 0.99259 1.01563 0.92444 1.21728 0.96189 0.96445 1.01358 1.21489 0.73685 0.81030 0.92751 1.90745 1.48164 1.61746 1.35782 1.22388 0.96227 0.99571 0.89178 1.23165 1.00171 0.96155 1.00450 1.23341 1.02171 0.98983 0.97464 0.91846 0.84729 0.83811 0.70101 0.88900 0.90010 0.90839 0.88689 0.89432 0.91160 0.91080 0.90299 0.94022 0.89447 0.82667 0.90550 0.84883 0.84536 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -58.84 13.96 21.66 0.30 -58.54 16 2 C 0.05 2.86 4.90 84.93 0.42 3.27 16 3 Si 0.97 55.65 24.55 68.60 1.68 57.33 16 4 H -0.28 -17.28 6.11 99.48 0.61 -16.67 16 5 H -0.31 -17.44 7.11 99.48 0.71 -16.73 16 6 H -0.27 -15.08 7.11 99.48 0.71 -14.37 16 7 C -0.34 -19.61 8.76 84.04 0.74 -18.87 16 8 H 0.08 4.89 6.96 -2.91 -0.02 4.87 16 9 N -0.44 -21.53 2.56 -613.11 -1.57 -23.10 16 10 C 0.42 20.83 5.95 87.66 0.52 21.35 16 11 O -0.58 -33.99 11.30 -3.08 -0.03 -34.03 16 12 C 0.11 4.02 4.82 85.63 0.41 4.44 16 13 N -0.57 -20.40 2.10 -777.30 -1.63 -22.03 16 14 C 0.71 24.23 8.63 179.37 1.55 25.78 16 15 O -0.57 -23.28 17.48 -3.83 -0.07 -23.35 16 16 N -0.69 -16.84 5.25 -442.68 -2.32 -19.16 16 17 C 0.14 3.30 0.83 2.59 0.00 3.30 16 18 C -0.11 -1.64 4.98 30.45 0.15 -1.49 16 19 C -0.11 -1.02 5.82 30.62 0.18 -0.84 16 20 C -0.12 -1.16 5.91 30.60 0.18 -0.98 16 21 C -0.11 -1.66 5.81 30.62 0.18 -1.48 16 22 C -0.12 -2.84 4.98 30.45 0.15 -2.68 16 23 C 0.52 17.79 6.94 87.78 0.61 18.40 16 24 O -0.49 -19.28 17.77 -2.89 -0.05 -19.33 16 25 C 0.03 1.05 5.86 44.99 0.26 1.32 16 26 C -0.16 -5.15 9.80 30.60 0.30 -4.85 16 27 C -0.18 -5.61 10.37 30.60 0.32 -5.29 16 28 H 0.27 16.81 8.31 -92.71 -0.77 16.04 16 29 H 0.13 4.23 7.98 -2.38 -0.02 4.21 16 30 H 0.14 4.38 7.28 -2.39 -0.02 4.36 16 31 H 0.45 8.00 7.75 -92.71 -0.72 7.28 16 32 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.07 0.59 7.35 -2.39 -0.02 0.57 16 35 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.07 0.98 7.36 -2.39 -0.02 0.97 16 39 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.16 4.02 6.98 -2.38 -0.02 4.01 16 43 H 0.08 3.01 6.49 -2.39 -0.02 2.99 16 44 H 0.13 3.07 8.14 -2.39 -0.02 3.05 16 45 H 0.14 2.96 8.14 -2.39 -0.02 2.94 16 46 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -88.59 365.64 2.47 -86.11 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.19 Total: 14.71 kcal Atomic # 6 Polarization: 35.41 SS G_CDS: 5.97 Total: 41.37 kcal Atomic # 7 Polarization: -117.61 SS G_CDS: -5.22 Total: -122.82 kcal Atomic # 8 Polarization: -76.55 SS G_CDS: -0.15 Total: -76.70 kcal Atomic # 14 Polarization: 55.65 SS G_CDS: 1.68 Total: 57.33 kcal Total: -88.59 2.47 -86.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065895111.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.706 kcal (2) G-P(sol) polarization free energy of solvation -88.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds