Wall clock time and date at job start Tue Mar 31 2020 18:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86800 * 119.99681 * 2 1 4 4 H 1.48502 * 109.46963 * 239.99845 * 3 2 1 5 5 H 1.48497 * 109.47205 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47132 * 119.99986 * 3 2 1 7 7 C 1.38944 * 119.99912 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00000 * 197.98652 * 7 2 1 9 9 N 1.37102 * 120.00400 * 17.99414 * 7 2 1 10 10 C 1.34776 * 119.99776 * 44.48242 * 9 7 2 11 11 O 1.21296 * 120.00397 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99895 * 180.02562 * 10 9 7 13 13 C 1.53000 * 109.47232 * 180.02562 * 12 10 9 14 14 N 1.46500 * 109.47423 * 180.02562 * 13 12 10 15 15 C 1.34006 * 124.22333 * 90.01641 * 14 13 12 16 16 O 1.21537 * 123.82100 * 359.95239 * 15 14 13 17 17 N 1.34985 * 112.36686 * 179.97438 * 15 14 13 18 18 C 1.45945 * 105.99858 * 0.02562 * 17 15 14 19 19 C 1.53565 * 112.01122 * 238.41793 * 18 17 15 20 20 C 1.54510 * 104.07858 * 275.01320 * 19 18 17 21 21 C 1.53962 * 106.66316 * 337.67566 * 20 19 18 22 22 C 1.53570 * 112.01393 * 121.57248 * 18 17 15 23 23 C 1.35212 * 124.22095 * 269.99951 * 14 13 12 24 24 O 1.21239 * 127.46510 * 0.04031 * 23 14 13 25 25 C 1.46494 * 119.99976 * 224.48481 * 9 7 2 26 26 C 1.52998 * 117.49831 * 3.27155 * 25 9 7 27 27 C 1.53003 * 117.49901 * 294.60948 * 25 9 7 28 28 H 0.96994 * 119.99976 * 354.95967 * 1 2 3 29 29 H 1.09000 * 109.47078 * 59.99776 * 12 10 9 30 30 H 1.09002 * 109.47070 * 299.99496 * 12 10 9 31 31 H 1.09000 * 109.47371 * 59.99834 * 13 12 10 32 32 H 1.09004 * 109.47078 * 299.99822 * 13 12 10 33 33 H 0.97000 * 127.00103 * 180.02562 * 17 15 14 34 34 H 1.08997 * 110.50619 * 156.36777 * 19 18 17 35 35 H 1.09001 * 110.51103 * 33.66163 * 19 18 17 36 36 H 1.08999 * 110.01616 * 218.37741 * 20 19 18 37 37 H 1.08998 * 110.01969 * 96.97888 * 20 19 18 38 38 H 1.09001 * 110.01881 * 119.30636 * 21 20 19 39 39 H 1.09004 * 110.02052 * 240.69887 * 21 20 19 40 40 H 1.08999 * 110.51173 * 326.33987 * 22 18 17 41 41 H 1.08995 * 110.50584 * 203.63656 * 22 18 17 42 42 H 1.08999 * 115.54640 * 148.93836 * 25 9 7 43 43 H 1.09001 * 117.50204 * 359.97438 * 26 25 9 44 44 H 1.09007 * 117.49755 * 145.02204 * 26 25 9 45 45 H 1.09000 * 117.49494 * 214.97994 * 27 25 9 46 46 H 1.08993 * 117.49442 * 359.97438 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0493 -1.2260 0.2894 9 7 1.3737 -2.3618 -0.3657 10 6 0.5768 -2.3787 -1.4525 11 8 0.4218 -1.3692 -2.1068 12 6 -0.1218 -3.6520 -1.8548 13 6 -0.9566 -3.4004 -3.1120 14 7 -1.6362 -4.6379 -3.5028 15 6 -2.8534 -4.9975 -3.0727 16 8 -3.5248 -4.3320 -2.3088 17 7 -3.2494 -6.1826 -3.5835 18 6 -2.1585 -6.6358 -4.4405 19 6 -2.6178 -6.8550 -5.8894 20 6 -3.1886 -8.2908 -5.8896 21 6 -2.5509 -9.0196 -4.6926 22 6 -1.6132 -8.0033 -4.0034 23 6 -1.1138 -5.5598 -4.3427 24 8 -0.0357 -5.5261 -4.8963 25 6 1.5613 -3.5812 0.4242 26 6 2.4160 -3.4790 1.6890 27 6 2.9618 -4.1966 0.4519 28 1 -0.4850 0.8367 0.0738 29 1 -0.7736 -3.9802 -1.0451 30 1 0.6197 -4.4240 -2.0600 31 1 -0.3045 -3.0724 -3.9215 32 1 -1.6982 -2.6281 -2.9073 33 1 -4.0881 -6.6398 -3.4152 34 1 -1.7726 -6.7800 -6.5734 35 1 -3.3922 -6.1362 -6.1574 36 1 -2.9249 -8.7970 -6.8182 37 1 -4.2721 -8.2617 -5.7746 38 1 -3.3254 -9.3438 -3.9974 39 1 -1.9782 -9.8791 -5.0410 40 1 -1.6676 -8.1075 -2.9198 41 1 -0.5880 -8.1339 -4.3496 42 1 0.7113 -4.2632 0.4449 43 1 2.8392 -2.5047 1.9332 44 1 2.1286 -4.0943 2.5417 45 1 3.0332 -5.2835 0.4912 46 1 3.7434 -3.6944 -0.1180 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068231054.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:08 Heat of formation + Delta-G solvation = -66.200102 kcal Electronic energy + Delta-G solvation = -30021.935678 eV Core-core repulsion = 25912.611292 eV Total energy + Delta-G solvation = -4109.324386 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.76587 -40.51032 -39.87903 -38.95648 -37.88966 -36.96735 -35.30168 -34.68926 -33.00030 -31.86220 -29.89097 -29.41116 -27.59120 -25.52958 -24.65799 -23.18470 -22.83942 -22.11011 -21.52800 -21.42224 -20.89469 -19.13446 -18.50056 -17.90410 -17.63189 -17.45515 -17.04324 -16.87610 -16.37280 -16.24524 -16.05049 -15.89538 -15.55991 -15.33654 -15.24479 -14.67171 -14.47927 -14.21447 -13.98502 -13.60768 -13.41216 -12.93129 -12.85398 -12.81313 -12.76379 -12.66989 -12.32548 -12.21408 -12.17895 -12.12165 -12.09887 -11.95160 -11.68140 -11.30598 -11.27989 -11.23937 -11.02889 -10.72825 -10.46742 -10.03349 -9.00714 -8.21071 -6.01051 0.45082 1.05341 1.35483 1.44643 1.48230 1.82498 2.10131 2.19275 2.37334 2.81779 3.05285 3.10857 3.32363 3.42188 3.42483 3.77517 3.84708 3.92559 4.06479 4.09968 4.24006 4.26260 4.30046 4.35822 4.39985 4.41072 4.47549 4.53844 4.68997 4.73697 4.81342 4.86916 4.87207 5.02257 5.03566 5.04867 5.25750 5.25963 5.29812 5.44509 5.47661 5.48307 5.76453 5.98126 6.18216 6.28444 7.00541 7.03325 7.14388 7.65256 8.29225 8.87473 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018476 B = 0.003138 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.112119 B = 8919.401444 C = 9517.809049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.021 3.979 3 Si 0.973 3.027 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.255 1.255 7 C -0.359 4.359 8 H 0.080 0.920 9 N -0.441 5.441 10 C 0.473 3.527 11 O -0.585 6.585 12 C -0.125 4.125 13 C 0.150 3.850 14 N -0.580 5.580 15 C 0.697 3.303 16 O -0.578 6.578 17 N -0.686 5.686 18 C 0.117 3.883 19 C -0.117 4.117 20 C -0.116 4.116 21 C -0.116 4.116 22 C -0.116 4.116 23 C 0.529 3.471 24 O -0.486 6.486 25 C 0.039 3.961 26 C -0.167 4.167 27 C -0.177 4.177 28 H 0.260 0.740 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.453 0.547 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.119 0.881 43 H 0.083 0.917 44 H 0.117 0.883 45 H 0.125 0.875 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.971 -23.257 -8.552 25.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.186 4.186 3 Si 0.798 3.202 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.179 1.179 7 C -0.486 4.486 8 H 0.098 0.902 9 N -0.161 5.161 10 C 0.261 3.739 11 O -0.466 6.466 12 C -0.166 4.166 13 C 0.028 3.972 14 N -0.325 5.325 15 C 0.398 3.602 16 O -0.453 6.453 17 N -0.352 5.352 18 C 0.026 3.974 19 C -0.155 4.155 20 C -0.154 4.154 21 C -0.154 4.154 22 C -0.154 4.154 23 C 0.318 3.682 24 O -0.356 6.356 25 C -0.066 4.066 26 C -0.205 4.205 27 C -0.216 4.216 28 H 0.069 0.931 29 H 0.102 0.898 30 H 0.117 0.883 31 H 0.109 0.891 32 H 0.095 0.905 33 H 0.301 0.699 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.136 0.864 43 H 0.101 0.899 44 H 0.136 0.864 45 H 0.143 0.857 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.938 -22.180 -8.817 24.595 hybrid contribution -0.009 1.486 0.363 1.530 sum -5.946 -20.694 -8.454 23.131 Atomic orbital electron populations 1.69948 1.08064 1.27772 1.44883 1.26112 0.95534 1.02756 0.94150 0.85334 0.78079 0.77950 0.78860 1.20626 1.21355 1.17918 1.19086 0.94720 0.85010 1.49787 0.90230 1.42958 1.43545 1.08045 1.21541 1.20305 0.82945 0.89308 0.81297 1.90489 1.64512 1.36880 1.54764 1.21655 0.99496 0.97301 0.98129 1.21059 0.95902 0.83010 0.97274 1.46739 1.18288 1.22727 1.44786 1.16219 0.80783 0.82854 0.80344 1.91027 1.57934 1.57621 1.38741 1.45143 1.21217 1.20016 1.48791 1.21555 0.85457 0.94721 0.95639 1.22553 1.02342 1.00159 0.90472 1.22216 1.01079 0.92361 0.99705 1.22217 0.98547 0.97619 0.96990 1.22551 1.01217 0.89359 1.02315 1.21128 0.87304 0.83224 0.76576 1.90787 1.21550 1.77134 1.46178 1.22008 0.95037 0.90659 0.98911 1.23126 1.03266 1.02176 0.91899 1.23333 0.96528 1.00460 1.01252 0.93110 0.89815 0.88316 0.89091 0.90517 0.69857 0.89296 0.89844 0.89598 0.89886 0.89850 0.89563 0.89632 0.89224 0.86360 0.89875 0.86445 0.85735 0.90558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -54.68 11.75 21.66 0.25 -54.42 16 2 C 0.02 1.22 4.39 84.92 0.37 1.59 16 3 Si 0.97 46.85 29.59 68.60 2.03 48.88 16 4 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.25 -11.17 7.11 99.48 0.71 -10.46 16 7 C -0.36 -20.27 7.91 84.04 0.66 -19.61 16 8 H 0.08 4.32 7.27 -2.91 -0.02 4.30 16 9 N -0.44 -22.89 2.83 -613.14 -1.74 -24.62 16 10 C 0.47 25.18 6.96 87.66 0.61 25.79 16 11 O -0.58 -36.17 13.76 -3.08 -0.04 -36.22 16 12 C -0.12 -5.11 4.64 29.85 0.14 -4.97 16 13 C 0.15 5.90 5.01 86.38 0.43 6.33 16 14 N -0.58 -18.21 2.62 -773.37 -2.03 -20.23 16 15 C 0.70 20.72 8.64 179.23 1.55 22.26 16 16 O -0.58 -22.39 17.49 -3.83 -0.07 -22.46 16 17 N -0.69 -12.35 6.03 -441.71 -2.66 -15.01 16 18 C 0.12 1.98 1.04 3.22 0.00 1.98 16 19 C -0.12 -1.41 6.03 31.30 0.19 -1.22 16 20 C -0.12 -0.71 6.82 31.43 0.21 -0.50 16 21 C -0.12 -0.70 6.82 31.43 0.21 -0.49 16 22 C -0.12 -1.38 6.03 31.30 0.19 -1.19 16 23 C 0.53 14.16 7.02 87.46 0.61 14.78 16 24 O -0.49 -15.43 17.80 -2.90 -0.05 -15.48 16 25 C 0.04 1.55 5.87 44.99 0.26 1.82 16 26 C -0.17 -5.84 9.80 30.62 0.30 -5.54 16 27 C -0.18 -5.73 10.36 30.62 0.32 -5.41 16 28 H 0.26 15.76 8.32 -92.71 -0.77 14.99 16 29 H 0.08 3.37 7.57 -2.39 -0.02 3.35 16 30 H 0.10 3.58 8.11 -2.39 -0.02 3.57 16 31 H 0.09 3.70 7.98 -2.39 -0.02 3.68 16 32 H 0.08 3.44 7.82 -2.39 -0.02 3.43 16 33 H 0.45 5.35 8.96 -92.71 -0.83 4.52 16 34 H 0.09 1.19 8.07 -2.39 -0.02 1.17 16 35 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.08 0.33 8.14 -2.39 -0.02 0.32 16 38 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.09 0.38 8.14 -2.38 -0.02 0.36 16 40 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.09 1.18 8.07 -2.39 -0.02 1.16 16 42 H 0.12 4.24 6.96 -2.39 -0.02 4.22 16 43 H 0.08 3.33 6.73 -2.39 -0.02 3.32 16 44 H 0.12 3.29 8.14 -2.38 -0.02 3.27 16 45 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 46 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -82.34 379.66 1.94 -80.40 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: 0.18 Total: 23.55 kcal Atomic # 6 Polarization: 29.55 SS G_CDS: 6.07 Total: 35.62 kcal Atomic # 7 Polarization: -108.12 SS G_CDS: -6.17 Total: -114.29 kcal Atomic # 8 Polarization: -73.99 SS G_CDS: -0.16 Total: -74.15 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -82.34 1.94 -80.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068231054.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.200 kcal (2) G-P(sol) polarization free energy of solvation -82.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds