Wall clock time and date at job start Tue Mar 31 2020 18:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86800 * 119.99681 * 2 1 4 4 H 1.48502 * 109.46963 * 239.99845 * 3 2 1 5 5 H 1.48497 * 109.47205 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47132 * 119.99986 * 3 2 1 7 7 C 1.38944 * 119.99912 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00000 * 197.98652 * 7 2 1 9 9 N 1.37102 * 120.00400 * 17.99414 * 7 2 1 10 10 C 1.34776 * 119.99776 * 44.48242 * 9 7 2 11 11 O 1.21296 * 120.00397 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99895 * 180.02562 * 10 9 7 13 13 C 1.53000 * 109.47232 * 180.02562 * 12 10 9 14 14 N 1.46500 * 109.47423 * 180.02562 * 13 12 10 15 15 C 1.34006 * 124.22333 * 90.01641 * 14 13 12 16 16 O 1.21537 * 123.82100 * 359.95239 * 15 14 13 17 17 N 1.34985 * 112.36686 * 179.97438 * 15 14 13 18 18 C 1.45945 * 105.99858 * 0.02562 * 17 15 14 19 19 C 1.53565 * 112.01122 * 238.41793 * 18 17 15 20 20 C 1.54510 * 104.07858 * 275.01320 * 19 18 17 21 21 C 1.53962 * 106.66316 * 337.67566 * 20 19 18 22 22 C 1.53570 * 112.01393 * 121.57248 * 18 17 15 23 23 C 1.35212 * 124.22095 * 269.99951 * 14 13 12 24 24 O 1.21239 * 127.46510 * 0.04031 * 23 14 13 25 25 C 1.46494 * 119.99976 * 224.48481 * 9 7 2 26 26 C 1.52998 * 117.49831 * 3.27155 * 25 9 7 27 27 C 1.53003 * 117.49901 * 294.60948 * 25 9 7 28 28 H 0.96994 * 119.99976 * 354.95967 * 1 2 3 29 29 H 1.09000 * 109.47078 * 59.99776 * 12 10 9 30 30 H 1.09002 * 109.47070 * 299.99496 * 12 10 9 31 31 H 1.09000 * 109.47371 * 59.99834 * 13 12 10 32 32 H 1.09004 * 109.47078 * 299.99822 * 13 12 10 33 33 H 0.97000 * 127.00103 * 180.02562 * 17 15 14 34 34 H 1.08997 * 110.50619 * 156.36777 * 19 18 17 35 35 H 1.09001 * 110.51103 * 33.66163 * 19 18 17 36 36 H 1.08999 * 110.01616 * 218.37741 * 20 19 18 37 37 H 1.08998 * 110.01969 * 96.97888 * 20 19 18 38 38 H 1.09001 * 110.01881 * 119.30636 * 21 20 19 39 39 H 1.09004 * 110.02052 * 240.69887 * 21 20 19 40 40 H 1.08999 * 110.51173 * 326.33987 * 22 18 17 41 41 H 1.08995 * 110.50584 * 203.63656 * 22 18 17 42 42 H 1.08999 * 115.54640 * 148.93836 * 25 9 7 43 43 H 1.09001 * 117.50204 * 359.97438 * 26 25 9 44 44 H 1.09007 * 117.49755 * 145.02204 * 26 25 9 45 45 H 1.09000 * 117.49494 * 214.97994 * 27 25 9 46 46 H 1.08993 * 117.49442 * 359.97438 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0493 -1.2260 0.2894 9 7 1.3737 -2.3618 -0.3657 10 6 0.5768 -2.3787 -1.4525 11 8 0.4218 -1.3692 -2.1068 12 6 -0.1218 -3.6520 -1.8548 13 6 -0.9566 -3.4004 -3.1120 14 7 -1.6362 -4.6379 -3.5028 15 6 -2.8534 -4.9975 -3.0727 16 8 -3.5248 -4.3320 -2.3088 17 7 -3.2494 -6.1826 -3.5835 18 6 -2.1585 -6.6358 -4.4405 19 6 -2.6178 -6.8550 -5.8894 20 6 -3.1886 -8.2908 -5.8896 21 6 -2.5509 -9.0196 -4.6926 22 6 -1.6132 -8.0033 -4.0034 23 6 -1.1138 -5.5598 -4.3427 24 8 -0.0357 -5.5261 -4.8963 25 6 1.5613 -3.5812 0.4242 26 6 2.4160 -3.4790 1.6890 27 6 2.9618 -4.1966 0.4519 28 1 -0.4850 0.8367 0.0738 29 1 -0.7736 -3.9802 -1.0451 30 1 0.6197 -4.4240 -2.0600 31 1 -0.3045 -3.0724 -3.9215 32 1 -1.6982 -2.6281 -2.9073 33 1 -4.0881 -6.6398 -3.4152 34 1 -1.7726 -6.7800 -6.5734 35 1 -3.3922 -6.1362 -6.1574 36 1 -2.9249 -8.7970 -6.8182 37 1 -4.2721 -8.2617 -5.7746 38 1 -3.3254 -9.3438 -3.9974 39 1 -1.9782 -9.8791 -5.0410 40 1 -1.6676 -8.1075 -2.9198 41 1 -0.5880 -8.1339 -4.3496 42 1 0.7113 -4.2632 0.4449 43 1 2.8392 -2.5047 1.9332 44 1 2.1286 -4.0943 2.5417 45 1 3.0332 -5.2835 0.4912 46 1 3.7434 -3.6944 -0.1180 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068231054.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:09 Heat of formation + Delta-G solvation = -41.690095 kcal Electronic energy + Delta-G solvation = -30020.872844 eV Core-core repulsion = 25912.611292 eV Total energy + Delta-G solvation = -4108.261552 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.67772 -38.80300 -38.59973 -38.01648 -36.19650 -35.66873 -34.12742 -32.78532 -31.12565 -30.24232 -29.35672 -28.64329 -25.76777 -23.92203 -23.49209 -21.70453 -21.23777 -20.98664 -20.93129 -20.42865 -19.06445 -17.98941 -16.89489 -16.58389 -16.21877 -16.18046 -15.99638 -15.36262 -15.16448 -14.86241 -14.58529 -14.47393 -14.20346 -14.04601 -13.85904 -13.59184 -12.89443 -12.78667 -12.51235 -12.28211 -12.05979 -12.03520 -11.73049 -11.64262 -11.51582 -11.10525 -10.92330 -10.90091 -10.85826 -10.78138 -10.75135 -10.45045 -10.16684 -10.09658 -9.94416 -9.75241 -9.65781 -9.52301 -8.67246 -8.02653 -7.00723 -6.07236 -3.83982 1.56021 2.24827 3.02251 3.04766 3.33028 3.40488 3.43561 3.74513 4.05753 4.09917 4.12401 4.30165 4.60963 4.78027 4.79061 4.85352 4.92559 4.97365 5.12909 5.14433 5.28236 5.32515 5.46376 5.47328 5.49729 5.53527 5.60892 5.63524 5.69818 5.73298 5.80328 5.80900 5.85914 5.94113 6.16485 6.24021 6.35690 6.44565 6.49400 6.69569 6.76967 6.95071 7.11970 7.38221 7.64832 8.14307 8.30010 9.08457 9.16560 9.68211 10.29629 11.01752 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018476 B = 0.003138 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.112119 B = 8919.401444 C = 9517.809049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.074 3.926 3 Si 0.914 3.086 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.278 1.278 7 C -0.351 4.351 8 H 0.077 0.923 9 N -0.426 5.426 10 C 0.491 3.509 11 O -0.534 6.534 12 C -0.147 4.147 13 C 0.137 3.863 14 N -0.575 5.575 15 C 0.699 3.301 16 O -0.531 6.531 17 N -0.717 5.717 18 C 0.111 3.889 19 C -0.118 4.118 20 C -0.122 4.122 21 C -0.123 4.123 22 C -0.118 4.118 23 C 0.534 3.466 24 O -0.460 6.460 25 C 0.074 3.926 26 C -0.173 4.173 27 C -0.207 4.207 28 H 0.265 0.735 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.437 0.563 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.100 0.900 43 H 0.107 0.893 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.114 -19.738 -8.449 22.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.137 4.137 3 Si 0.741 3.259 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.204 1.204 7 C -0.477 4.477 8 H 0.095 0.905 9 N -0.146 5.146 10 C 0.278 3.722 11 O -0.413 6.413 12 C -0.188 4.188 13 C 0.017 3.983 14 N -0.321 5.321 15 C 0.400 3.600 16 O -0.403 6.403 17 N -0.382 5.382 18 C 0.019 3.981 19 C -0.156 4.156 20 C -0.160 4.160 21 C -0.160 4.160 22 C -0.156 4.156 23 C 0.320 3.680 24 O -0.329 6.329 25 C -0.032 4.032 26 C -0.210 4.210 27 C -0.246 4.246 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.118 0.882 32 H 0.123 0.877 33 H 0.282 0.718 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.111 0.889 42 H 0.118 0.882 43 H 0.126 0.874 44 H 0.102 0.898 45 H 0.101 0.899 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.093 -18.563 -8.724 21.396 hybrid contribution -0.044 0.480 0.359 0.601 sum -6.137 -18.082 -8.365 20.847 Atomic orbital electron populations 1.69820 1.06503 1.27567 1.42586 1.25254 0.94839 0.99370 0.94238 0.86258 0.79262 0.81931 0.78441 1.19936 1.21189 1.20422 1.18796 0.94364 0.83744 1.50827 0.90541 1.42714 1.43982 1.06936 1.21004 1.19430 0.83013 0.88168 0.81623 1.90536 1.62801 1.34740 1.53176 1.21888 0.99480 0.99740 0.97739 1.21517 0.96837 0.81890 0.98038 1.46784 1.17816 1.23328 1.44125 1.16115 0.81344 0.81944 0.80603 1.91054 1.56876 1.55936 1.36462 1.45299 1.20637 1.22055 1.50171 1.21372 0.87204 0.95447 0.94056 1.22487 1.02290 0.98178 0.92684 1.22206 1.00382 0.94392 0.99028 1.22207 0.98655 0.98138 0.97014 1.22487 1.00757 0.90570 1.01823 1.20388 0.86868 0.82953 0.77802 1.90804 1.20153 1.76532 1.45446 1.21695 0.92515 0.91665 0.97313 1.23069 1.04453 1.02460 0.91050 1.23320 0.99777 0.98408 1.03124 0.92482 0.90136 0.90418 0.88174 0.87689 0.71847 0.88979 0.89972 0.90844 0.91285 0.91264 0.90823 0.89876 0.88944 0.88194 0.87441 0.89837 0.89873 0.89059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -25.02 11.75 55.50 0.65 -24.37 16 2 C 0.07 2.10 4.39 -17.47 -0.08 2.03 16 3 Si 0.91 22.24 29.59 -169.99 -5.03 17.21 16 4 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.35 -9.69 7.91 -14.93 -0.12 -9.81 16 8 H 0.08 2.04 7.27 -52.49 -0.38 1.66 16 9 N -0.43 -10.85 2.83 -107.73 -0.31 -11.15 16 10 C 0.49 12.61 6.96 -10.99 -0.08 12.53 16 11 O -0.53 -15.69 13.76 5.54 0.08 -15.61 16 12 C -0.15 -2.95 4.64 -27.88 -0.13 -3.08 16 13 C 0.14 2.58 5.01 -4.04 -0.02 2.56 16 14 N -0.57 -8.90 2.62 -120.92 -0.32 -9.22 16 15 C 0.70 10.42 8.64 -87.42 -0.76 9.66 16 16 O -0.53 -10.05 17.49 5.33 0.09 -9.96 16 17 N -0.72 -7.10 6.03 -53.62 -0.32 -7.42 16 18 C 0.11 1.05 1.04 -132.88 -0.14 0.91 16 19 C -0.12 -0.86 6.03 -25.65 -0.15 -1.01 16 20 C -0.12 -0.62 6.82 -25.44 -0.17 -0.79 16 21 C -0.12 -0.62 6.82 -25.44 -0.17 -0.80 16 22 C -0.12 -0.87 6.03 -25.65 -0.15 -1.03 16 23 C 0.53 7.29 7.02 -10.99 -0.08 7.21 16 24 O -0.46 -7.35 17.80 5.59 0.10 -7.25 16 25 C 0.07 1.53 5.87 -67.93 -0.40 1.13 16 26 C -0.17 -3.18 9.80 -26.69 -0.26 -3.45 16 27 C -0.21 -3.62 10.36 -26.69 -0.28 -3.90 16 28 H 0.27 7.67 8.32 -40.82 -0.34 7.33 16 29 H 0.08 1.60 7.57 -51.93 -0.39 1.20 16 30 H 0.08 1.43 8.11 -51.93 -0.42 1.01 16 31 H 0.10 1.91 7.98 -51.93 -0.41 1.49 16 32 H 0.10 2.18 7.82 -51.93 -0.41 1.77 16 33 H 0.44 3.17 8.96 -40.82 -0.37 2.80 16 34 H 0.09 0.71 8.07 -51.93 -0.42 0.29 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.73 8.07 -51.93 -0.42 0.31 16 42 H 0.10 1.87 6.96 -51.93 -0.36 1.51 16 43 H 0.11 2.19 6.73 -51.93 -0.35 1.84 16 44 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 LS Contribution 379.66 15.07 5.72 5.72 Total: -1.00 -35.54 379.66 -9.19 -44.73 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -6.87 Total: 5.16 kcal Atomic # 6 Polarization: 15.15 SS G_CDS: -2.98 Total: 12.16 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: -0.29 Total: -52.16 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: 0.27 Total: -32.82 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.03 Total: 17.21 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.54 -9.19 -44.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068231054.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.040 kcal (2) G-P(sol) polarization free energy of solvation -35.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds